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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020790 ID=TCONS_00020790|Name=TCONS_00020790|organism=Clytia hemisphaerica|type=transcript|length=2835bpRun BLAST on NCBI transcript from alignment at sc0000370:124680..185839+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020790 ID=TCONS_00020790|Name=TCONS_00020790|organism=Clytia hemisphaerica|type=transcript|length=61160bp|location=Sequence derived from alignment at sc0000370:124680..185839+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020790 vs. Swiss-Prot (Human)
Match: DNLI4 (DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2) HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0 Identity = 383/923 (41.50%), Postives = 551/923 (59.70%), Query Frame = 2
Query: 71 TATSKTIASEVPFHDFAVLCEKISKTQGKERKKALMQKFIGHWRRSHQKMHGNQKTV---------------------------VLAKYYIEALGLSKDSTDAKKLLNYRAPNSAKQEAGDFASVAFVILKSRCPEQGSMTIENINNALDSIAQANVEKERDTAKATILKVIRTTSALEQKWFIRVMLKEMKFGLNENSIFPLYHKDALELFNVCNSLSKVCLDLHDENIELNETEISLFTPFRPMLGQRVVLEDVEKLMHHRHFIIETKIDGERMQMHKNEDEYRYFSRNSNDYSENFGITKYRGSFTPHVTHLFKEDIKTCILDGEMVGFDDEIDNFVLKGSNIDIK-----SDHLVGVHPCFVVFDVLMVNGENLANVPLEDRIKRTETLFDSERGRLEIVERKLGKSKEDVINSINKAVDKREEGIVIKDPSSIYKPSKRKGSGWLKLKPEYVDAXXXXXXXXXXXXXXXXXXXXXXMISHFLLGVAVTPDTPGERPTKFMTFGKVGSGYSDKELKSICDQLNPHWKKF--QGPTSSIIFTDGCKEKPDVVIEPRDSIIVQIKASEITPSDKYKCQCTMRFPRMERVRDDKSWFECMTFDELEEMKKMADGRLSYKQ-KVSGDAEDTEDGPSSKKKRRTVLRVERPRSVAQHLKGADITDIQEVSNWLNETEFCVINGPTEFSKQKLEQFIVENGGTFVQNPTAETKCVIVEKTNFRAKNIISRENVDVVKASWFIRCLEEKQMNTYQPSDIIFATETTKSTFNQNYDQYGDHYTQDIENPNELKQIFDGINVDSEKNHIQVSD-IASIEQRYFHGTSKYSIFRRCRLFVPTAEVPN-YPYKN---MMEFVSLEYCLHGGTIVRNIDQATHILLSQSDDLAFQDIRAIIRTKRVKPQVITELWIRDSIDQNKMLEERPY 2719
+ TS+T+AS VPF D E+I K++G+ K ++F+ WR+ H +H N K V +LAK YIE L L +D DA KLLNYR P +AGDFA +A+ +LK RC ++GS+TI+ +N+ LDSIA N K +D K ++L++I +SALEQKW IR+++K++K G+++ +IF ++H DA EL NV L KVC LHD ++ L++ I+LF+ F+PML +E +EK M H+ F IETK+DGERMQMHK+ D Y+YFSRN +Y++ FG + GS TP + + FK DI+ CILDGEM+ ++ F+ KG+ DIK SD + C+ VFDVLMVN + L + L R + ++F GR+EIV++ +K +VI+++N+A+DKREEGI++K P SIYKP KR G GWLK+KPEYV D I++ G Y RGGM+SHFL VA P PGE+P+ F T +VGSG + KEL + +L +WK F + P SSI+ EKP+V IEP +S+IVQIKA+EI PSD YK CT+RFPR+E++RDDK W ECMT D+LE+++ A G+L+ K + GD E E KKR+ ++++ + +HLK ++T++ ++SN + EFCV++G K LE I E GG VQNP +T CVI N R KNII DVVK +W + C + K +QP +I +TK F + YD YGD Y D + N+LK++F GI +E+ +++ IA +E RY S S+FRR +++ + V N KN + +LE HG +V + + ++ D D +A RT + K +++ E W+ DSID+ ++ EE Y
Sbjct: 4 SQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFREFLDSWRKFHDALHKNHKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKKSLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISITLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQMHKDGDVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFMQKGTKFDIKRMVEDSD----LQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIEIVQKTQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKR-GEGWLKIKPEYVSG-LMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKP-PPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCG---TEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGGDDEPQE------KKRKAAPKMKKVIGIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDT-DLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQY 909 The following BLAST results are available for this feature:
BLAST of TCONS_00020790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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