TCONS_00020748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020748
Unique NameTCONS_00020748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020748 ID=TCONS_00020748|Name=TCONS_00020748|organism=Clytia hemisphaerica|type=transcript|length=292bp
TCTGCATTCTTGCCTTGCTCGAGTAGAGATAGAATCTCATCGTAGTGTGA
CAAAAGTTGACTGAGGCATGATCTGCCAGAGCGAAATCCATGTTGATTTG
CATTGAATAAATTGTTCTCTTCAATAAAGTGTGTCATATGCTTTCGaaga
atcttttcaaaaatctttattaGGTGTGAGGTGAGAGCTACTGGGCGATA
TCTTTCGGGTTGAGTTCGATTTCCTCCTTTGTGGATAGGTACAATGAGAG
ATTTCTTTAGAGTTTCAGGGGTCTTTCCAGTATCGAGGCATT
Run BLAST on NCBI

transcript from alignment at sc0000365:155500..155791

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020748 ID=TCONS_00020748|Name=TCONS_00020748|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0000365:155500..155791 (Clytia hemisphaerica)
AATGCCTCGATACTGGAAAGACCCCTGAAACTCTAAAGAAATCTCTCATT
GTACCTATCCACAAAGGAGGAAATCGAACTCAACCCGAAAGATATCGCCC
AGTAGCTCTCACCTCACACCtaataaagatttttgaaaagattcttCGAA
AGCATATGACACACTTTATTGAAGAGAACAATTTATTCAATGCAAATCAA
CATGGATTTCGCTCTGGCAGATCATGCCTCAGTCAACTTTTGTCACACTA
CGATGAGATTCTATCTCTACTCGAGCAAGGCAAGAATGCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011645XLOC_011645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020748-exon-sc0000365-1491911889:155500..155791TCONS_00020748-exon-sc0000365-1491911889:155500..155791Clytia hemisphaericaexon
TCONS_00020748-exon-sc0000365-1510915933:155500..155791TCONS_00020748-exon-sc0000365-1510915933:155500..155791Clytia hemisphaericaexon
TCONS_00020748-exon-sc0000365-1575043694:155500..155791TCONS_00020748-exon-sc0000365-1575043694:155500..155791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000365supercontigsc0000365:155500..155791 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.95783	4.2092	6.26899	2.44407	3.85483	1.81603	2.86807	1.7557	1.62068	4.12403	4.31634	2.6506	1.35707	4.01008	2.17727	2.87233	3.04472	1.80613	2.71733	2.71258	2.88343	2.41103	1.03869	0.949836	1.54688	0	1.45985	1.95943	2.06147	1.77148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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