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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020794 ID=TCONS_00020794|Name=TCONS_00020794|organism=Clytia hemisphaerica|type=transcript|length=486bp
aagaaatgaaaactcTAAAGGtagtaaaaataagaaaatttaagaacCTT
TTAGGctagaacatctgaaggcttcattGATTATGAatgtttctataaaa
aaacttgtacgtCTATTCTTTGTACACGAACTTTTCAACAACAAGAGGCT
CATCGGTGCATGCCAATCTTTCTGAGCTTGTGTAAGAGCACGTGACATCT
GACGTAATGTTTACATCACATCTAGTGAAAtgtgccaaaaacattttcaa
tacaTTGATCATAACTCTATCAGCTGGACATTTATGATTGTTGACTGTAG
GTTCCATGACAAGAGGAGACCCAAAACACACATTTTGATTCTCGATAATC
TTCCTATCACGGgtcattttcaatttgaaaggaTCCTCAAAAACTTCTTC
ATCTCGATGAATGGCGTAAACGAAAGTACATAGTAAATCATCTTTATGGA
TTTGATATCGCCCTGTTTtggatttcattacaaaat Run BLAST on NCBI transcript from alignment at sc0000370:15004..16333- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020794 ID=TCONS_00020794|Name=TCONS_00020794|organism=Clytia hemisphaerica|type=transcript|length=1330bp|location=Sequence derived from alignment at sc0000370:15004..16333- (Clytia hemisphaerica)
AAGAAATGAAAACTCTAAAGGTAGTAAAAATAAGAAAATTTAAGAACCTT
TTAGGCTAGAACATCTGAAGGCTTCATTGATTATGAATGTTTCTATAAAA
AAACTTGTACGTCTATTCTTTGTACACGAACTTTTCAACAACAAGAGGCT
CATCGGTGCATGCCAATCTTTCTGAGCTTGTGTAAGAGCACGTGACATCT
GACGTAATGTTTACATCACATCTAGTGAAATGTGCCAAAAACATTTTCAA
TACATTGATCATAACTCTATCAGCTGGACATTTATGATTGTTGACTGTAG
GTTCCATGACAAGAGGAGACCCAAAACACACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGCTTCATTGATTATGAATGTTTCTATAAGAAAACTT
GTACGTCTATTCTTTGTACACGAACTTTTCAACAACAAGAGGCTCATCGG
TGCATGCCAATCTTTCTGAGCTTGTGTAAGAGCACGTGACATCTGACGTA
ATGTTTACATCACATCTAGTGAAATGTGCCAGAAACATTTTCAATACATT
GATCATAACTCTAGCAGCTGGACATTTATGATTGTTGGCTGTAGGTTCCA
TGACAAGAGGAGACCCAAAACACACATTTTGATTCTCGATAATCTTCCTA
TCACGGGTCATTTTCAATTTGAAAGGATCCTCAAAAACTTCTTCATCTCG
ATGAATGGCGTAAACGAAAGTACATAGTAAATCATCTTTATGGATTTGAT
ATCGCCCTGTTTTGGATTTCATTACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020794-exon-sc0000370-1575043694:16034..16333 | TCONS_00020794-exon-sc0000370-1575043694:16034..16333 | Clytia hemisphaerica | exon |
| TCONS_00020794-exon-sc0000370-1575043694:15004..15189 | TCONS_00020794-exon-sc0000370-1575043694:15004..15189 | Clytia hemisphaerica | exon |
| TCONS_00020794-exon-sc0000370-1510915933:16034..16333 | TCONS_00020794-exon-sc0000370-1510915933:16034..16333 | Clytia hemisphaerica | exon |
| TCONS_00020794-exon-sc0000370-1510915933:15004..15189 | TCONS_00020794-exon-sc0000370-1510915933:15004..15189 | Clytia hemisphaerica | exon |
| TCONS_00020794-exon-sc0000370-1491911889:16034..16333 | TCONS_00020794-exon-sc0000370-1491911889:16034..16333 | Clytia hemisphaerica | exon |
| TCONS_00020794-exon-sc0000370-1491911889:15004..15189 | TCONS_00020794-exon-sc0000370-1491911889:15004..15189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:15004..16333 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001128 | Cyt_P450 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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