TCONS_00020871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020871
Unique NameTCONS_00020871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020871 ID=TCONS_00020871|Name=TCONS_00020871|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CCAACACGAAAACCGGTGACATGCTTAGCACAGAGGAGTATGGGAAGTAC
TGTGATGACATAGAGAATACTACCACGTGGGGTGGTCAACTAGAGATTCG
TGCGATATCGAACGTGTATCAACAAAGAGTGGAGATTTATCAAGACAACG
CTCCCAGGCTAGTGATCGGTGAAGAACATGTAGCCTCTACTCCTCTTCGA
TTATCTTCACTTTCATTGCGTGGCTGTCTCACTGAATGTATGTACCATCT
TGGATGTCTATCCGTTAATTACATGAGAGAGGATTCTACTTGTGAAATCT
TGGGGAACACCATCCAAAGAAACATTGAAGAACACGTGACCGTCTTAACC
AATCAGACGGGTTGGAATCATTTCGAAACAAATTATGACCGAAAAGCTaT
TGGGATCACTTGTTCCCGAAGTAATCCATGCCCATCGGATAAACGTTGTG
TTGATAATTGTGATGGCTTGGCTTCTTGCGTCCCTCTTACAGTCGAAGCG
TTGCACAGTCACGTCCAAACCGCAACTAGTTCATCATTTTCGGATACCGC
CAGAGGCCCGGCATCTGCTTTCGACGGAAATGAAGGAACTATGTTCCATA
CCGCCCACCTCATGACAGGACACTGGGTTAAGGCGGAATTCAACAATCGT
GTGTTTATCGACTATGTTGTGTTTGTGAATCGTAACAGCTACCCTACTCT
CTCATACCGAAGTGATCTAATTGATCTGAAGACCATCCTAACCGTCAACG
GGCAGACGACCATGACATGGTTTGCGAATACAGGGGACATGGGGGAACGC
AGAATCTTTTCATGTATGAGACAGGCTGATGGAATTTACGCTGAGCAACC
ACAAGTGGTCGGTCACAACGCGTTAAACTTCCAAGAAATTTGGATTTATG
GCGCAGTTTTGTGATTCcgtttgatttgatttgttttattacttttattt
ttcaagcgagaaaattttttagaaaagtaaaacttcaaataatTCAAAGC
GTCAGCCTAGgcttaggtcccaggcaaaaaattAGGCCCCCCTAAagatt
catgaaatttttgataGCCCCCAAGGCTTTCGACCTTCGacacttttaaa
aatttgtttcacGAAAGAAGGTTAAAACAATGTAAATTGTGTTTGCCTCA
CCAAAAATAAGTCTTATTAATAATTTAAGTTTCATTCAACAATATTAGGA
GAAATTTTGGATATTGTCGCAATTAGGCCTTACGTAAAAGTGTCGTCATT
TGAACAATATTCACTTTGGTTTTAAA
Run BLAST on NCBI

transcript from alignment at sc0000373:46248..53027+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020871 ID=TCONS_00020871|Name=TCONS_00020871|organism=Clytia hemisphaerica|type=transcript|length=6780bp|location=Sequence derived from alignment at sc0000373:46248..53027+ (Clytia hemisphaerica)
CCAACACGAAAACCGGTGACATGCTTAGCACAGGTGAGTTTTCAATGGTT
GTTGACTGttagaaagttttttgaaattactTACCTATCAAAGGTTCCAA
taccaataaaatattttgaagaatcaaactggttcttatttttatattta
aagcttttaaaaagGAAACGGTGAAAATCACGATTAAAAGCTTTCGCAAC
GCTCTCTTTTCGGTACTTCTAAAATAGAGTGCACCACCAGAAACGACAGC
