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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020813 ID=TCONS_00020813|Name=TCONS_00020813|organism=Clytia hemisphaerica|type=transcript|length=1068bp
GTCTCTCTAATGTACATAAGTACATGGCCGCCCTAAAGGCGATCTTTTGT
GGGAAAACGTGTTCTCTGTAACTAAGAAAACGTAGGTATGCTCGTTCAAT
GTAAACCATAGTTTCAAATCGATGCTCATTTTCTGACATCAAGAAGAGAC
ATTCTCTTTAACTCTTTAAAAACATCATGAATGGTCAACAATTTTGGTTT
TCGATCAGGTGGTATTCTTAAATAAGAACAGACTTCATCTGCATTTTTGT
AATACCAATCTCTGGCATCGGTCCATTTTGATTTATATGTGTTACCACCC
ACAACAATAACAGGGAGATCattttttggttcctttgttttcttgCTTCC
AAAATATTCATCGTCTTCTTCCTCGGATTCATTGTCTTCCAAATTCATCT
TTTCAAGATCTCTCAAAATTTGCGTAGCTGGATTCTTATAAATTCTTAAT
GATTTATGAGGTTTTTTAGGTTGCGGTTTTTCGATaaattctttgacttt
ttgcttTAAGTTTGGATCCATTTGACCACCTTTCATTGATTTCCCACTCT
TGTTTCGAAGAGGTGGTGGTGTGAAATTCCAGATATCAAAAGCACTGACC
CGGGGTTCGGCACCGTAGGCTCGGCCTGTTCGAAGTGGAGCCACGTACAC
GTTCTTCGACTCAAACTGAAAGGTTTCAATTGGAGCGAAATTCGGCTTAT
CCTGTACTTTACGTCTTTGAAGAAGATCTGCTTTGACTTTTGATTCTATC
TCAGCTCTTCTGGTACTGGAAACGCCAAGACATTTTTTAATGCAAACCAT
TTCTTGAATAGTATCTTTACGGAATCTCTTGTCATCGTTCAAGACATAAC
GCTCACAAATAGTCTGTAGGTCATAGTCGTTAGCCATATTTTCCCTTATT
TTTCCATATGCCTCTTTAGCTTTGTAGTTGAAATGCAGATGGTCTCGttt
atcaaaatattgattttgggttttcaaaacTGATTGTAAAATACATGAAA
TTTCAAATAGAACTAGCTCTTAAAAATATAGCTCTTGAACAtccaatatt
tttacaaaaatacaaaat Run BLAST on NCBI protein sequence of TCONS_00020813-protein >TCONS_00020813-protein ID=TCONS_00020813-protein|Name=TCONS_00020813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MANDYDLQTICERYVLNDDKRFRKDTIQEMVCIKKCLGVSSTRRAEIESK
VKADLLQRRKVQDKPNFAPIETFQFESKNVYVAPLRTGRAYGAEPRVSAF
DIWNFTPPPLRNKSGKSMKGGQMDPNLKQKVKEFIEKPQPKKPHKSLRIY
KNPATQILRDLEKMNLEDNESEEEDDEYFGSKKTKEPKNDLPVIVVGGNT
YKSKWTDARDWYYKNADEVCSYLRIPPDRKPKLLTIHDVFKELKRMSLLD
VRK Run BLAST on NCBI transcript from alignment at sc0000370:85905..86972 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020813 ID=TCONS_00020813|Name=TCONS_00020813|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at sc0000370:85905..86972 (Clytia hemisphaerica)
attttgtatttttgtaaaaatattggaTGTTCAAGAGCTATATTTTTAAG
AGCTAGTTCTATTTGAAATTTCATGTATTTTACAATCAgttttgaaaacc
caaaatcaatattttgataaaCGAGACCATCTGCATTTCAACTACAAAGC
TAAAGAGGCATATGGAAAAATAAGGGAAAATATGGCTAACGACTATGACC
TACAGACTATTTGTGAGCGTTATGTCTTGAACGATGACAAGAGATTCCGT
AAAGATACTATTCAAGAAATGGTTTGCATTAAAAAATGTCTTGGCGTTTC
CAGTACCAGAAGAGCTGAGATAGAATCAAAAGTCAAAGCAGATCTTCTTC
