TCONS_00020868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020868
Unique NameTCONS_00020868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020868 ID=TCONS_00020868|Name=TCONS_00020868|organism=Clytia hemisphaerica|type=transcript|length=863bp
ttcagtgaaaaatgaaattataacaaaattatgaaataaaaaatggatac
aatttgaacaaaaaataacagaCAACACGCATGCCCCAAAATGGTGGATG
AGGAAGCTACAGAGACATTGGCTCAACGCCATAAACGTGAACAAAAAGAA
TTGCAAGGAAAGATACAAGCACTGAAGCACGGCATACCTAAAGGTGACAA
GAAACGTAAGAAGCAAGTCACAATTGAAATCGCCCAACTTCAAGCAGAAC
TGGatcaaaaacaacaagaaaagaTCGATGACGAGAAAAGCACAACTGTG
AACGGAGAAGATAACACATCATTTAATGAAGCAGTAGAAGACAAACTGAC
CATACAAGAAAATGGTGAGGCAGATCTGACGGAAGGCCGAACACAGCAAA
GCGGAAAGAAAACTTCCAAAGCTCAGAAGAGAAGGGAGAAGAAAGAACAA
GAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAAGCGC
TAATCATGTTCGCAATTTGGAAGCTGCTCAATtcgacaaaattttgaaag
aaaatcttCTTAAGATTCGTGAGGTTAGTAGCATGTAACTTCCCTGCAAG
TCAGATGGTAGATATCGATTTGCTAACCAATCAAATACCGTCATTTTGTA
CTTTAACGAATTCATCCAATGAAATCATCGAACGGACCAAGGGTTAAACA
AGACAAATGTCTCGAATGTTTGAGAATATAACTACTCAGCAAtcgttact
acaagacagttttctctttttgttttcatcgaccgccggaggcggtttct
ttcatagtggtacgctaatctcgttttgccttggctcattactttgtcta
ccatttactttcg
Run BLAST on NCBI

protein sequence of TCONS_00020868-protein

>TCONS_00020868-protein ID=TCONS_00020868-protein|Name=TCONS_00020868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MVDEEATETLAQRHKREQKELQGKIQALKHGIPKGDKKRKKQVTIEIAQL
QAELDQKQQEKIDDEKSTTVNGEDNTSFNEAVEDKLTIQENGEADLTEGR
TQQSGKKTSKAQKRREKKEQEERERQKRLVEGEKESANHVRNLEAAQFDK
ILKENLLKIREVSSM
Run BLAST on NCBI

