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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020861 ID=TCONS_00020861|Name=TCONS_00020861|organism=Clytia hemisphaerica|type=transcript|length=370bp
CGTGCTCTGGATGAAGATGTCAGTTGATCAACAATAGAAGGAAATATTGT
GAATCTATCCATCGGAAATGCAGTTTCAAAATGTACGAGACCGAACTTTG
AAGCTGCTTACataaaaaattataatcttTCATCTTGGTCAAAAGATAAG
GAGTTTTGGATTGGCACGTGTTCACGACAACACATTTCAACGTGCAGCAA
GAAATTCACGGCTGATGGTGATCTACTCATCATAAAAATCAATGTGGATG
AAACCAACTCTAAACACTTGTTCGTTCAGAGCATCATTATACAACAGGAA
GGATGTTTTGGGTACATTATGCAAATTAATTCAGTTGTCAATGGTAGCAG
TATAACAGGGTCGGTACCCG Run BLAST on NCBI transcript from alignment at sc0000373:9856..14632+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020861 ID=TCONS_00020861|Name=TCONS_00020861|organism=Clytia hemisphaerica|type=transcript|length=4777bp|location=Sequence derived from alignment at sc0000373:9856..14632+ (Clytia hemisphaerica)
CGTGCTCTGGATGAAGATGTCAGTTGATCAACAATAGAAGGAAATATTGT
GGTAAGAAACTTTTCTACTCTAGcccaaatatttcatttctatcggttca
agaaaatattttcagttacCTAAGCTACCTTTGCCTAAGACGTGTTTCAA
GAGCTATTAGGTAGAAGAAAAATATGTGCAGATAAGGAGACACACCGTCA
GAGCTCATTAGCGTTTTGCgtaaaaaaagtaagaaaacaTCATCAGATAA
CCTACTGTTATACAGATCTGACATCAGCATACTCATTTGACCAAAactat
tgagaaaaaaaatataaacaattaaTTTACAATTAGTAGATATTTTACTA
TCAAGTGGTCAGCTTGAAAAATTGgagatcaattaaagagaaagtcacaa
tgaaaattattttcatattgtAGAATGGTGATAGGGCAAATTCAATTACA
AGAGTGCTTTGACGATGTGAAGACACAAAACAGTAGAGAGATTTTTTTCG
AACAACAAAATTGCGGTGAGGTGGAAGTTGCATATTTTCGACTTTGTTGT
TTCGACTTAGACATCGACTCCACTTTCAGTTTTACATCTGTCAAGAAGAA
ATTTCATGTTATTTCGgatgtttattttgattttcttggttTTTACTTGC
CACGTGGTAAGAGATTGTTTTTATAGCGGTCATTGTTTTCCCGCCACTAA
TGCTTTGCGATAGAGAGAAATGCCCAAAGTTAAGCTGGGGTTAAAATATC
TTGTACTATAATATTGTGTCTGTGGGAAAAAAATCTCACTGTTGTACTTG
TTTCAAAAGGAGAAATTCATTTCTTAGTGTCCTTTATTTTGTAACGTAAG
TCTTCTTGACCAATACACAATACAGTCCACTACCTCGACTAGAGTACTAA
ACGGCAGCGGTGcgaaatttattaaaattcgagtctaaaattttcaatac
aATATTTCATCTACATACACCAATATTCGCACGTTTTTCTCAAAATTGTG
AAGTTTTCATTCACCAGTCATCAAATGATAATGTTCGTTAATGATAGGTG
TGGTCCATTAAGATAATTTAACAAGGCAATAAATAGTTAATCTGTTAAAC
GGTAGGTTTAATCCTGCATATACACTGACTATTGTACTTTCCAGTATTAT
GAACAATTAATGGGACCTTGGACTTGATAAATAGAGTCGAAATCTTGCAA
AACTCGTTAGATTTAGTTATGACCTTCGGATATAGCTTGAACATCGTTCA
TTGTTTTTAACAAACAGTTTTAATTCctctaaaaggaaaaaaatgataAC
CAGTTTATATGGACTACATATGTTTTCCGCTTCCATACGATTGTATACGT
TCGACTAGCAGTAACATGAATTTCTAGAGTCCTTAAGTATTTCGTTTGTA
AAGATTTTCCCACAGTTATACcctacatgtttttcttttataagcataac
gtttataggGGCCTGATAGAGGGGCAGAcacatgcttataaaaaaaacat
gtatgcgGATATACTTGCGCTAGTCGTTTCTTACGGTTTTCATAGGGTTT
TTGTGTATGTTTATACAGGCTTAAGAGCCTAAAAAGACGAATgtaatttt