AAAGACGTAAAGTACAGGATAAGCCGAATTTCGCTCCAATTGAAACCTTT
CAGTTTGAGTCGAAGAACGTGTACGTGGCTCCACTTCGAACAGGCCGAGC
CTACGGTGCCGAACCCCGGGTCAGTGCTTTTGATATCTGGAATTTCACAC
CACCACCTCTTCGAAACAAGAGTGGGAAATCAATGAAAGGTGGTCAAATG
GATCCAAACTTAaagcaaaaagtcaaagaatttATCGAAAAACCGCAACC
TAAAAAACCTCATAAATCATTAAGAATTTATAAGAATCCAGCTACGCAAA
TTTTGAGAGATCTTGAAAAGATGAATTTGGAAGACAATGAATCCGAGGAA
GAAGACGATGAATATTTTGGAAGcaagaaaacaaaggaaccaaaaaatGA
TCTCCCTGTTATTGTTGTGGGTGGTAACACATATAAATCAAAATGGACCG
ATGCCAGAGATTGGTATTACAAAAATGCAGATGAAGTCTGTTCTTATTTA
AGAATACCACCTGATCGAAAACCAAAATTGTTGACCATTCATGATGTTTT
TAAAGAGTTAAAGAGAATGTCTCTTCTTGATGTCAGAAAATGAGCATCGA
TTTGAAACTATGGTTTACATTGAACGAGCATACCTACGTTTTCTTAGTTA
CAGAGAACACGTTTTCCCACAAAAGATCGCCTTTAGGGCGGCCATGTACT
TATGTACATTAGAGAGAC Coding sequence (CDS) from alignment at sc0000370:85905..86972 >TCONS_00020813 ID=TCONS_00020813|Name=TCONS_00020813|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000370:85905..86972 (Clytia hemisphaerica)
ATGGCTAACGACTATGACCTACAGACTATTTGTGAGCGTTATGTCTTGAA
CGATGACAAGAGATTCCGTAAAGATACTATTCAAGAAATGGTTTGCATTA
AAAAATGTCTTGGCGTTTCCAGTACCAGAAGAGCTGAGATAGAATCAAAA
GTCAAAGCAGATCTTCTTCAAAGACGTAAAGTACAGGATAAGCCGAATTT
CGCTCCAATTGAAACCTTTCAGTTTGAGTCGAAGAACGTGTACGTGGCTC
CACTTCGAACAGGCCGAGCCTACGGTGCCGAACCCCGGGTCAGTGCTTTT
GATATCTGGAATTTCACACCACCACCTCTTCGAAACAAGAGTGGGAAATC
AATGAAAGGTGGTCAAATGGATCCAAACTTAaagcaaaaagtcaaagaat
ttATCGAAAAACCGCAACCTAAAAAACCTCATAAATCATTAAGAATTTAT
AAGAATCCAGCTACGCAAATTTTGAGAGATCTTGAAAAGATGAATTTGGA
AGACAATGAATCCGAGGAAGAAGACGATGAATATTTTGGAAGcaagaaaa
caaaggaaccaaaaaatGATCTCCCTGTTATTGTTGTGGGTGGTAACACA
TATAAATCAAAATGGACCGATGCCAGAGATTGGTATTACAAAAATGCAGA
TGAAGTCTGTTCTTATTTAAGAATACCACCTGATCGAAAACCAAAATTGT
TGACCATTCATGATGTTTTTAAAGAGTTAAAGAGAATGTCTCTTCTTGAT
GTCAGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020813-exon-sc0000370-1491911889:85905..86972 | TCONS_00020813-exon-sc0000370-1491911889:85905..86972 | Clytia hemisphaerica | exon |
| TCONS_00020813-exon-sc0000370-1510915933:85905..86972 | TCONS_00020813-exon-sc0000370-1510915933:85905..86972 | Clytia hemisphaerica | exon |
| TCONS_00020813-exon-sc0000370-1575043694:85905..86972 | TCONS_00020813-exon-sc0000370-1575043694:85905..86972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:85905..86972 . |
Blast
The following BLAST results are available for this feature:
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