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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020741 ID=TCONS_00020741|Name=TCONS_00020741|organism=Clytia hemisphaerica|type=transcript|length=1223bp
GAAAGATATCAGaaatagaaatgaaaataaaaacaaaaataaaatataaa
caacaaagatggcggagAGAAAGAAGTTGACCGAGAATCAGTCTTGTCAA
CTTAGAGCTCTTGTCCAGTTTGGTGGTGTCAAGGTCAGCCGTATAATCGA
GGACAAGAAGACATTCCCTGGCTTTGCGAACATTCCGGCACCTACTCTCT
ACCGGCACGCAAGGATTCCCCTTGATGGAACAGATCCAGCTGACAGACGT
AAGCTGAACAAAGGTAGGCCAAGTTTACTGGATGAGCGGGACCTTAGGTC
AGTTAAGCGACAGATCTCTATATTGAGGAATACAGATGGCACCTTTTCAT
CGATTCGACTGCAAGCGCACAGCACGGGTACAAAGACGAGCAACTCAACT
TTTCGGCGGTACTTAAGGAGAATGGGATACGGTCACCGCACTACCAGGAG
AAAGGGAATTTTGAAACAGAAGGATCTGGAAAAGAGGCTGAAGTTTGCCA
AGAAGGTCAAGCGTTTAGGGTTGGGAGCAGACTTTTGGAAAGAGGGTATC
AGTTTTTACCTGGATGCCACCGGCTTTGTGTACAAAAAAAACCCGCTGGA
CCAGGCACACACCCCAACCGCAAGGGAATGGAGGAAAAAGACTGAAGGCT
TGACGTTTGGCTGCACAACAAAAGGGCAAAAAGAGGGTACCACACAAAAG
AAGTTCATGGTGGCAATCTCATATGACAAAGGGGTAGTGATGTGCAAAGA
ATTTGAGTTTCGTCTGAACGGGTACAAATTTGCACGGATGGTGAGACGTG
ATTTTCCCCTTGCCTTTAACTTGAGCAACAACCCAAAGGCCAAACGAATC
CTGCAAGACGGTTGTCCAGTACAGAATTCAAGTCGAGGCAGACGAGCGAT
TGACCGTCTAGGAGGACATTTGTTTTGTATTCCCGCAAGATCCCCAGACA
TTAACCCAATAGAGAACTTTTTCCATCTTGTTGGTAAACAATTGAAGAGA
CAGGCACTAGAACAAAAGATTATTTCTGAAACACAAGAGGAATTTGTTGC
CCGGGTCCAGAAGACAATGAGGGATTTTCCCGTGGAGACCATTAACAAAA
TCATCGACAGCATGGACAAACGCATAAACCTGATCATCAAGAATGGCGGA
CAAAGAACAAAGTACTGagaagtaaatatttttttattatcaatttatAG
CTTAGAAATAAATAACACAATGA Run BLAST on NCBI protein sequence of TCONS_00020741-protein >TCONS_00020741-protein ID=TCONS_00020741-protein|Name=TCONS_00020741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MAERKKLTENQSCQLRALVQFGGVKVSRIIEDKKTFPGFANIPAPTLYRH
ARIPLDGTDPADRRKLNKGRPSLLDERDLRSVKRQISILRNTDGTFSSIR
LQAHSTGTKTSNSTFRRYLRRMGYGHRTTRRKGILKQKDLEKRLKFAKKV
KRLGLGADFWKEGISFYLDATGFVYKKNPLDQAHTPTAREWRKKTEGLTF
GCTTKGQKEGTTQKKFMVAISYDKGVVMCKEFEFRLNGYKFARMVRRDFP
LAFNLSNNPKAKRILQDGCPVQNSSRGRRAIDRLGGHLFCIPARSPDINP
IENFFHLVGKQLKRQALEQKIISETQEEFVARVQKTMRDFPVETINKIID
SMDKRINLIIKNGGQRTKY Run BLAST on NCBI transcript from alignment at sc0000365:68400..69622 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020741 ID=TCONS_00020741|Name=TCONS_00020741|organism=Clytia hemisphaerica|type=transcript|length=1223bp|location=Sequence derived from alignment at sc0000365:68400..69622 (Clytia hemisphaerica)
TCATTGTGTTATTTATTTCTAAGCTataaattgataataaaaaaatattt
acttctCAGTACTTTGTTCTTTGTCCGCCATTCTTGATGATCAGGTTTAT
GCGTTTGTCCATGCTGTCGATGATTTTGTTAATGGTCTCCACGGGAAAAT
CCCTCATTGTCTTCTGGACCCGGGCAACAAATTCCTCTTGTGTTTCAGAA
ATAATCTTTTGTTCTAGTGCCTGTCTCTTCAATTGTTTACCAACAAGATG
GAAAAAGTTCTCTATTGGGTTAATGTCTGGGGATCTTGCGGGAATACAAA
ACAAATGTCCTCCTAGACGGTCAATCGCTCGTCTGCCTCGACTTGAATTC
TGTACTGGACAACCGTCTTGCAGGATTCGTTTGGCCTTTGGGTTGTTGCT
CAAGTTAAAGGCAAGGGGAAAATCACGTCTCACCATCCGTGCAAATTTGT
ACCCGTTCAGACGAAACTCAAATTCTTTGCACATCACTACCCCTTTGTCA
