TCONS_00020822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020822
Unique NameTCONS_00020822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020822 ID=TCONS_00020822|Name=TCONS_00020822|organism=Clytia hemisphaerica|type=transcript|length=1431bp
aaaaatctcTCTAGAGGGTAGCACAAGacaatttgcaattttttgaaacG
TGTATAAATAGGCCTGGTCGTTGTATCAGTCACAAGCAAAATAATTCTGT
CAAGAAAACCTTCATTTCAATTTCTCAAAGCTTTCGAGTCTTAACCAACC
AAACTATACAAAATGGCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAA
TGGATCTGGTATGTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAG
CTGTCTTCCCCTCCATTGTTGGACGTCCCCGTCACCAAGGTGTCATGGTT
GGTATGGGACAAAAAGACTCCTATGTCGGTGATGAAGCTCAATCCAAGAG
AGGTATTCTTACCCTGAAATACCCCATCGAACACGGAATCGTCACCAACT
GGGATGATATGGAAAAGATCTGGCATCACACTTTCTACAATGAACTCCGT
GTCGCACCAGAAGAACACCCTGTCCTCCTTACCGAAGCTCCATTGAACCC
AAAGGCTAACAGAGAAAAGATGACCCAAATCATGTTCGAGACCTTCAACT
CCCCAGCTATGTACGTCGCCATCCAAGCTGTCTTATCATTGTACGCCTCT
GGACGTACCACCGGTATTGTCTTGGATTCTGGAGATGGTGTCTCTCACAC
TGTCCCAATCTACGAAGGTTATGCTCTTCCCCACGCCATCATCCGTCTCG
ATTTGGCTGGACGTGATTTGACTGACTACTTGATGAAAATCTTGACCGAA
CGTGGATACTCCTTCACCACCACTGCTGAACGTGAAATCGTCCGTGACAT
CAAAGAGAAATTGTGCTACGTTGCCTTGGACTTTGAACAAGAAATGCAAA
CCGCTGCCTCAAGCTCCAGCTTGGAGAAATCCTACGAATTACCTGATGGA
CAAGTCATCACCATTGGAAACGAACGATTCCGATGCCCAGAAACCCTCTT
CCAACCCGCCTTCATCGGTATGGAATCTGCTGGTATCCACGAAACCACCT
ACAACTCCATCATGAAATGTGACGTCGATATCCGTAAGGACTTGTACGCC
AACACCGTCTTATCCGGAGGAACGACCATGTTCCCAGGTATTGCTGACCG
TATGCAAAAGGAAATCTCCGCCCTCGCTCCACCAACCATGAAAATCAAGA
TCATCGCTCCACCAGAAAGGAAATACTCCGTCTGGATCGGAGGATCCATC
TTGGCTTCACTCTCCACCTTCCAACAGATGTGGATCTCCAAACAAGAATA
CGATGAATCTGGTCCATCCATCGTCCACAGAAAATGCTTCTAAATTAtta
caattttccaatttcgaACGACGCCACAATTTGTAACATACACAATCCAT
ATTTTGTATATAGAATTAAgattaaaaataacaaattaccaaaaaaaagc
tttaaatacTTATGGTCTCTCTTTATCTCAC
Run BLAST on NCBI

protein sequence of TCONS_00020822-protein

>TCONS_00020822-protein ID=TCONS_00020822-protein|Name=TCONS_00020822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MAEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVIT
IGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVL
SGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF
Run BLAST on NCBI

