TCONS_00020742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020742
Unique NameTCONS_00020742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020742 ID=TCONS_00020742|Name=TCONS_00020742|organism=Clytia hemisphaerica|type=transcript|length=645bp
GATCAGCAGGATTATTCTCAGATTCAACATAATTCCATTGAGAAGATTTC
GTTGTTTTCGTAATAAGACACACCCTGTTAGCaacaaattttctaaattt
cttcGTAGTGTTACTAATATAGCCTAAAGCACACGTATTGTCACACCAGA
AAAGTTCATAAGCTATTTCATAATCAAATTCCTTTGAGATAAACTTAGCT
ATTTGAGAAGAAAGAGTAGCAGCAATCAACTCCAAACGAGGCATAGTGTG
ATTACTTTTAGCTGGGACAACGCGAGATTTACCCATTACCAAAGAACAAT
TAACATAATTATCAGACGTTACGAATCTTAAGTAATGACAACCACTATAA
CCATAATCACAAGCGTCAGAAAAGTGGTGTAAACTGATTTCAACAATTTN
AAgtaaattttgttaaatgaaAACCTCCATAATCACACATACTAGAAACG
TCTGAAATAAGAAACTTTGCAGACTCAACACTCTCAGTAGATTTCAGCAA
ATCATCAacgtaaaaaatttttcttagtgTGTTGGCAGCCTGAACTCCAA
ACTCATTTTCACCTGCAGAAGCTGTTTGTTTCAGAGCGAAATTGCTACAA
CTAGGCGAAGAGGTACTACCTTGGAGATGAGTGTTCATTTCATAG
Run BLAST on NCBI

transcript from alignment at sc0000365:83786..84430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020742 ID=TCONS_00020742|Name=TCONS_00020742|organism=Clytia hemisphaerica|type=transcript|length=645bp|location=Sequence derived from alignment at sc0000365:83786..84430 (Clytia hemisphaerica)
CTATGAAATGAACACTCATCTCCAAGGTAGTACCTCTTCGCCTAGTTGTA
GCAATTTCGCTCTGAAACAAACAGCTTCTGCAGGTGAAAATGAGTTTGGA
GTTCAGGCTGCCAACAcactaagaaaaattttttacgtTGATGATTTGCT
GAAATCTACTGAGAGTGTTGAGTCTGCAAAGTTTCTTATTTCAGACGTTT
CTAGTATGTGTGATTATGGAGGTTttcatttaacaaaatttacTTNAAAT
TGTTGAAATCAGTTTACACCACTTTTCTGACGCTTGTGATTATGGTTATA
GTGGTTGTCATTACTTAAGATTCGTAACGTCTGATAATTATGTTAATTGT
TCTTTGGTAATGGGTAAATCTCGCGTTGTCCCAGCTAAAAGTAATCACAC
TATGCCTCGTTTGGAGTTGATTGCTGCTACTCTTTCTTCTCAAATAGCTA
AGTTTATCTCAAAGGAATTTGATTATGAAATAGCTTATGAACTTTTCTGG
TGTGACAATACGTGTGCTTTAGGCTATATTAGTAACACTACgaagaaatt
tagaaaatttgttGCTAACAGGGTGTGTCTTATTACGAAAACAACGAAAT
CTTCTCAATGGAATTATGTTGAATCTGAGAATAATCCTGCTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011639XLOC_011639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020742-exon-sc0000365-1491911889:83786..84430TCONS_00020742-exon-sc0000365-1491911889:83786..84430Clytia hemisphaericaexon
TCONS_00020742-exon-sc0000365-1510915933:83786..84430TCONS_00020742-exon-sc0000365-1510915933:83786..84430Clytia hemisphaericaexon
TCONS_00020742-exon-sc0000365-1575043694:83786..84430TCONS_00020742-exon-sc0000365-1575043694:83786..84430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:83786..84430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.95482	2.72442	1.01938	0.290749	0	0.0867127	0.313846	0.0979395	0.601447	0.339739	0.0824397	0.162578	0.0757595	0	0.0462051	0.121658	0	0	0.432496	0.302663	0.287229	0.575617	0.932983	0.642473	0.0873644	0.233912	0	0.119077	0.361262	0.552103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top