transcript from alignment at sc0000373:41882..43869+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020868 ID=TCONS_00020868|Name=TCONS_00020868|organism=Clytia hemisphaerica|type=transcript|length=1988bp|location=Sequence derived from alignment at sc0000373:41882..43869+ (Clytia hemisphaerica)
ttcagtgaaaaatgaaattataacaaaattatgaaataaaaaatggatac
aatttgaacaaaaaataacagaCAACACGCATGCCCCAAAATGGTGGATG
AGGAAGCTACAGAGACATTGGCTCAACGCCATAAACGTGAACAAAAAGAA
TTGCAAGgtttttgttaaatttcttttttatatcgATGCTTTTATTTGTG
TGTAGTACAAGTTTTGGGTTTACCATCGGCGGATTTATGGATTTCTCTAA
ACAAAGTGGCTTTATGCGaatcttttttctcattttacaTTTAGCCCTAA
AAGGCAGTCACAAAGTTGTAGTGTGTGCCATATAAAACAAGCGTGGGACC
TTTGGCGACGAATGCCGACTGGGCTATACGTCCCGTGTCTGAGCTTGGTT
GACTAAGAGTAACTCTAAATGAGGTCTTTCGATATTCTCGAGGGTTCTTC
GGGGTTAAAACAAAATTATGGGTCTTTTTAACCGTCCTACGTCTAGACAA
AACAAAACTGCCCAAACCGTCTTCTTCCTAAAAGTGACACTATAATAATG
ATATTGCTAAATCTCTACAACTTTTCCAGGAAAGATACAAGCACTGAAGC
ACGGCATACCTAAAGGTGACAAGAAACGTAAGAAGCAAGTCACAATTGAA
ATCGCCCAACTTCAAGCAGAACTGGatcaaaaacaacaagaaaagaTCGA
TGACGAGGTATGTAAACAAGGAAGAGATTAGCTCCAAATTATTTGCTCTC
GCTCATTGCAAGAGCAAACACTTATCAGTTACCAATCTAAGCTTTATTAT
AGTTATGAAAGCATAGTAAAATTCAGGCCATTTGGTGGCTACAGTAATGG
GTACCCCCATATTTTGATGGTCCAAATTCGCCTTTCTCTTTGGTTTTTCA
GAAAGCATCCGATTaatgttggcaaaatataaatttatgaCGGGTGGTGG
ACTGCTGAATTCTTTCAAGACTAATCCCAATAATTTCTTCGGGGCTACCA
CCTGAGAACCCCTGATATCGCTTTACTTATTACGCTGTTTAATACATAAC
TTGATCGTATATTCAATGGTCTCTGGTGAATTTGAATTACATTATTTTAC
TCACCGTTCCATAGAAAAGCACAACTGTGAACGGAGAAGATAACACATCA
TTTAATGAAGCAGTAGAAGACAAACTGACCATACAAGAAAATGGTGAGGC
AGATCTGACGGAAGGCCGAACACAGCAAAGCGGAAAGAAAACTTCCAAAG
CTCAGAAGAGAAGGGTAAGTCGTTTGTTCGTGATGCTGTTTGGTGCTTTG
GTtgaaactttatattttgttttaccTGTTTAGTGGTTTGATTCTTTCAA
CCAccagtgttaaaagttttttcgtCTCTgacgaaaaaccttgctttgac
tGCAGTTGCCAGTATCCTAGCGTCGCTAATCGTACTAAAAATGTGGTGCA
AATCGTTCGATTGGTGCTTGGTCATGGCCTTCAGAAATGTTACCGGGATA
AACCACAACCTATAGTATTGATAGGAGTATGTGATTTCACTTCTTATCCC
TCATTCTTAGGAGAAGAAAGAACAAGAAGAGCGAGAGCGCCAGAAGCGTT
TAGTGGAAGGTGAAAAAGAAAGCGCTAATCATGTTCGCAATTTGGAAGCT
GCTCAATtcgacaaaattttgaaagaaaatcttCTTAAGATTCGTGAGGT
TAGTAGCATGTAACTTCCCTGCAAGTCAGATGGTAGATATCGATTTGCTA
ACCAATCAAATACCGTCATTTTGTACTTTAACGAATTCATCCAATGAAAT
CATCGAACGGACCAAGGGTTAAACAAGACAAATGTCTCGAATGTTTGAGA
ATATAACTACTCAGCAAtcgttactacaagacagttttctctttttgttt
tcatcgaccgccggaggcggtttctttcatagtggtacgctaatctcgtt
ttgccttggctcattactttgtctaccatttactttcg

