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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020809 ID=TCONS_00020809|Name=TCONS_00020809|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CTATTTTATAAGTAAGTGGCGAGTTATTGACTTCTTATCGGTTTTTAACA
ATACAGTAGCGCTTTGTGGTAGTATCGGCAAAAATTTTTTATATATGGTA
TTTACTTTTCAGAACGATGTCAAAATATCCACCAATTGATTCTTCATCTT
ATCAAAAGGCTGTGAAAGCAGCATGGGGAGTACCTTTTGATATCAAGCAA
TGTTTTCCAGAGGAGATTTCAAATTGGATTACCTACAAAGCTACTATCCT
GGGTGTTCCAAAGTCCTATCTTGCGATCCCACTGATCATTGGAACAGCTT
ATTGTGCTCAACACGCGACGATTTCCTACGAAGATCTTCATTGCGAGCCT
GTCATTCTTTATGGCTTGGTAGTTGGTCGTTCGGGTACCAATAAAAGCGC
TTCTCTGAAGATAATCCTAGATATGATCAGTTCAATCGATAACTTATCCG
GCAATCTACCACACACTTTCGATACGGGAACCCTTGAAGGCTTGATGAAG
TCACTTCAAGACAACGATGGTTGTTTAATGGCAGTCCATGATGAATTTGC
ATCTTTCAATGATGCCTTGGATAAAGGATCGTCAGGTTCCAGTGAAAAAT
CTCGCTACTTATCATTATATTCtggaacaagttggtcaaagaACACTAAA
ACTAAAGGAAAGTCTGATGTTATCGATCCACGGTTGAGCTTGATAGCGTA
TACGCAACCCTATTATGCAACCCAGTTCGCAAGAAATAACTTCTACGATg
ggttttttcaaagattcctgtTATCGATGCCAGATGAAGTCTTCATTTCA
ATGAAGGATAAGAAGTTATGCATGGCTGAAAAACAAAACCTCATCGATAT
GAAAAACGTTTTATCTACAATCTATACCGAATGTCGCAAAGAACCTAAAG
ATATGCAACTAAATAATGAAGCTATGGATTGTATGATAAATATCACGATG
AAATCGtcgagtttatgaaaaatgatcGTTTTGAAGAAGCAAAGTTGAGC
GTCAAGAGTAAATCATTGGGTATGATTATGCGTATTGCATCAACAATTTG
TCTTTTGCGTAACGCTTGCACTGGGAATATCAGCACCGTTGTAACCAAGG
CAGATGTAACCATGGCTAAAAACATAGCTGACTGTTCAGTAGCGACGGCT
TTTGCATTGTTACAAAACGATGCACAATCGAGCTGGAAAAAAGAGCAAAT
TCGTCAACCACCATTGCCAGAAGCAGGAAATCTAACAATGGAATACCTGG
TCCCGTATCACCATAAAGTAAGGAAG Run BLAST on NCBI protein sequence of TCONS_00020809-protein >TCONS_00020809-protein ID=TCONS_00020809-protein|Name=TCONS_00020809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSKYPPIDSSSYQKAVKAAWGVPFDIKQCFPEEISNWITYKATILGVPKS
YLAIPLIIGTAYCAQHATISYEDLHCEPVILYGLVVGRSGTNKSASLKII
LDMISSIDNLSGNLPHTFDTGTLEGLMKSLQDNDGCLMAVHDEFASFNDA
LDKGSSGSSEKSRYLSLYSGTSWSKNTKTKGKSDVIDPRLSLIAYTQPYY
ATQFARNNFYDGFFQRFLLSMPDEVFISMKDKKLCMAEKQNLIDMKNVLS
TIYTECRKEPKDMQLNNEAMDCMINITMKSSSL Run BLAST on NCBI transcript from alignment at sc0000370:1..1276 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020809 ID=TCONS_00020809|Name=TCONS_00020809|organism=Clytia hemisphaerica|type=transcript|length=1276bp|location=Sequence derived from alignment at sc0000370:1..1276 (Clytia hemisphaerica)
CTTCCTTACTTTATGGTGATACGGGACCAGGTATTCCATTGTTAGATTTC
CTGCTTCTGGCAATGGTGGTTGACGAATTTGCTCTTTTTTCCAGCTCGAT
TGTGCATCGTTTTGTAACAATGCAAAAGCCGTCGCTACTGAACAGTCAGC
TATGTTTTTAGCCATGGTTACATCTGCCTTGGTTACAACGGTGCTGATAT
TCCCAGTGCAAGCGTTACGCAAAAGACAAATTGTTGATGCAATACGCATA
ATCATACCCAATGATTTACTCTTGACGCTCAACTTTGCTTCTTCAAAACg
atcatttttcataaactcgaCGATTTCATCGTGATATTTATCATACAATC
