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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020847 ID=TCONS_00020847|Name=TCONS_00020847|organism=Clytia hemisphaerica|type=transcript|length=1937bp
gaattatacaaagttctaaaaaagaagaaataaataaaattcaaaacctc
ACAATCACATTGTTAAGTTCAGTGGTCAAAGCATATGTGTGACATTGGTT
TAGGGTGATATTTTTGGACCAAAAAAACTGAAAGAGAAAACACACGAGTG
CAAAACATAGCTGCTACACTTTCACTACATGCTGGATTGACTAAAGGTAC
ACAACTTAAGGGAAACATTTAAGCAAACTATAAGCAAAACACTTTACAGA
AACGCACaacaaaacttaaaaatcataaaatcgtCATGTTGTGAATTTTA
AAGACCGGAATCGCGACGCAGTCACTAACTCATAGACAATTCATATTGAG
AGCACCATGTCATCGGAGCAGTTCTTATCACCAGAGATGATGAGTCATCA
GGATCCTTTACCAACTGATCTAAACGAGACAAACGAGACACTCCATCAAC
TAACCTTTATCACCAGATACGAAAATATACATTGCACTCTTACTGACGTA
TTAGAATCGTACGTCATTCCGTCAATCGGTGCCGTCATCGTCATTTTTAA
CGTCGTAGTTATTTATTACATGTTGAGATATCGACGTTGCCGACAGCATA
ACCCGATTGCTACCGTATATATGATAAACATGGTTATCGGCGACTTATTT
GTCGGTCTTGTTATCATTCTCGTGAAATCTACCGACTACGCTTTCGAATC
TCGACAACACGAATTCTCATACGACAAATATATGTTATTTAGAGATTGCA
TCATTCGTTTATCGCTTTTCATCTCCGTGTTGAATCTTATACCACTGACT
TTAGATCGTGTATGGGCTGTTAAGTATCCGATTTCACACCGACAGAGTAA
AAAGACGATTGCTATTAAAATTTGTATCGCTGTATGGTTTCTTGCTATTT
TATTTATCGCGATCATGTATTTATTCCATTTTACGAGGAATCTTGATCAC
TTTGCTTTAAACAGACTGATTTTCCCGCTCGCTACTTTCCCGACAACTCT
CGTATTCATCGTTTGCTATATCGTTATTTTTCGGGAACTACGACGAAGTC
GTCAGTACCGAGAACGCTCGGGATCCCGAAGTGCGAACATGATGCATGTA
ACGAGTCAGTTAAGTGTTGAATCAAGATCAAGCAGTATCATCAGTCTCGG
TCAAATTCGTACAACTTGCTGTCAAAACTGTTGTCATATTCATTTTATGT
TGGTTTCCCATAGCAACGTGCGGTATGGCAAACTGTAATTATAAACTCGA
ATCTATATTTATGATACTCGGCTTTGTAAACGCCGCTGTTACGCCGTTAA
TCTATTACACGCATTTACGGCAAGCGTTGGGCCGCCGTATACGAAGATTA
ACGTCTCGACGGCAACCGTCAGCTGCACCGCTAGCGTTGAGTAAATCCGT
TTGTACGGTAATCGGACGAATTGACCGACAAGTGGAGGATACACCGACAA
GCGTACGGAAAGGGAATTGTAGCATTATAGCAGCATCCGAGAATAACAGA
CTGGTTGTTGCTAGATCATATTAACGAATTTTCCGGTCGATATTCGGATG
ACACTATAGAGCAACATAATGGCTGTTGTTTGGTCGTTGTAAGCAAATTC
TATGTTTGGATTGATGGAATGGGTCCCGGTGGAAACAAAATACGAAAGAC
AATTCTCCgataaaattaaattctcaAATTCAAACTGGGCGTTACAGGAG
GGCCTTGCCCTTCATGACCCATGTCGGATATGTTCGTCATCGGTCTTGAA
AAGAttaaataaattgaataaatttttaatttgatatgttattattttta
ttatatttcatttatcaaatgaaattttttaattaatttattgATCGAGG
AAGATATTATTAATGACAATGGAAAAGCGAAAATATTGCTTCAAATAATA
TTGTACTTTTATCGTCAACATGAAacaaatatgagca Run BLAST on NCBI transcript from alignment at sc0000371:93324..95863- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020847 ID=TCONS_00020847|Name=TCONS_00020847|organism=Clytia hemisphaerica|type=transcript|length=2540bp|location=Sequence derived from alignment at sc0000371:93324..95863- (Clytia hemisphaerica)
GAATTATACAAAGTTCTAAAAAAGAAGAAATAAATAAAATTCAAAACCTC
ACAATCACATTGTTAAGTTCAGTGGTCAAAGCATATGTGTGACATTGGTT
TAGGGTGATATTTTTGGACCAAAAAAACTGAAAGAGAAAACACACGAGTG
CAAAACATAGCTGCTACACTTTCACTACATGCTGGATTGACTAAAGGTAC
ACAACTTAAGGGAAACATTTAAGCAAACTATAAGCAAAACACTTTACAGA
AACGCACAACAAAACTTAAAAATCATAAAATCGTCATGTTGTGAATTTTA
AAGACCGGAATCGCGACGCAGTCACTAACTCATAGACAATTCATATTGAG
AGCACCATGTCATCGGAGCAGTTCTTATCACCAGAGATGATGAGTCATCA
GGATCCTTTACCAACTGATCTAAACGAGACAAACGAGACACTCCATCAAC
TAACCTTTATCACCAGATACGAAAATATACATTGCACTCTTACTGACGTA
TTAGAATCGTACGTCATTCCGTCAATCGGTGCCGTCATCGTCATTTTTAA
CGTCGTAGTTATTTATTACATGTTGAGATATCGACGTTGCCGACAGCATA