transcript from alignment at sc0000371:18508..20556+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020822 ID=TCONS_00020822|Name=TCONS_00020822|organism=Clytia hemisphaerica|type=transcript|length=2049bp|location=Sequence derived from alignment at sc0000371:18508..20556+ (Clytia hemisphaerica)
aaaaatctcTCTAGAGGGTAGCACAAGacaatttgcaattttttgaaacG
TGTATAAATAGGCCTGGTCGTTGTATCAGTCACAAGCAAAATAATTCTGT
CAAGAAAACCTTCATTTCAATTTCTCAAAGGTAAGAGCTGTTTGCTGGGC
CAAAAACTATTCTAAAAACATTTCTCAAAacgtcaatatttttgtcagaa
aatcaTTAATTTTAGTGTGTTTGGATGACTCTTTATGTGTGCTTATGTCT
CTATCTATGATTTGACATGATTAATTCTTTTTGATACGTCAtatcaaata
aaagagaaagcTAGCACTCCTCTTTCTCATCTagttattgtttttatgac
cTTATTAGGAGATTTTGCATGAAATCTATTCAAACTTCCTGAATGGTTGA
TAACAGAGTATATAAAAGAGGGCAGGAGTTTTCTAGAACCACATTCAACA
CATACAAGTGTCGATAACAAACTTCTCTAGacaactttttttcttaaagC
TTTCGAGTCTTAACCAACCAAACTATACAAAATGGCTGAAGATGATGTTG
CCGCTCTCGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCT
GGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCCCG
TCACCAAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGTG
ATGAAGCTCAATCCAAGAGAGGTATTCTTACCCTGAAATACCCCATCGAA
CACGGAATCGTCACCAACTGGGATGATATGGAAAAGGTGagttgcttttt
taaaaaacaaataaaaatcaagtttgaaaataaGCTGGACATAAAATACT
TTAGTTTGAAAAACAATCTTTAGAAATGGGCGTTGCCCGAACTGCCTTGG
ATGTTTTGAATTAAGCCTTTTAGAGGACATTAACTGAAAACAATTATCAC
ATGAATAAAGCTTTAAGACTTACATTTGAAAAAATGGGCGTTGGCTTTTC
ATCTTTGACTAAACTATAACTTATTTTCTCTACAGATCTGGCATCACACT
TTCTACAATGAACTCCGTGTCGCACCAGAAGAACACCCTGTCCTCCTTAC
CGAAGCTCCATTGAACCCAAAGGCTAACAGAGAAAAGATGACCCAAATCA
TGTTCGAGACCTTCAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGTC
TTATCATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGGATTCTGG
AGATGGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCCC
ACGCCATCATCCGTCTCGATTTGGCTGGACGTGATTTGACTGACTACTTG
ATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAACG
TGAAATCGTCCGTGACATCAAAGAGAAATTGTGCTACGTTGCCTTGGACT
TTGAACAAGAAATGCAAACCGCTGCCTCAAGCTCCAGCTTGGAGAAATCC
TACGAATTACCTGATGGACAAGTCATCACCATTGGAAACGAACGATTCCG
ATGCCCAGAAACCCTCTTCCAACCCGCCTTCATCGGTATGGAATCTGCTG
GTATCCACGAAACCACCTACAACTCCATCATGAAATGTGACGTCGATATC
CGTAAGGACTTGTACGCCAACACCGTCTTATCCGGAGGAACGACCATGTT
CCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCAC
CAACCATGAAAATCAAGATCATCGCTCCACCAGAAAGGAAATACTCCGTC
TGGATCGGAGGATCCATCTTGGCTTCACTCTCCACCTTCCAACAGATGTG
GATCTCCAAACAAGAATACGATGAATCTGGTCCATCCATCGTCCACAGAA
AATGCTTCTAAATTAttacaattttccaatttcgaACGACGCCACAATTT
GTAACATACACAATCCATATTTTGTATATAGAATTAAgattaaaaataac
aaattaccaaaaaaaagctttaaatacTTATGGTCTCTCTTTATCTCAC

