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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020807 ID=TCONS_00020807|Name=TCONS_00020807|organism=Clytia hemisphaerica|type=transcript|length=1481bp
gtgtattgtatttggtgtttgtgttttttgtAGTTGAATTGTAGCTGATA
AAAAGATGtaataagaaaaacaacaagtttaaaaaaaaatttatttatga
taaaaGATGGATTTCAAGATTTTCTTGTTGGAGTTATTCCTTCTCGTGAC
ATTGCTTGAAGACATTGAATGCACAAATAATTTAACGACGCAAGCACAAC
CAAGGAATACAACGTCAAGTCTAACCAAAGATAACATCACAACTACACGA
TTAGACGATACCAACGACCAAACAACTTCTTCACCAAAACCTTTGCAAAG
AAACCTCACAAGACAAACACCGTTACATCCGCATGAAAACATCACAACTG
TATCGCTGAACGACACTCAACCAACATCAACGATTAAAACGACGTCGCCG
ATCAACAATCCTCGTGCAACGAATTTGTCTCAAACAAATCTAACAACGCC
AGTGACAATAACACAGAACGACACTCGAACAACATATCCACCAGCAAATT
TAACAACTGTACCAATCAACTACACTCGTCTAACAAACTCATctcaagaa
aaaattacgacACCGACAGTAACGACGGAAGTCAAAACAACGACGCAGTC
AGGATATAATACTACAGTGACACAGACTGAAAAAACAAGAGAAACTACTA
AAAAGGCTATAGAATCGACTTCACAGCCAACAATAACAAAAGCAACAAAA
CTGATAAGGACAACAGTTCTAAAAACATCCACAACGACGTATGCAGAATC
ACATCACGGAATGATTGCTGGTGTTATCATTGGTATTATCGTATCTTTCA
CAGTCGTGGTTGCCATCTTTATACAAAAGAATTTCCCTGTACCAGGCTAC
ACAGGAGGTGCAATGGAAGGATTAGAAGTACTGGTGGGAGGATGTTTGAC
GTGTGAGTGTTGTAGAACAAACCATAAGAACAAAGCGGAACACGTGCTTT
CACAGATtctttgaaagttttggaagaaaatttatCTGGAAGgatgtttt
ttattgtttttttttagagtTTAGTTTCATCGGATTTCTAGTTTTTTATT
GTTGTAAATATATGAATTtgacaaatttcaaaatctctCCATGGTGATGT
ACAGGCAAGGTTTTAAAGTGATATTAAGCCCCCATCCCTAATTTCAGTTC
ATCTGCCCACACTGCTCAATATCtatgggaagaaattttggcgggaatct
aatttggcgaatggccgaaaaaatttaatttggcgggaacttaatttgga
tCCGCCAAAtcttcttcccgccaaaatttcttcccttaaggtagttaaAA
CAAAGTTTATGAATGAATCAAGCTCGGGCTAACTAAAAAAGGTGATCAAG
CTATAACATTTCAATATATCACCTCTGAAGGAAAAAGGTAATATTGAGTG
GACTCGGGTGGCTTAGGTTCACACTTTTCTTTAATCTCGTGATCATGTTT
TAACGACAGTTTCCATGGGAGATCATATAAA Run BLAST on NCBI protein sequence of TCONS_00020807-protein >TCONS_00020807-protein ID=TCONS_00020807-protein|Name=TCONS_00020807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MDFKIFLLELFLLVTLLEDIECTNNLTTQAQPRNTTSSLTKDNITTTRLD
DTNDQTTSSPKPLQRNLTRQTPLHPHENITTVSLNDTQPTSTIKTTSPIN
NPRATNLSQTNLTTPVTITQNDTRTTYPPANLTTVPINYTRLTNSSQEKI
TTPTVTTEVKTTTQSGYNTTVTQTEKTRETTKKAIESTSQPTITKATKLI
RTTVLKTSTTTYAESHHGMIAGVIIGIIVSFTVVVAIFIQKNFPVPGYTG
GAMEGLEVLVGGCLTCECCRTNHKNKAEHVLSQIL Run BLAST on NCBI transcript from alignment at sc0000370:287116..289877- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020807 ID=TCONS_00020807|Name=TCONS_00020807|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at sc0000370:287116..289877- (Clytia hemisphaerica)