ACCCGATTGCTACCGTATATATGATAAACATGGTTATCGGCGACTTATTT
GTCGGTCTTGTTATCATTCTCGTGAAATCTACCGACTACGCTTTCGAATC
TCGACAACACGAATTCTCATACGACAAATATATGTTATTTAGAGATTGCA
TCATTCGTTTATCGCTTTTCATCTCCGTGTTGAATCTTATACCACTGACT
TTAGATCGTGTATGGGCTGTTAAGTATCCGATTTCACACCGACAGAGTAA
AAAGACGATTGCTATTAAAATTTGTATCGCTGTATGGTTTCTTGCTATTT
TATTTATCGCGATCATGTATTTATTCCATTTTACGAGGAATCTTGATCAC
TTTGCTTTAAACAGACTGATTTTCCCGCTCGCTACTTTCCCGACAACTCT
CGTATTCATCGTTTGCTATATCGTTATTTTTCGGGAACTACGACGAAGTC
GTCAGTACCGAGAACGCTCGGGATCCCGAAGTGCGAACATGATGCATGTA
ACGAGTCAGTTAAGTGTTGAATCAAGATCAAGCAGTATCATCAGTCTCGG
TAAATTTGATGAAAAGCGAGGAGAGGTACGGAAATCTTTATTACAGTAAA
CCATAGGATAGGAGGAACGAGCAATAGCGTAGACAGGAAGGGCGCAAAAT
TTGTGTAGGAGAGCAGACTTTTATGACACTGATTATCTATTCATAATGTA
AAAACATAATTAGAGTGTCATAAAAATCTGCTCTCCTATACAGATTTTGC
GCCCCACCTGTCTACGCTACTGAATGAGTATACTCTAACCCCTGACCTAA
GTGGCTCGGTTACCTAACAAAATCTACAAGGGGGACTATGAAAATAGTAA
AATTTCATCAGTTTGACTTTGCAAAAAACGTTTACCTCGATCTTCGCCGG
GAGGGGGGATAAATCTCCAGCGTGTTCATTTATCACCCCATCGGGCCTTA
AAATTAGGTCCTTTTGACAACTTTTTTCACCGAGTTATCCACCGGGCTGG
ATATGACCGGGTTACTGACACAAGGGAGAATTCGTATCTCTTCTTTATGT
TACGAAATTAGGTTGCACAGTGGACCTTATCATTTTAGGGTCTTTTATAT
TGGCTGAAAATTTAAAGAAATAATCCAAATTTTCCACCATTTATTTTTTC
AGGTCAAATTCGTACAACTTGCTGTCAAAACTGTTGTCATATTCATTTTA
TGTTGGTTTCCCATAGCAACGTGCGGTATGGCAAACTGTAATTATAAACT
CGAATCTATATTTATGATACTCGGCTTTGTAAACGCCGCTGTTACGCCGT
TAATCTATTACACGCATTTACGGCAAGCGTTGGGCCGCCGTATACGAAGA
TTAACGTCTCGACGGCAACCGTCAGCTGCACCGCTAGCGTTGAGTAAATC
CGTTTGTACGGTAATCGGACGAATTGACCGACAAGTGGAGGATACACCGA
CAAGCGTACGGAAAGGGAATTGTAGCATTATAGCAGCATCCGAGAATAAC
AGACTGGTTGTTGCTAGATCATATTAACGAATTTTCCGGTCGATATTCGG
ATGACACTATAGAGCAACATAATGGCTGTTGTTTGGTCGTTGTAAGCAAA
TTCTATGTTTGGATTGATGGAATGGGTCCCGGTGGAAACAAAATACGAAA
GACAATTCTCCGATAAAATTAAATTCTCAAATTCAAACTGGGCGTTACAG
GAGGGCCTTGCCCTTCATGACCCATGTCGGATATGTTCGTCATCGGTCTT
GAAAAGATTAAATAAATTGAATAAATTTTTAATTTGATATGTTATTATTT
TTATTATATTTCATTTATCAAATGAAATTTTTTAATTAATTTATTGATCG
AGGAAGATATTATTAATGACAATGGAAAAGCGAAAATATTGCTTCAAATA
ATATTGTACTTTTATCGTCAACATGAAACAAATATGAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020847-exon-sc0000371-1575043694:94715..95863 | TCONS_00020847-exon-sc0000371-1575043694:94715..95863 | Clytia hemisphaerica | exon |
| TCONS_00020847-exon-sc0000371-1575043694:93324..94111 | TCONS_00020847-exon-sc0000371-1575043694:93324..94111 | Clytia hemisphaerica | exon |
| TCONS_00020847-exon-sc0000371-1510915933:94715..95863 | TCONS_00020847-exon-sc0000371-1510915933:94715..95863 | Clytia hemisphaerica | exon |
| TCONS_00020847-exon-sc0000371-1510915933:93324..94111 | TCONS_00020847-exon-sc0000371-1510915933:93324..94111 | Clytia hemisphaerica | exon |
| TCONS_00020847-exon-sc0000371-1491911889:94715..95863 | TCONS_00020847-exon-sc0000371-1491911889:94715..95863 | Clytia hemisphaerica | exon |
| TCONS_00020847-exon-sc0000371-1491911889:93324..94111 | TCONS_00020847-exon-sc0000371-1491911889:93324..94111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000371 | supercontig | sc0000371:93324..95863 - |
Blast
The following BLAST results are available for this feature:
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