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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020815 ID=TCONS_00020815|Name=TCONS_00020815|organism=Clytia hemisphaerica|type=transcript|length=821bp
AAAAGGCAAGAAAGGAAGCCACATGGACACAATTTAAAGAAGCTATGCAT
GCCTATTACAAACCAACAGAAAACCTGACCCTCAAGCATTTTCAATTCCG
GTCCTTACACCAAGTTAAGGATGAAGCCTTCATTGCTTTCTGCAATCGCG
TTGAAAAAGAAAGTAACCATTGCCAATTCCAATGTGAGAATGCAAATTGT
ACAGGTGCAACAACCGCAGTCCGTGATCAAATCATAATTGGTACACTGAA
TGGAGAAATTAGAGAGGAGGCACTGAAAAACTCATGGGATCTAAACTCAC
TCCGAAGAGAAGGAATGCGTCTCGAAAGCGCAGTCCACGGAGCATCGGAA
ATTGCAGGCGAAGGAAGCATCAATAGGCTATATGGGAAATACTCCAGAAA
AAACCCGCATAATCCGAAGACACCATCACAGGccccaaacaaaaacaaac
caacagCATGTTTCTTCTGTGGAATAACCGGGAAGAGACAAGATATCATC
ACACATGCAAGAGCATGTCCTGCAAAGACATCTATTTGTAGCAAATGTGA
TAAAATGGGCCATTATTCAAAGGTCTGCAAAAGCAAGCACAATGAGAAAA
ATGCGGTGAACGAAATGCAGGAATCAGAACCAGCAGAGGATGAAAACACA
TCAGTATACAATGTCAATCTCTTTAAGATCACCCACCTAAAAGGAAACAA
CGAGGACTTCAGAACAGAGGTACTAATCAACAATCATCTGGACATGGTAC
TAGCAGACACTGGCGCAGGAATATCGGTGTGCAGCCTAGATACAGCCAAG
AAATGGAACATTGCAGAGAGG Run BLAST on NCBI protein sequence of TCONS_00020815-protein >TCONS_00020815-protein ID=TCONS_00020815-protein|Name=TCONS_00020815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
KARKEATWTQFKEAMHAYYKPTENLTLKHFQFRSLHQVKDEAFIAFCNRV
EKESNHCQFQCENANCTGATTAVRDQIIIGTLNGEIREEALKNSWDLNSL
RREGMRLESAVHGASEIAGEGSINRLYGKYSRKNPHNPKTPSQAPNKNKP
TACFFCGITGKRQDIITHARACPAKTSICSKCDKMGHYSKVCKSKHNEKN
AVNEMQESEPAEDENTSVYNVNLFKITHLKGNNEDFRTEVLINNHLDMVL
ADTGAGISVCSLDTAKKWNIAER Run BLAST on NCBI transcript from alignment at sc0000370:95719..96539 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020815 ID=TCONS_00020815|Name=TCONS_00020815|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at sc0000370:95719..96539 (Clytia hemisphaerica)
CCTCTCTGCAATGTTCCATTTCTTGGCTGTATCTAGGCTGCACACCGATA
TTCCTGCGCCAGTGTCTGCTAGTACCATGTCCAGATGATTGTTGATTAGT
ACCTCTGTTCTGAAGTCCTCGTTGTTTCCTTTTAGGTGGGTGATCTTAAA
GAGATTGACATTGTATACTGATGTGTTTTCATCCTCTGCTGGTTCTGATT
CCTGCATTTCGTTCACCGCATTTTTCTCATTGTGCTTGCTTTTGCAGACC
TTTGAATAATGGCCCATTTTATCACATTTGCTACAAATAGATGTCTTTGC
AGGACATGCTCTTGCATGTGTGATGATATCTTGTCTCTTCCCGGTTATTC
CACAGAAGAAACATGctgttggtttgtttttgtttggggCCTGTGATGGT
GTCTTCGGATTATGCGGGTTTTTTCTGGAGTATTTCCCATATAGCCTATT
GATGCTTCCTTCGCCTGCAATTTCCGATGCTCCGTGGACTGCGCTTTCGA
GACGCATTCCTTCTCTTCGGAGTGAGTTTAGATCCCATGAGTTTTTCAGT
GCCTCCTCTCTAATTTCTCCATTCAGTGTACCAATTATGATTTGATCACG
GACTGCGGTTGTTGCACCTGTACAATTTGCATTCTCACATTGGAATTGGC
AATGGTTACTTTCTTTTTCAACGCGATTGCAGAAAGCAATGAAGGCTTCA
TCCTTAACTTGGTGTAAGGACCGGAATTGAAAATGCTTGAGGGTCAGGTT
TTCTGTTGGTTTGTAATAGGCATGCATAGCTTCTTTAAATTGTGTCCATG
TGGCTTCCTTTCTTGCCTTTT Coding sequence (CDS) from alignment at sc0000370:95719..96539 >TCONS_00020815 ID=TCONS_00020815|Name=TCONS_00020815|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0000370:95719..96539 (Clytia hemisphaerica)
CCTCTCTGCAATGTTCCATTTCTTGGCTGTATCTAGGCTGCACACCGATA
TTCCTGCGCCAGTGTCTGCTAGTACCATGTCCAGATGATTGTTGATTAGT
ACCTCTGTTCTGAAGTCCTCGTTGTTTCCTTTTAGGTGGGTGATCTTAAA
GAGATTGACATTGTATACTGATGTGTTTTCATCCTCTGCTGGTTCTGATT
CCTGCATTTCGTTCACCGCATTTTTCTCATTGTGCTTGCTTTTGCAGACC
TTTGAATAATGGCCCATTTTATCACATTTGCTACAAATAGATGTCTTTGC
AGGACATGCTCTTGCATGTGTGATGATATCTTGTCTCTTCCCGGTTATTC
CACAGAAGAAACATGctgttggtttgtttttgtttggggCCTGTGATGGT
GTCTTCGGATTATGCGGGTTTTTTCTGGAGTATTTCCCATATAGCCTATT
GATGCTTCCTTCGCCTGCAATTTCCGATGCTCCGTGGACTGCGCTTTCGA
GACGCATTCCTTCTCTTCGGAGTGAGTTTAGATCCCATGAGTTTTTCAGT
GCCTCCTCTCTAATTTCTCCATTCAGTGTACCAATTATGATTTGATCACG
GACTGCGGTTGTTGCACCTGTACAATTTGCATTCTCACATTGGAATTGGC
AATGGTTACTTTCTTTTTCAACGCGATTGCAGAAAGCAATGAAGGCTTCA
TCCTTAACTTGGTGTAAGGACCGGAATTGAAAATGCTTGAGGGTCAGGTT
TTCTGTTGGTTTGTAATAGGCATGCATAGCTTCTTTAAATTGTGTCCATG
TGGCTTCCTTTCTTGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020815-exon-sc0000370-1491911889:95719..96539 | TCONS_00020815-exon-sc0000370-1491911889:95719..96539 | Clytia hemisphaerica | exon |
| TCONS_00020815-exon-sc0000370-1510915933:95719..96539 | TCONS_00020815-exon-sc0000370-1510915933:95719..96539 | Clytia hemisphaerica | exon |
| TCONS_00020815-exon-sc0000370-1575043694:95719..96539 | TCONS_00020815-exon-sc0000370-1575043694:95719..96539 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000370 | supercontig | sc0000370:95719..96539 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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