Coding sequence (CDS) from alignment at sc0000373:41882..43869+

>TCONS_00020868 ID=TCONS_00020868|Name=TCONS_00020868|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at sc0000373:41882..43869+ (Clytia hemisphaerica)
ATGGTGGATGAGGAAGCTACAGAGACATTGGCTCAACGCCATAAACGTGA
ACAAAAAGAATTGCAAGGAAAGATACAAGCACTGAAGCACGGCATACCTA
AAGGTGACAAGAAACGTAAGAAGCAAGTCACAATTGAAATCGCCCAACTT
CAAGCAGAACTGGatcaaaaacaacaagaaaagaTCGATGACGAGAAAAG
CACAACTGTGAACGGAGAAGATAACACATCATTTAATGAAGCAGTAGAAG
ACAAACTGACCATACAAGAAAATGGTGAGGCAGATCTGACGGAAGGCCGA
ACACAGCAAAGCGGAAAGAAAACTTCCAAAGCTCAGAAGAGAAGGGAGAA
GAAAGAACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAA
AAGAAAGCGCTAATCATGTTCGCAATTTGGAAGCTGCTCAATtcgacaaa
attttgaaagaaaatcttCTTAAGATTCGTGAGGTTAGTAGCATGTAAAT
GGTGGATGAGGAAGCTACAGAGACATTGGCTCAACGCCATAAACGTGAAC
AAAAAGAATTGCAAGGAAAGATACAAGCACTGAAGCACGGCATACCTAAA
GGTGACAAGAAACGTAAGAAGCAAGTCACAATTGAAATCGCCCAACTTCA
AGCAGAACTGGatcaaaaacaacaagaaaagaTCGATGACGAGAAAAGCA
CAACTGTGAACGGAGAAGATAACACATCATTTAATGAAGCAGTAGAAGAC
AAACTGACCATACAAGAAAATGGTGAGGCAGATCTGACGGAAGGCCGAAC
ACAGCAAAGCGGAAAGAAAACTTCCAAAGCTCAGAAGAGAAGGGAGAAGA
AAGAACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAA
GAAAGCGCTAATCATGTTCGCAATTTGGAAGCTGCTCAATtcgacaaaat
tttgaaagaaaatcttCTTAAGATTCGTGAGGTTAGTAGCATGTAAATGG
TGGATGAGGAAGCTACAGAGACATTGGCTCAACGCCATAAACGTGAACAA
AAAGAATTGCAAGGAAAGATACAAGCACTGAAGCACGGCATACCTAAAGG
TGACAAGAAACGTAAGAAGCAAGTCACAATTGAAATCGCCCAACTTCAAG
CAGAACTGGatcaaaaacaacaagaaaagaTCGATGACGAGAAAAGCACA
ACTGTGAACGGAGAAGATAACACATCATTTAATGAAGCAGTAGAAGACAA
ACTGACCATACAAGAAAATGGTGAGGCAGATCTGACGGAAGGCCGAACAC
AGCAAAGCGGAAAGAAAACTTCCAAAGCTCAGAAGAGAAGGGAGAAGAAA
GAACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGA
AAGCGCTAATCATGTTCGCAATTTGGAAGCTGCTCAATtcgacaaaattt
tgaaagaaaatcttCTTAAGATTCGTGAGGTTAGTAGCATGTAAATGGTG
GATGAGGAAGCTACAGAGACATTGGCTCAACGCCATAAACGTGAACAAAA
AGAATTGCAAGGAAAGATACAAGCACTGAAGCACGGCATACCTAAAGGTG
ACAAGAAACGTAAGAAGCAAGTCACAATTGAAATCGCCCAACTTCAAGCA
GAACTGGatcaaaaacaacaagaaaagaTCGATGACGAGAAAAGCACAAC
TGTGAACGGAGAAGATAACACATCATTTAATGAAGCAGTAGAAGACAAAC
TGACCATACAAGAAAATGGTGAGGCAGATCTGACGGAAGGCCGAACACAG
CAAAGCGGAAAGAAAACTTCCAAAGCTCAGAAGAGAAGGGAGAAGAAAGA
ACAAGAAGAGCGAGAGCGCCAGAAGCGTTTAGTGGAAGGTGAAAAAGAAA
GCGCTAATCATGTTCGCAATTTGGAAGCTGCTCAATtcgacaaaattttg
aaagaaaatcttCTTAAGATTCGTGAGGTTAGTAGCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011703XLOC_011703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020868-exon-sc0000373-1491911889:41882..42038TCONS_00020868-exon-sc0000373-1491911889:41882..42038Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1510915933:41882..42038TCONS_00020868-exon-sc0000373-1510915933:41882..42038Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1575043694:41882..42038TCONS_00020868-exon-sc0000373-1575043694:41882..42038Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1491911889:42461..42588TCONS_00020868-exon-sc0000373-1491911889:42461..42588Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1510915933:42461..42588TCONS_00020868-exon-sc0000373-1510915933:42461..42588Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1575043694:42461..42588TCONS_00020868-exon-sc0000373-1575043694:42461..42588Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1491911889:42996..43145TCONS_00020868-exon-sc0000373-1491911889:42996..43145Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1510915933:42996..43145TCONS_00020868-exon-sc0000373-1510915933:42996..43145Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1575043694:42996..43145TCONS_00020868-exon-sc0000373-1575043694:42996..43145Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1491911889:43442..43869TCONS_00020868-exon-sc0000373-1491911889:43442..43869Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1510915933:43442..43869TCONS_00020868-exon-sc0000373-1510915933:43442..43869Clytia hemisphaericaexon
TCONS_00020868-exon-sc0000373-1575043694:43442..43869TCONS_00020868-exon-sc0000373-1575043694:43442..43869Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020868-proteinTCONS_00020868-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:41882..43869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.3946	14.1883	14.2812	12.2196	8.99216	7.82461	11.7487	11.7347	13.3451	10.6524	6.30228	7.02824	5.22168	4.43656	7.25918	7.90197	15.8648	14.6076	10.1853	13.9901	8.5081	8.58034	9.68085	8.05758	2.78303	3.48375	6.3178	3.41761	5.34891	7.87991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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