TCONS_00020739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020739
Unique NameTCONS_00020739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020739 ID=TCONS_00020739|Name=TCONS_00020739|organism=Clytia hemisphaerica|type=transcript|length=617bp
TCAAGCAAACCAAAAAACTCAGAAATGTTACTGTTGAGCAGAGACAATTG
GTGAAGGATTTGGTTGTAGGATACAGGGAAAGTATGTCAACTGGTTTATG
TGTGCCTCCTAGTATTGCCACTGGATTAACCGacgaaaagattgaaagaa
tcATTGCCAATGTAGAAAAGATTGAttcgaaattatttttggtCAATATG
ATTGGTGTTATTGAAAACAAgacattaaataaaattttgcaTATAATTAA
TATGGTTTTTGATGACATGGAAATAGATACTAACACACCTGTGGAAAAAA
TGGCTTTGGATGATACGACTAAATACTTTTCAGACAATGACTCAATAGTC
TCACTACTATGTACTGATAGTAGTGATGACGAATGATTTTAACAGAGAAT
TTTGTACTTCTTCTTTACTTcttgatttttaacatttttaacttctcgat
tttttattagaatagtgtactttgactGAGGGGCAAGTATTTTTAAGAAC
TTGCCAAAATAGAGGTGAAATATTCCTAATCTATTCTTACATACTTACAT
ACTTGacctttataagaacatgagaaTTGCCCCTTTTGGGAGTTTGACGC
TTTTTACTGTGCATTGG
Run BLAST on NCBI

protein sequence of TCONS_00020739-protein

>TCONS_00020739-protein ID=TCONS_00020739-protein|Name=TCONS_00020739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
KQTKKLRNVTVEQRQLVKDLVVGYRESMSTGLCVPPSIATGLTDEKIERI
IANVEKIDSKLFLVNMIGVIENKTLNKILHIINMVFDDMEIDTNTPVEKM
ALDDTTKYFSDNDSIVSLLCTDSSDDE
Run BLAST on NCBI

transcript from alignment at sc0000365:44941..45557

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020739 ID=TCONS_00020739|Name=TCONS_00020739|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at sc0000365:44941..45557 (Clytia hemisphaerica)
CCAATGCACAGTAAAAAGCGTCAAACTCCCAAAAGGGGCAAttctcatgt
tcttataaaggtCAAGTATGTAAGTATGTAAGAATAGATTAGGAATATTT
CACCTCTATTTTGGCAAGTTCTTAAAAATACTTGCCCCTCagtcaaagta
cactattctaataaaaaatcgagaagttaaaaatgttaaaaatcaagAAG
TAAAGAAGAAGTACAAAATTCTCTGTTAAAATCATTCGTCATCACTACTA
TCAGTACATAGTAGTGAGACTATTGAGTCATTGTCTGAAAAGTATTTAGT
CGTATCATCCAAAGCCATTTTTTCCACAGGTGTGTTAGTATCTATTTCCA
TGTCATCAAAAACCATATTAATTATAtgcaaaattttatttaatgtcTTG
TTTTCAATAACACCAATCATATTGaccaaaaataatttcgaaTCAATCTT
TTCTACATTGGCAATgattctttcaatcttttcgtCGGTTAATCCAGTGG
CAATACTAGGAGGCACACATAAACCAGTTGACATACTTTCCCTGTATCCT
ACAACCAAATCCTTCACCAATTGTCTCTGCTCAACAGTAACATTTCTGAG
TTTTTTGGTTTGCTTGA

Coding sequence (CDS) from alignment at sc0000365:44941..45557

>TCONS_00020739 ID=TCONS_00020739|Name=TCONS_00020739|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000365:44941..45557 (Clytia hemisphaerica)
TCATTCGTCATCACTACTATCAGTACATAGTAGTGAGACTATTGAGTCAT
TGTCTGAAAAGTATTTAGTCGTATCATCCAAAGCCATTTTTTCCACAGGT
GTGTTAGTATCTATTTCCATGTCATCAAAAACCATATTAATTATAtgcaa
aattttatttaatgtcTTGTTTTCAATAACACCAATCATATTGaccaaaa
ataatttcgaaTCAATCTTTTCTACATTGGCAATgattctttcaatcttt
tcgtCGGTTAATCCAGTGGCAATACTAGGAGGCACACATAAACCAGTTGA
CATACTTTCCCTGTATCCTACAACCAAATCCTTCACCAATTGTCTCTGCT
CAACAGTAACATTTCTGAGTTTTTTGGTTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011636XLOC_011636Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020739-proteinTCONS_00020739-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020739-exon-sc0000365-1491911889:44941..45557TCONS_00020739-exon-sc0000365-1491911889:44941..45557Clytia hemisphaericaexon
TCONS_00020739-exon-sc0000365-1510915933:44941..45557TCONS_00020739-exon-sc0000365-1510915933:44941..45557Clytia hemisphaericaexon
TCONS_00020739-exon-sc0000365-1575043694:44941..45557TCONS_00020739-exon-sc0000365-1575043694:44941..45557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:44941..45557 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.703584	0.648645	1.11795	0.732626	0.439653	1.08916	0.0880973	0.521205	0.231325	0.240233	0.148128	0.423905	0.130554	0.334534	1.10922	0.677089	0	0	0	0.0906428	0.56016	0.249965	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top