Coding sequence (CDS) from alignment at sc0000371:18508..20556+

>TCONS_00020822 ID=TCONS_00020822|Name=TCONS_00020822|organism=Clytia hemisphaerica|type=CDS|length=2262bp|location=Sequence derived from alignment at sc0000371:18508..20556+ (Clytia hemisphaerica)
ATGGCTGAAGATGATGTTGCCGCTCTCGTCGTAGACAATGGATCTGGTAT
GTGCAAAGCTGGATTTGCTGGAGATGATGCTCCAAGAGCTGTCTTCCCCT
CCATTGTTGGACGTCCCCGTCACCAAGGTGTCATGGTTGGTATGGGACAA
AAAGACTCCTATGTCGGTGATGAAGCTCAATCCAAGAGAGGTATTCTTAC
CCTGAAATACCCCATCGAACACGGAATCGTCACCAACTGGGATGATATGG
AAAAGATCTGGCATCACACTTTCTACAATGAACTCCGTGTCGCACCAGAA
GAACACCCTGTCCTCCTTACCGAAGCTCCATTGAACCCAAAGGCTAACAG
AGAAAAGATGACCCAAATCATGTTCGAGACCTTCAACTCCCCAGCTATGT
ACGTCGCCATCCAAGCTGTCTTATCATTGTACGCCTCTGGACGTACCACC
GGTATTGTCTTGGATTCTGGAGATGGTGTCTCTCACACTGTCCCAATCTA
CGAAGGTTATGCTCTTCCCCACGCCATCATCCGTCTCGATTTGGCTGGAC
GTGATTTGACTGACTACTTGATGAAAATCTTGACCGAACGTGGATACTCC
TTCACCACCACTGCTGAACGTGAAATCGTCCGTGACATCAAAGAGAAATT
GTGCTACGTTGCCTTGGACTTTGAACAAGAAATGCAAACCGCTGCCTCAA
GCTCCAGCTTGGAGAAATCCTACGAATTACCTGATGGACAAGTCATCACC
ATTGGAAACGAACGATTCCGATGCCCAGAAACCCTCTTCCAACCCGCCTT
CATCGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCA
TGAAATGTGACGTCGATATCCGTAAGGACTTGTACGCCAACACCGTCTTA
TCCGGAGGAACGACCATGTTCCCAGGTATTGCTGACCGTATGCAAAAGGA
AATCTCCGCCCTCGCTCCACCAACCATGAAAATCAAGATCATCGCTCCAC
CAGAAAGGAAATACTCCGTCTGGATCGGAGGATCCATCTTGGCTTCACTC
TCCACCTTCCAACAGATGTGGATCTCCAAACAAGAATACGATGAATCTGG
TCCATCCATCGTCCACAGAAAATGCTTCTAAATGGCTGAAGATGATGTTG
CCGCTCTCGTCGTAGACAATGGATCTGGTATGTGCAAAGCTGGATTTGCT
GGAGATGATGCTCCAAGAGCTGTCTTCCCCTCCATTGTTGGACGTCCCCG
TCACCAAGGTGTCATGGTTGGTATGGGACAAAAAGACTCCTATGTCGGTG
ATGAAGCTCAATCCAAGAGAGGTATTCTTACCCTGAAATACCCCATCGAA
CACGGAATCGTCACCAACTGGGATGATATGGAAAAGATCTGGCATCACAC
TTTCTACAATGAACTCCGTGTCGCACCAGAAGAACACCCTGTCCTCCTTA
CCGAAGCTCCATTGAACCCAAAGGCTAACAGAGAAAAGATGACCCAAATC
ATGTTCGAGACCTTCAACTCCCCAGCTATGTACGTCGCCATCCAAGCTGT
CTTATCATTGTACGCCTCTGGACGTACCACCGGTATTGTCTTGGATTCTG
GAGATGGTGTCTCTCACACTGTCCCAATCTACGAAGGTTATGCTCTTCCC
CACGCCATCATCCGTCTCGATTTGGCTGGACGTGATTTGACTGACTACTT
GATGAAAATCTTGACCGAACGTGGATACTCCTTCACCACCACTGCTGAAC
GTGAAATCGTCCGTGACATCAAAGAGAAATTGTGCTACGTTGCCTTGGAC
TTTGAACAAGAAATGCAAACCGCTGCCTCAAGCTCCAGCTTGGAGAAATC
CTACGAATTACCTGATGGACAAGTCATCACCATTGGAAACGAACGATTCC
GATGCCCAGAAACCCTCTTCCAACCCGCCTTCATCGGTATGGAATCTGCT
GGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGACGTCGATAT
CCGTAAGGACTTGTACGCCAACACCGTCTTATCCGGAGGAACGACCATGT
TCCCAGGTATTGCTGACCGTATGCAAAAGGAAATCTCCGCCCTCGCTCCA
CCAACCATGAAAATCAAGATCATCGCTCCACCAGAAAGGAAATACTCCGT
CTGGATCGGAGGATCCATCTTGGCTTCACTCTCCACCTTCCAACAGATGT
GGATCTCCAAACAAGAATACGATGAATCTGGTCCATCCATCGTCCACAGA
AAATGCTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011684XLOC_011684Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020822-proteinTCONS_00020822-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020822-exon-sc0000371-1491911889:18508..18637TCONS_00020822-exon-sc0000371-1491911889:18508..18637Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1510915933:18508..18637TCONS_00020822-exon-sc0000371-1510915933:18508..18637Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1575043694:18508..18637TCONS_00020822-exon-sc0000371-1575043694:18508..18637Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1491911889:19007..19293TCONS_00020822-exon-sc0000371-1491911889:19007..19293Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1510915933:19007..19293TCONS_00020822-exon-sc0000371-1510915933:19007..19293Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1575043694:19007..19293TCONS_00020822-exon-sc0000371-1575043694:19007..19293Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1491911889:19543..20556TCONS_00020822-exon-sc0000371-1491911889:19543..20556Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1510915933:19543..20556TCONS_00020822-exon-sc0000371-1510915933:19543..20556Clytia hemisphaericaexon
TCONS_00020822-exon-sc0000371-1575043694:19543..20556TCONS_00020822-exon-sc0000371-1575043694:19543..20556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000371supercontigsc0000371:18508..20556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4993.35	4884.59	5687.05	5582.03	689.764	585.688	2769.46	2953.43	2705.94	3499.08	2202.75	1813.21	6177.53	6638.45	3498.33	4122.13	5996.71	7297.86	10961.6	7519.46	4102.69	4385.98	3838.89	3813.91	2370.12	2454.42	5836.17	6814.16	6570.44	6945.99
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
IPR020902Actin/actin-like_CS
IPR004001Actin_CS
Blast
[Close]
BLAST of TCONS_00020822 vs. Swiss-Prot (Human)
Match: ACTB (Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1)

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 358/373 (95.98%), Postives = 369/373 (98.93%), Query Frame = 1 
Query:  169 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 1287
            +DD+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAASSSSLEKSYELPDGQVITIGNERFRCPE LFQP+F+GMES GIHETT+NSIMKCDVDIRKDLYANTVLSGGTTM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct:    2 DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKC 374
The following BLAST results are available for this feature:
BLAST of TCONS_00020822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTB0.000e+095.98Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 ... [more]
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