GTGTATTGTATTTGGTGTTTGTGTTTTTTGTAGTTGAATTGTAGCTGATA
AAAAGATGTAATAAGAAAAACAACAAGTTTAAAAAAAAATTTATTTATGA
TAAAAGATGGATTTCAAGATTTTCTTGTTGGAGTTATTCCTTCTCGGTAA
AGTTTTATCTTTTTATTGATCTGATTCACTAATGGATGGTATCTAGGTAC
TGAATAAGGTTTTTGGTGAGGAAGAAATATCGACCTGACCAAGGCAAATC
GATAAATTGGTTATAATCTTTCTCAAAAAATTGTGTTCGAGATCTCGGCA
ATGTACCATTTATATATCTGCAATGTATCATACAGATTGTAGATTGTAAT
AAGTCAATTTATAACTTTAATTTCTTATATTTGCTACTTTGTAGTGACAT
TGCTTGAAGACATTGAATGCACAAATAATTTAACGACGCAAGCACAACCA
AGGAATACAACGTCAAGTCTAACCAAAGATAACATCACAACTACACGATT
AGACGATACCAACGACCAAACAACTTCTTCACCAAAACCTTTGCAAAGAA
ACCTCACAAGACAAACACCGTTACATCCGCATGAAAACATCACAACTGTA
TCGCTGAACGACACTCAACCAACATCAACGATTAAAACGACGTCGCCGAT
CAACAATCCTCGTGCAACGAATTTGTCTCAAACAAATCTAACAACGCCAG
TGACAATAACACAGAACGACACTCGAACAACATATCCACCAGCAAATTTA
ACAACTGTACCAATCAACTACACTCGTCTAACAAACTCATCTCAAGAAAA
AATTACGACACCGACAGTAACGACGGAAGTCAAAACAACGACGCAGTCAG
GATATAATACTACAGTGACACAGACTGAAAAAACAAGAGAAACTACTAAA
AAGGCTATAGAATCGACTTCACAGCCAACAATAACAAAAGCAACAAAACT
GATAAGGACAACAGTTCTAAAAACATCCACAACGACGTATGCAGGTAAAA
TCTTAAGATTATTCGAGCGTTCCTTTACTTAGACACAAATATGCACTATA
CACCTTTTCAACCGTAGCCGCCAATTATCGCGCAGGTATTTTTTTGTCCA
TTTTATCCACTCTAAAATCGTCCCAGTCTATTTTTCGCACCTAAAGACAG
TAGAAAAAAGTGTTAAATAAGGATTGGATCGAGTTGGATTGTAAATTAAA
TAATAGAGTGACACGCGCCTAACCACGCGACTACGATCGAAAAGGTGTAT
TAGGAAGTTCTTTTAATCATAAGTTCCCTTTCAAATTTAATATTGGACAG
TAGTACCACAATCAAAAGTAAACTGACTCAGACTTTTAACACGAATTGTT
GAAACGTTGGTCATTGACGACTTAGTGAAAAAATTGTTGAAAAGATTTTG
TTGAACAGAGAAAAGTTGGGATGTAAACTTTTTCAAGTTCCCTGTGTCTA
CCCATTAAAACAATGAAAGGCCTAGTTGAATGAATGCCATTGTGATTTGA
CCTTTGTGATGAAATGGGATCTCAAATTAGCATTGCCAGCGATCCAAGAA
ATCAAATGCGAGGCAGGAAATCAGGTCACAAATTTGATGTTAGGGTGGGC
ATGTGAGTTTGATTATATTCTGGTTATCTAGAAGAAATTCTTTTGAAGTA
GATAGAAGGTCCCATCGGGCGTTTTATGTTACAGAGCAGCGGGTATATAC
CCCCTGTGTCACAAACCCACTGGAACCCCAGCCCAACTGGAAAGTTTGGT
AAAAATTTCGTCCCCGGTGGGAAAAAACCCTGTAATTTCAGCCCCACTGG
GAAATTGACTTTGATTTCGTCTGCATTCATAATATTCCATGTCTAAAAAT
TGCAATCCAAAACAATCCCCACCGGATTTTTTACCCTTTGAACAATAGAA
TTTCTATCCCCATTGAGATTTCAACAGGAATTTTTTTTCACTGAGGAAAA
AGTTCCATCGGGGCTATGAGACAGCTGTGTGTATATGTAATTATCATTAA
CTCCATATAACAAATTCTTGTCTTTAGAATCACATCACGGAATGATTGCT
GGTGTTATCATTGGTATTATCGTATCTTTCACAGTCGTGGTTGCCATCTT
TATACAAAAGAATTTCCCTGTACCAGGCTACACAGGAGGTGCAATGGAAG
GATTAGAAGTACTGGTGGGAGGATGTTTGACGTGTGAGTGTTGTAGAACA
AACCATAAGAACAAAGCGGAACACGTGCTTTCACAGATTCTTTGAAAGTT
TTGGAAGAAAATTTATCTGGAAGGATGTTTTTTATTGTTTTTTTTTAGAG