TATGAGATTGCCACCATGAACTTCTTTTGTGTGGTACCCTCTTTTTGCCC
TTTTGTTGTGCAGCCAAACGTCAAGCCTTCAGTCTTTTTCCTCCATTCCC
TTGCGGTTGGGGTGTGTGCCTGGTCCAGCGGGTTTTTTTTGTACACAAAG
CCGGTGGCATCCAGGTAAAAACTGATACCCTCTTTCCAAAAGTCTGCTCC
CAACCCTAAACGCTTGACCTTCTTGGCAAACTTCAGCCTCTTTTCCAGAT
CCTTCTGTTTCAAAATTCCCTTTCTCCTGGTAGTGCGGTGACCGTATCCC
ATTCTCCTTAAGTACCGCCGAAAAGTTGAGTTGCTCGTCTTTGTACCCGT
GCTGTGCGCTTGCAGTCGAATCGATGAAAAGGTGCCATCTGTATTCCTCA
ATATAGAGATCTGTCGCTTAACTGACCTAAGGTCCCGCTCATCCAGTAAA
CTTGGCCTACCTTTGTTCAGCTTACGTCTGTCAGCTGGATCTGTTCCATC
AAGGGGAATCCTTGCGTGCCGGTAGAGAGTAGGTGCCGGAATGTTCGCAA
AGCCAGGGAATGTCTTCTTGTCCTCGATTATACGGCTGACCTTGACACCA
CCAAACTGGACAAGAGCTCTAAGTTGACAAGACTGATTCTCGGTCAACTT
CTTTCTctccgccatctttgttgtttatattttatttttgtttttatttt
catttctatttCTGATATCTTTC Coding sequence (CDS) from alignment at sc0000365:68400..69622 >TCONS_00020741 ID=TCONS_00020741|Name=TCONS_00020741|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000365:68400..69622 (Clytia hemisphaerica)
tCAGTACTTTGTTCTTTGTCCGCCATTCTTGATGATCAGGTTTATGCGTT
TGTCCATGCTGTCGATGATTTTGTTAATGGTCTCCACGGGAAAATCCCTC
ATTGTCTTCTGGACCCGGGCAACAAATTCCTCTTGTGTTTCAGAAATAAT
CTTTTGTTCTAGTGCCTGTCTCTTCAATTGTTTACCAACAAGATGGAAAA
AGTTCTCTATTGGGTTAATGTCTGGGGATCTTGCGGGAATACAAAACAAA
TGTCCTCCTAGACGGTCAATCGCTCGTCTGCCTCGACTTGAATTCTGTAC
TGGACAACCGTCTTGCAGGATTCGTTTGGCCTTTGGGTTGTTGCTCAAGT
TAAAGGCAAGGGGAAAATCACGTCTCACCATCCGTGCAAATTTGTACCCG
TTCAGACGAAACTCAAATTCTTTGCACATCACTACCCCTTTGTCATATGA
GATTGCCACCATGAACTTCTTTTGTGTGGTACCCTCTTTTTGCCCTTTTG
TTGTGCAGCCAAACGTCAAGCCTTCAGTCTTTTTCCTCCATTCCCTTGCG
GTTGGGGTGTGTGCCTGGTCCAGCGGGTTTTTTTTGTACACAAAGCCGGT
GGCATCCAGGTAAAAACTGATACCCTCTTTCCAAAAGTCTGCTCCCAACC
CTAAACGCTTGACCTTCTTGGCAAACTTCAGCCTCTTTTCCAGATCCTTC
TGTTTCAAAATTCCCTTTCTCCTGGTAGTGCGGTGACCGTATCCCATTCT
CCTTAAGTACCGCCGAAAAGTTGAGTTGCTCGTCTTTGTACCCGTGCTGT
GCGCTTGCAGTCGAATCGATGAAAAGGTGCCATCTGTATTCCTCAATATA
GAGATCTGTCGCTTAACTGACCTAAGGTCCCGCTCATCCAGTAAACTTGG
CCTACCTTTGTTCAGCTTACGTCTGTCAGCTGGATCTGTTCCATCAAGGG
GAATCCTTGCGTGCCGGTAGAGAGTAGGTGCCGGAATGTTCGCAAAGCCA
GGGAATGTCTTCTTGTCCTCGATTATACGGCTGACCTTGACACCACCAAA
CTGGACAAGAGCTCTAAGTTGACAAGACTGATTCTCGGTCAACTTCTTTC
Tctccgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020741-exon-sc0000365-1491911889:68400..69622 | TCONS_00020741-exon-sc0000365-1491911889:68400..69622 | Clytia hemisphaerica | exon |
| TCONS_00020741-exon-sc0000365-1510915933:68400..69622 | TCONS_00020741-exon-sc0000365-1510915933:68400..69622 | Clytia hemisphaerica | exon |
| TCONS_00020741-exon-sc0000365-1575043694:68400..69622 | TCONS_00020741-exon-sc0000365-1575043694:68400..69622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365 | supercontig | sc0000365:68400..69622 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002492 | Transposase_Tc1-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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