TCONS_00020747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020747
Unique NameTCONS_00020747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020747 ID=TCONS_00020747|Name=TCONS_00020747|organism=Clytia hemisphaerica|type=transcript|length=456bp
tctgccatcttttttGGATCACTGATAAGGTTTTCTCCATCAATTAGCGg
tccaattttgtttttgacttttgcaaATTGTTTTGCATATGAGTAGAAGT
ATTTTGGGTTTTTCTTGATTGCTTTTATTGCTCTATCTTCTTCAAATtga
gatgaatgtttataagcTTTTTGAAGTCTTACTTCAATTGAAATTAGCTC
TTTTGTGAGTTTATTACGTCTTGAAGGCGAAGTGGTATGAATTAAGAGCT
TGTTTATCCTGCGTCTTCTTCGCGTCAAGTTAATTCTAAGTCTTTGAGAA
GGgtcaaatcttttttgctttacTCTTGTTGGTGGAACATGATTTTGTGC
AATTTGAAAGGTGATTTTGTAGAAGCTTTCTAACATGTCATTTGGAGTTT
TCTTTCTGAACTCCATATCCCAGTCATAATTTTCTAAACTGGCAACGAGA
TCTGAC
Run BLAST on NCBI

protein sequence of TCONS_00020747-protein

>TCONS_00020747-protein ID=TCONS_00020747-protein|Name=TCONS_00020747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
SDLVASLENYDWDMEFRKKTPNDMLESFYKITFQIAQNHVPPTRVKQKRF
DPSQRLRINLTRRRRRINKLLIHTTSPSRRNKLTKELISIEVRLQKAYKH
SSQFEEDRAIKAIKKNPKYFYSYAKQFAKVKNKIGPLIDGENLISDPKKM
A
Run BLAST on NCBI

transcript from alignment at sc0000365:154687..155142

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020747 ID=TCONS_00020747|Name=TCONS_00020747|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0000365:154687..155142 (Clytia hemisphaerica)
GTCAGATCTCGTTGCCAGTTTAGAAAATTATGACTGGGATATGGAGTTCA
GAAAGAAAACTCCAAATGACATGTTAGAAAGCTTCTACAAAATCACCTTT
CAAATTGCACAAAATCATGTTCCACCAACAAGAgtaaagcaaaaaagatt
tgacCCTTCTCAAAGACTTAGAATTAACTTGACGCGAAGAAGACGCAGGA
TAAACAAGCTCTTAATTCATACCACTTCGCCTTCAAGACGTAATAAACTC
ACAAAAGAGCTAATTTCAATTGAAGTAAGACTTCAAAAAgcttataaaca
ttcatctcaATTTGAAGAAGATAGAGCAATAAAAGCAATCAAGAAAAACC
CAAAATACTTCTACTCATATGCAAAACAATttgcaaaagtcaaaaacaaa
attggacCGCTAATTGATGGAGAAAACCTTATCAGTGATCCaaaaaagat
ggcaga

Coding sequence (CDS) from alignment at sc0000365:154687..155142

>TCONS_00020747 ID=TCONS_00020747|Name=TCONS_00020747|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000365:154687..155142 (Clytia hemisphaerica)
TCAGATCTCGTTGCCAGTTTAGAAAATTATGACTGGGATATGGAGTTCAG
AAAGAAAACTCCAAATGACATGTTAGAAAGCTTCTACAAAATCACCTTTC
AAATTGCACAAAATCATGTTCCACCAACAAGAgtaaagcaaaaaagattt
gacCCTTCTCAAAGACTTAGAATTAACTTGACGCGAAGAAGACGCAGGAT
AAACAAGCTCTTAATTCATACCACTTCGCCTTCAAGACGTAATAAACTCA
CAAAAGAGCTAATTTCAATTGAAGTAAGACTTCAAAAAgcttataaacat
tcatctcaATTTGAAGAAGATAGAGCAATAAAAGCAATCAAGAAAAACCC
AAAATACTTCTACTCATATGCAAAACAATttgcaaaagtcaaaaacaaaa
ttggacCGCTAATTGATGGAGAAAACCTTATCAGTGATCCaaaaaagatg
gca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011644XLOC_011644Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020747-proteinTCONS_00020747-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020747-exon-sc0000365-1491911889:154687..155142TCONS_00020747-exon-sc0000365-1491911889:154687..155142Clytia hemisphaericaexon
TCONS_00020747-exon-sc0000365-1510915933:154687..155142TCONS_00020747-exon-sc0000365-1510915933:154687..155142Clytia hemisphaericaexon
TCONS_00020747-exon-sc0000365-1575043694:154687..155142TCONS_00020747-exon-sc0000365-1575043694:154687..155142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:154687..155142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37225	1.35905	4.87891	2.24878	3.64439	0.901482	2.40064	1.55593	0.605191	1.02053	1.45521	0.860939	0.382107	0.496028	0	0.849865	0.53913	1.2157	0.610747	0.319551	0.69437	1.62571	0.823443	0.598903	0.925285	1.87953	1.37866	0.420384	1.11596	1.13699
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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