TTTAGTTTCATCGGATTTCTAGTTTTTTATTGTTGTAAATATATGAATTT
GACAAATTTCAAAATCTCTCCATGGTGATGTACAGGCAAGGTTTTAAAGT
GATATTAAGCCCCCATCCCTAATTTCAGTTCATCTGCCCACACTGCTCAA
TATCTATGGGAAGAAATTTTGGCGGGAATCTAATTTGGCGAATGGCCGAA
AAAATTTAATTTGGCGGGAACTTAATTTGGATCCGCCAAATCTTCTTCCC
GCCAAAATTTCTTCCCTTAAGGTAGTTAAAACAAAGTTTATGAATGAATC
AAGCTCGGGCTAACTAAAAAAGGTGATCAAGCTATAACATTTCAATATAT
CACCTCTGAAGGAAAAAGGTAATATTGAGTGGACTCGGGTGGCTTAGGTT
CACACTTTTCTTTAATCTCGTGATCATGTTTTAACGACAGTTTCCATGGG
AGATCATATAAA Coding sequence (CDS) from alignment at sc0000370:287116..289877- >TCONS_00020807 ID=TCONS_00020807|Name=TCONS_00020807|organism=Clytia hemisphaerica|type=CDS|length=2574bp|location=Sequence derived from alignment at sc0000370:287116..289877- (Clytia hemisphaerica)
AATCACATCACGGAATGATTGCTGGTGTTATCATTGGTATTATCGTATCT
TTCACAGTCGTGGTTGCCATCTTTATACAAAAGAATTTCCCTGTACCAGG
CTACACAGGAGGTGCAATGGAAGGATTAGAAGTACTGGTGGGAGGATGTT
TGACGTGTGAGTGTTGTAGAACAAACCATAAGAACAAAGCGGAACACGTG
CTTTCACAGATTCTTTGATGACATTGCTTGAAGACATTGAATGCACAAAT
AATTTAACGACGCAAGCACAACCAAGGAATACAACGTCAAGTCTAACCAA
AGATAACATCACAACTACACGATTAGACGATACCAACGACCAAACAACTT
CTTCACCAAAACCTTTGCAAAGAAACCTCACAAGACAAACACCGTTACAT
CCGCATGAAAACATCACAACTGTATCGCTGAACGACACTCAACCAACATC
AACGATTAAAACGACGTCGCCGATCAACAATCCTCGTGCAACGAATTTGT
CTCAAACAAATCTAACAACGCCAGTGACAATAACACAGAACGACACTCGA
ACAACATATCCACCAGCAAATTTAACAACTGTACCAATCAACTACACTCG
TCTAACAAACTCATCTCAAGAAAAAATTACGACACCGACAGTAACGACGG
AAGTCAAAACAACGACGCAGTCAGGATATAATACTACAGTGACACAGACT
GAAAAAACAAGAGAAACTACTAAAAAGGCTATAGAATCGACTTCACAGCC
AACAATAACAAAAGCAACAAAACTGATAAGGACAACAGTTCTAAAAACAT
CCACAACGACGTATGCAGATGGATTTCAAGATTTTCTTGTTGGAGTTATT
CCTTCTCGAATCACATCACGGAATGATTGCTGGTGTTATCATTGGTATTA
TCGTATCTTTCACAGTCGTGGTTGCCATCTTTATACAAAAGAATTTCCCT
GTACCAGGCTACACAGGAGGTGCAATGGAAGGATTAGAAGTACTGGTGGG
AGGATGTTTGACGTGTGAGTGTTGTAGAACAAACCATAAGAACAAAGCGG
AACACGTGCTTTCACAGATTCTTTGATGACATTGCTTGAAGACATTGAAT
GCACAAATAATTTAACGACGCAAGCACAACCAAGGAATACAACGTCAAGT
CTAACCAAAGATAACATCACAACTACACGATTAGACGATACCAACGACCA
AACAACTTCTTCACCAAAACCTTTGCAAAGAAACCTCACAAGACAAACAC
CGTTACATCCGCATGAAAACATCACAACTGTATCGCTGAACGACACTCAA
CCAACATCAACGATTAAAACGACGTCGCCGATCAACAATCCTCGTGCAAC
GAATTTGTCTCAAACAAATCTAACAACGCCAGTGACAATAACACAGAACG
ACACTCGAACAACATATCCACCAGCAAATTTAACAACTGTACCAATCAAC
TACACTCGTCTAACAAACTCATCTCAAGAAAAAATTACGACACCGACAGT
AACGACGGAAGTCAAAACAACGACGCAGTCAGGATATAATACTACAGTGA
CACAGACTGAAAAAACAAGAGAAACTACTAAAAAGGCTATAGAATCGACT
TCACAGCCAACAATAACAAAAGCAACAAAACTGATAAGGACAACAGTTCT