ttgaatgaaacCTTTCTTGCTTAAACCATCCTATTGATTAAACAAGACCA
CTGTATACGCAATAATCTCGAAGTGGTAATCTTTGAAAATACCGCCCGGG
GTGTAaagattttccccaaaaaggttaagaaaaccCATTTGAACATGCTT
ATAGAAATTGTAGTATAATTGCGTATTGGGAGCAGTTTTATGTTCTACTC
TTCCCGTAAGGTCAGGCAGATTAACTTTCATCTCTCGCAGAGCGGTAACA
GTTAATACCATGTCATGCTTACAAATACAAGCCCGCGTACAAGCCATTCA
CGGGCTAAATTAACTTCATGGTTTTCACCCTGGTCTTAAACCAGTAACTT
TCAAACAGTTCATCTTTTTCATTACGTTAGTTTGCAACTGTATTAATTCG
AAAATTGAATTACATCATGCTGAAAACTAAACAAATACATTTAATTGGTT
GATGGATAGAGGATATTATCCATTTCCATATGCTGAAATTTTCCCATCTA
AGATTACAGGAAATTGTCTTTGAAGTAAATTGGAAATGGTACTCTTGTAA
AAACGTTCTCGAGCTCTCCTCATCTTTTTCTCTTCACTTAAAACGTATAT
TGTAAGCTGGTCTTCTATAGAAGCAATGTTAAACGTACTTAAAACCATAA
CCTAGTAATATAGAACTTTTAGCCTACCGTCTTTTATCTAGTTATGCGGG
ACAAGGGCGTCCTgctagtttttttttaactggACGGGACATGAAGCCTG
TTCGAGGAAAACAGCTTATTTCTGCGCAGTTGaacaaataaaacattttt
gttaTGGGTGGAAGGTATTGGCTATAGGGAAGTATAGCGTTAGTTTGAAC
CGGAAAACATCTTCAGTGTCCTTTTAGGACCGAATATTGTTCCAAATTTA
ATTCGGAGACAGATTATGTGAGACAGATTATGTTCAACCCAATCTGCCTG
CACAATTTTCATCTTTCTGACATAGACTGGACAACCTAAGATCTCTCACC
GATCTAAAGgctgtctcaaaagtatgttgACAGCTTACTTTCCGAGAATT
TTCTCAGAATCTATTTATGATATATTTGAAAgctatataccgttggaaag
atatttccaaagAGAATAATCTGAAggataaaagatttttgaaaaattga
aaaaagaagataaaaaaatttaatatttcttttttactGGTTCAAAAGTC
GTAACATAAGGCTATTTGAGACAGATTTTAGTTCATTAGCGAccttttta
aagttattttcagCAAAGCCACGTCATTAAGTCATTACAATTAAAGTGTA
TGTCATTATATCAATGACTGTTCAAATCATCCTTCAATATCAATACAATG
ATTTCTCGTTAATTAACAAATGTATAATTTGTATCATCCACTGTCCaaga
aatttaaattcttttgtttgcaATGACAACAGGTTTTATGTAACTTAGAG
TTAAGCTTTTAATTCAGAAATTTGGCAAATTAATTGTTACGAGTAATTGT
ACCATATAGTAAACCTAGTCTTGATATCCAAGctttaaatttcgaaaaat
aaaaatttacctcaacatacaaagttctgaAATTACAGCTTGGGAGCTTG
GTCTCCTCATATAGAATGAAAGTGAAACCCCATGCTTTCAAAACTTTCCC
AGCCAACCCAGAGTAGCCGCAGGAATTAAGGGTAGACACAGAAATCAAGG
GCAGAcacagaaataaataaaatgcaATCTAAACATCCAAAAATTACACA
AAAGTTCAACCAACCACGTGGGAATAACTTCTACTGTGGTCGTTTTTTGA
AAGTATCTATCAGTAccaatatttctttttattccatAGAATCTATCCAT
CGGAAATGCAGTTTCAAAATGTACGAGACCGAACTTTGAAGCTGCTTACa
taaaaaattataatcttTCATGTAAGGATCTTATGCATATTTCTACTTTG
AGATTCATCACCAGTGTTTAGGCCCTCAAAAAACTGTTCCAATGTGAAAT
TGGCTTCGAAAGTCCAAATACGTAACTCAATAGCATCTCTTCCCTTTTTA
TTCGCTACTatatcaaaattttcacaatttaaGAGGCTTCTAGGAAGAGT
GTGCAATAGACCTAATGTCTTAATCTTAACCAAGTTGAcacaatttgaat
ttgaaaaagtgtagaaaaatgatttcattttcatatcAGCTTGGTCAAAA
GATAAGGAGTTTTGGATTGGCACGTGTTCACGACAACACATTTCAACGTG
CAGCAAGAAATTCACGGCTGATGGTGATCTACTCATCATAAAAATCAATG
TGGATGAAACCAACTCTAAACACTTGTTCGTTCAGAGCATCATTATACAA
CAGGAAGGTTTGTGCGATTGTCATATCACACGCATACAAGTGATATTTTA
GTGTTTGTGTTTCTATAGCAATCATAAATACTGATAGCCAcattatactt
