TCONS_00020744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020744
Unique NameTCONS_00020744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020744 ID=TCONS_00020744|Name=TCONS_00020744|organism=Clytia hemisphaerica|type=transcript|length=597bp
AGCGACCTTGGCTTGACTATCATCTTTTAGACACCCAATATCCAGAGTTT
GATGAAGACCTAGAGCAAGAACCGCCAACTCAAGTCATCACAAGCGTCCC
CGAAACGCCTACCAAGCAGAGCACGTCCTGCCAGCCAATAAAAATCACCA
TGACCATGCCAACAGTCAGAAATCCATCGATTCTGTTATCACGTCCTATC
AGCCGCCAAAATCACCTAAATCTGACGATGAAAACAGTGAGGAATCCATC
GATTCGGTTATCACGTCCTATCAGCCACCAAAATCACCTAACTCTGACGA
TGGCAACAACAAGGCCATCGCTGAGTCTGTCATCACGTCCGACCAGCCAC
CAAAATCACCTAACTCTGACGATGGCAACAACAAGGCCATCGCTGAGTCT
GTCATCACGTCCGACCAGCCACCAAAATCACCTAACTCTGACGATGGCAA
GAACAAGGGCGTCGCTGGATCTGTCATCACGTCAGACCAGCCACCAAAAT
CACCTAACTCTGACGATGCCAATTCTGAATCATGCGTTGAACCAGACGAC
AAAGATACCAATAACGGGTCACAGTTTCAAATGCACGTCCTGTTGCA
Run BLAST on NCBI

protein sequence of TCONS_00020744-protein

>TCONS_00020744-protein ID=TCONS_00020744-protein|Name=TCONS_00020744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
RPWLDYHLLDTQYPEFDEDLEQEPPTQVITSVPETPTKQSTSCQPIKITM
TMPTVRNPSILLSRPISRQNHLNLTMKTVRNPSIRLSRPISHQNHLTLTM
ATTRPSLSLSSRPTSHQNHLTLTMATTRPSLSLSSRPTSHQNHLTLTMAR
TRASLDLSSRQTSHQNHLTLTMPILNHALNQTTKIPITGHSFKCTSCC
Run BLAST on NCBI

transcript from alignment at sc0000365:98284..98880

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020744 ID=TCONS_00020744|Name=TCONS_00020744|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at sc0000365:98284..98880 (Clytia hemisphaerica)
TGCAACAGGACGTGCATTTGAAACTGTGACCCGTTATTGGTATCTTTGTC
GTCTGGTTCAACGCATGATTCAGAATTGGCATCGTCAGAGTTAGGTGATT
TTGGTGGCTGGTCTGACGTGATGACAGATCCAGCGACGCCCTTGTTCTTG
CCATCGTCAGAGTTAGGTGATTTTGGTGGCTGGTCGGACGTGATGACAGA
CTCAGCGATGGCCTTGTTGTTGCCATCGTCAGAGTTAGGTGATTTTGGTG
GCTGGTCGGACGTGATGACAGACTCAGCGATGGCCTTGTTGTTGCCATCG
TCAGAGTTAGGTGATTTTGGTGGCTGATAGGACGTGATAACCGAATCGAT
GGATTCCTCACTGTTTTCATCGTCAGATTTAGGTGATTTTGGCGGCTGAT
AGGACGTGATAACAGAATCGATGGATTTCTGACTGTTGGCATGGTCATGG
TGATTTTTATTGGCTGGCAGGACGTGCTCTGCTTGGTAGGCGTTTCGGGG
ACGCTTGTGATGACTTGAGTTGGCGGTTCTTGCTCTAGGTCTTCATCAAA
CTCTGGATATTGGGTGTCTAAAAGATGATAGTCAAGCCAAGGTCGCT

Coding sequence (CDS) from alignment at sc0000365:98284..98880

>TCONS_00020744 ID=TCONS_00020744|Name=TCONS_00020744|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000365:98284..98880 (Clytia hemisphaerica)
GCAACAGGACGTGCATTTGAAACTGTGACCCGTTATTGGTATCTTTGTCG
TCTGGTTCAACGCATGATTCAGAATTGGCATCGTCAGAGTTAGGTGATTT
TGGTGGCTGGTCTGACGTGATGACAGATCCAGCGACGCCCTTGTTCTTGC
CATCGTCAGAGTTAGGTGATTTTGGTGGCTGGTCGGACGTGATGACAGAC
TCAGCGATGGCCTTGTTGTTGCCATCGTCAGAGTTAGGTGATTTTGGTGG
CTGGTCGGACGTGATGACAGACTCAGCGATGGCCTTGTTGTTGCCATCGT
CAGAGTTAGGTGATTTTGGTGGCTGATAGGACGTGATAACCGAATCGATG
GATTCCTCACTGTTTTCATCGTCAGATTTAGGTGATTTTGGCGGCTGATA
GGACGTGATAACAGAATCGATGGATTTCTGACTGTTGGCATGGTCATGGT
GATTTTTATTGGCTGGCAGGACGTGCTCTGCTTGGTAGGCGTTTCGGGGA
CGCTTGTGATGACTTGAGTTGGCGGTTCTTGCTCTAGGTCTTCATCAAAC
TCTGGATATTGGGTGTCTAAAAGATGATAGTCAAGCCAAGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011641XLOC_011641Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020744-proteinTCONS_00020744-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020744-exon-sc0000365-1491911889:98284..98880TCONS_00020744-exon-sc0000365-1491911889:98284..98880Clytia hemisphaericaexon
TCONS_00020744-exon-sc0000365-1510915933:98284..98880TCONS_00020744-exon-sc0000365-1510915933:98284..98880Clytia hemisphaericaexon
TCONS_00020744-exon-sc0000365-1575043694:98284..98880TCONS_00020744-exon-sc0000365-1575043694:98284..98880Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:98284..98880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182875	0.534996	0	0	0	0	0.352672	0.77039	0.154105	0.381768	1.66749	0.365381	0.243249	1.67052	0.363449	1.67158	0.205925	0.812297	0.874801	1.39939	1.41451	0.388096	0.819156	0.667206	0.392689	0	1.86156	1.53555	1.62382	1.24081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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