AAAAACATCCACAACGACGTATGCAGATGGATTTCAAGATTTTCTTGTTG
GAGTTATTCCTTCTCGAATCACATCACGGAATGATTGCTGGTGTTATCAT
TGGTATTATCGTATCTTTCACAGTCGTGGTTGCCATCTTTATACAAAAGA
ATTTCCCTGTACCAGGCTACACAGGAGGTGCAATGGAAGGATTAGAAGTA
CTGGTGGGAGGATGTTTGACGTGTGAGTGTTGTAGAACAAACCATAAGAA
CAAAGCGGAACACGTGCTTTCACAGATTCTTTGATGACATTGCTTGAAGA
CATTGAATGCACAAATAATTTAACGACGCAAGCACAACCAAGGAATACAA
CGTCAAGTCTAACCAAAGATAACATCACAACTACACGATTAGACGATACC
AACGACCAAACAACTTCTTCACCAAAACCTTTGCAAAGAAACCTCACAAG
ACAAACACCGTTACATCCGCATGAAAACATCACAACTGTATCGCTGAACG
ACACTCAACCAACATCAACGATTAAAACGACGTCGCCGATCAACAATCCT
CGTGCAACGAATTTGTCTCAAACAAATCTAACAACGCCAGTGACAATAAC
ACAGAACGACACTCGAACAACATATCCACCAGCAAATTTAACAACTGTAC
CAATCAACTACACTCGTCTAACAAACTCATCTCAAGAAAAAATTACGACA
CCGACAGTAACGACGGAAGTCAAAACAACGACGCAGTCAGGATATAATAC
TACAGTGACACAGACTGAAAAAACAAGAGAAACTACTAAAAAGGCTATAG
AATCGACTTCACAGCCAACAATAACAAAAGCAACAAAACTGATAAGGACA
ACAGTTCTAAAAACATCCACAACGACGTATGCAGATGGATTTCAAGATTT
TCTTGTTGGAGTTATTCCTTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020807-exon-sc0000370-1575043694:289732..289877 | TCONS_00020807-exon-sc0000370-1575043694:289732..289877 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1575043694:288884..289483 | TCONS_00020807-exon-sc0000370-1575043694:288884..289483 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1575043694:287116..287850 | TCONS_00020807-exon-sc0000370-1575043694:287116..287850 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1510915933:289732..289877 | TCONS_00020807-exon-sc0000370-1510915933:289732..289877 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1510915933:288884..289483 | TCONS_00020807-exon-sc0000370-1510915933:288884..289483 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1510915933:287116..287850 | TCONS_00020807-exon-sc0000370-1510915933:287116..287850 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1491911889:289732..289877 | TCONS_00020807-exon-sc0000370-1491911889:289732..289877 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1491911889:288884..289483 | TCONS_00020807-exon-sc0000370-1491911889:288884..289483 | Clytia hemisphaerica | exon |
| TCONS_00020807-exon-sc0000370-1491911889:287116..287850 | TCONS_00020807-exon-sc0000370-1491911889:287116..287850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:287116..289877 - |
Blast
The following BLAST results are available for this feature:
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