CATAGCTTCATTATTTAGTTGCATATCTTTAGGTTCTTTGCGACATTCGG
TATAGATTGTAGATAAAACGTTTTTCATATCGATGAGGTTTTGTTTTTCA
GCCATGCATAACTTCTTATCCTTCATTGAAATGAAGACTTCATCTGGCAT
CGATAacaggaatctttgaaaaaacccATCGTAGAAGTTATTTCTTGCGA
ACTGGGTTGCATAATAGGGTTGCGTATACGCTATCAAGCTCAACCGTGGA
TCGATAACATCAGACTTTCCTTTAGTTTTAGTGTtctttgaccaacttgt
tccaGAATATAATGATAAGTAGCGAGATTTTTCACTGGAACCTGACGATC
CTTTATCCAAGGCATCATTGAAAGATGCAAATTCATCATGGACTGCCATT
AAACAACCATCGTTGTCTTGAAGTGACTTCATCAAGCCTTCAAGGGTTCC
CGTATCGAAAGTGTGTGGTAGATTGCCGGATAAGTTATCGATTGAACTGA
TCATATCTAGGATTATCTTCAGAGAAGCGCTTTTATTGGTACCCGAACGA
CCAACTACCAAGCCATAAAGAATGACAGGCTCGCAATGAAGATCTTCGTA
GGAAATCGTCGCGTGTTGAGCACAATAAGCTGTTCCAATGATCAGTGGGA
TCGCAAGATAGGACTTTGGAACACCCAGGATAGTAGCTTTGTAGGTAATC
CAATTTGAAATCTCCTCTGGAAAACATTGCTTGATATCAAAAGGTACTCC
CCATGCTGCTTTCACAGCCTTTTGATAAGATGAAGAATCAATTGGTGGAT
ATTTTGACATCGTTCTGAAAAGTAAATACCATATATAAAAAATTTTTGCC
GATACTACCACAAAGCGCTACTGTATTGTTAAAAACCGATAAGAAGTCAA
TAACTCGCCACTTACTTATAAAATAG Coding sequence (CDS) from alignment at sc0000370:1..1276 >TCONS_00020809 ID=TCONS_00020809|Name=TCONS_00020809|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000370:1..1276 (Clytia hemisphaerica)
tcataaactcgaCGATTTCATCGTGATATTTATCATACAATCCATAGCTT
CATTATTTAGTTGCATATCTTTAGGTTCTTTGCGACATTCGGTATAGATT
GTAGATAAAACGTTTTTCATATCGATGAGGTTTTGTTTTTCAGCCATGCA
TAACTTCTTATCCTTCATTGAAATGAAGACTTCATCTGGCATCGATAaca
ggaatctttgaaaaaacccATCGTAGAAGTTATTTCTTGCGAACTGGGTT
GCATAATAGGGTTGCGTATACGCTATCAAGCTCAACCGTGGATCGATAAC
ATCAGACTTTCCTTTAGTTTTAGTGTtctttgaccaacttgttccaGAAT
ATAATGATAAGTAGCGAGATTTTTCACTGGAACCTGACGATCCTTTATCC
AAGGCATCATTGAAAGATGCAAATTCATCATGGACTGCCATTAAACAACC
ATCGTTGTCTTGAAGTGACTTCATCAAGCCTTCAAGGGTTCCCGTATCGA
AAGTGTGTGGTAGATTGCCGGATAAGTTATCGATTGAACTGATCATATCT
AGGATTATCTTCAGAGAAGCGCTTTTATTGGTACCCGAACGACCAACTAC
CAAGCCATAAAGAATGACAGGCTCGCAATGAAGATCTTCGTAGGAAATCG
TCGCGTGTTGAGCACAATAAGCTGTTCCAATGATCAGTGGGATCGCAAGA
TAGGACTTTGGAACACCCAGGATAGTAGCTTTGTAGGTAATCCAATTTGA
AATCTCCTCTGGAAAACATTGCTTGATATCAAAAGGTACTCCCCATGCTG
CTTTCACAGCCTTTTGATAAGATGAAGAATCAATTGGTGGATATTTTGAC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020809-exon-sc0000370-1491911889:1..1276 | TCONS_00020809-exon-sc0000370-1491911889:1..1276 | Clytia hemisphaerica | exon |
| TCONS_00020809-exon-sc0000370-1510915933:1..1276 | TCONS_00020809-exon-sc0000370-1510915933:1..1276 | Clytia hemisphaerica | exon |
| TCONS_00020809-exon-sc0000370-1575043694:1..1276 | TCONS_00020809-exon-sc0000370-1575043694:1..1276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:1..1276 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025048 | DUF3987 |
Blast
The following BLAST results are available for this feature:
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