taatgggataaactttcgcggggattaaattttgcggatttcgttgattt
gggtgtcatccgtgaaaatccgcgaaattaagtcccaatacCTCTTCcat
gaaatatttctaaacaaaactcaaaatatgtcagataaatactatttgaa
tggttacttgcatcaaagaagcgctaaaaatgcgtatttcaacaactaac
atgcatgatttggcagtaaaagccacaaaatcgtgaaaatactGCCACCA
AATAgtgcccaaccgcgaaatttaatccccgcgaaagtttatcccattaa
agtatacgTTACAAATTCCTAGCGTGACTGCATTGTGGGCAAACCCCATC
CACAGTACAGCCTGCTTCCTCTCGCAAGGTTTTCTCCAATTTCTTTCTTC
GTTTTCACGCCTTGTTTAATTCAAACGACGAGGTCTGGGAACTAGTACCC
ATCTATCAGTTCTTGCGCCCACAAATGGGCGGATGACGGGCGTTTTGACA
CCTGTGACACCAAAGCTCTCGATCACTTCTGAACTAGCAATCGAACTTTA
GACCTTCCTTAAGAGTTTGTTTATTAATATCTTTAGGTGTCATACTGACT
GATAACGCGCCATCGAAATATTAGATAATTTGATCAGTTCGATTGTTTCT
TTTTCAAGGATGTTTTGGGTACATTATGCAAATTAATTCAGTTGTCAATG
GTAGCAGTATAACAGGGTCGGTACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020861-exon-sc0000373-1491911889:9856..9906 | TCONS_00020861-exon-sc0000373-1491911889:9856..9906 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1510915933:9856..9906 | TCONS_00020861-exon-sc0000373-1510915933:9856..9906 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1575043694:9856..9906 | TCONS_00020861-exon-sc0000373-1575043694:9856..9906 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1491911889:13295..13376 | TCONS_00020861-exon-sc0000373-1491911889:13295..13376 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1510915933:13295..13376 | TCONS_00020861-exon-sc0000373-1510915933:13295..13376 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1575043694:13295..13376 | TCONS_00020861-exon-sc0000373-1575043694:13295..13376 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1491911889:13645..13812 | TCONS_00020861-exon-sc0000373-1491911889:13645..13812 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1510915933:13645..13812 | TCONS_00020861-exon-sc0000373-1510915933:13645..13812 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1575043694:13645..13812 | TCONS_00020861-exon-sc0000373-1575043694:13645..13812 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1491911889:14564..14632 | TCONS_00020861-exon-sc0000373-1491911889:14564..14632 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1510915933:14564..14632 | TCONS_00020861-exon-sc0000373-1510915933:14564..14632 | Clytia hemisphaerica | exon |
| TCONS_00020861-exon-sc0000373-1575043694:14564..14632 | TCONS_00020861-exon-sc0000373-1575043694:14564..14632 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:9856..14632 + |
Blast
The following BLAST results are available for this feature:
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