CGATTTCAAACCACTATAAATCTTTTTcgacattttgaataattttgttt
ttgttacaGAGGAGTATGGGAAGTACTGTGATGACATAGAGAATACTACC
ACGTGGGGTGGTCAACTAGAGGTATGTTATTTCATTGTAAAGCTCATacc
gaggggggggggctactcGATTTCGAAATGACGGTATGTGCCGcacaaaa
tctgcttttcaaaatcgtacccttacagtgcagttcaatatggctgaaca
GGTACCCTTTCATTGCATTTTCTCATGATTTaaccaacccttatagtgca
ctatatttttcagctgtaaatctgcgtgaaaaaagaagcttgggaaattt
tctatttcaaagaaaaactgagaaaattatttttgtcagctgtaattgtc
agacaatagaaactttttcaaacaaacgagaagtaaaaacctttctttat
atcagttattttgaatttgttttaagaTTCGACTCATTCAGTGctatctc
acagaaacacacccttacagtgcattttgggatgctggaAAACCCGGCAC
ATGACGTaagccagatcatatgagtgcccccctccCCCTGGGGCTCATAT
ATCTGAGGTTATCTTTTTACTGCTGGCCAGAGTAACTGACATTGCTTCTC
AAAGAATCAATATATTACTTACTAAGCTCGAAAAGGTTTCGAAAAAGAAA
TGTCCTCCTCTTTACAGATTCGTGCGATATCGAACGTGTATCAACAAAGA
GTGGAGATTTATCAAGACAACGCTCCCAGGCTAGTGATCGGTGAAGAACA
TGTAGCCTCTACTCCTCTTCGATTATCGTAAGTTGCCTTTTTGATGTAAA
CTCTGATTTTAATTGTCGCCAAAAACCAAAGGCCCCACACTGATAAAGTT
TATAAAGCCTCTGACATTGCAATTTAATCTTTGACCTAGAAAGCGTTATG
CTTAATATCTGGAATATGCTCAGTCAGAGGCGTAGCCACGGGTTTTCGTT
TCGGGGGGTgagattggaaaatttttgacctttttaggGGAAATTTTTGG
AGAAGATTTTTCTCGTAACTTATGCGCCGCGGGCGTCAATTACTGCTCTA
AGAAATCTCAAGTTGCTTAAAAAAGAGGCATCTGAAGGTAAATGTTAGCG
AGAGTAAGATCACAAAAAGTGCGGAAAACTTAAAATTTCATGTCGCAGAG
AGTTTTCTTTGTAAtcttggcgccgcaggcaaaaagcTAACCAGGCGGAC
CACAGGGAggcttcttttttatttaagatTTGGAATCCTAAAAGTGAACA
TATGCTGGGATTTGTCCACTGTTTTCTATTTATAGTAATAgaaattctgt
tttttttctttggttGTTTCCAATAAGAAGAATGACGTAATCTTAACTTG
TGCAGAATTCTCTCTTTCACCTTTGCAGGCAACTTGAATGAATGCAACTT
GAAATACATAATTTACTATCGCTATTTATAGAAATTTTCGTAGAATTGAC
AGTTAGTGTGACAGATGTCGTttgtttttgtcaataatttatATACCCCT
TACCTGTTGTTATTTCCTGTCCATTTTTAAGTTCCAGAAAACtaatacaa
ttttttaaatcgcaAACATCCTCTTGTGAGTAAAAATAATAACCCACGTG
ATTTtcttttggacccacgaacccacgaacccacgagatattttgaccca
cgaacccacgaacccacgagacaTTCTAACCCACGaacacccacgagggc
acgaacccacgaacccacgaacccacgacacgcacgtaacccacgtaatt
tagcagactctaaTATAGTACCATGAATGACATTTCTATGAATTTTATCG
ATATAGAAAATTTAACTTAACTGGATTAACTGGATTAACTGGATTTATGA
ATTTCGAAGTCACATCAGAAAATGTCGATCAAATTTCAAACACTTTGTCT
TGATAACACGAAGTAGAAGCATTGTGTAAAGATGATATCGATGCAATGGC
TTTTCTCAGTGTTGTTGTTTTGACCTTATCATTATTACTAAAGTTTGCTT
CTACAACGGTGTACTCTATCGAACACTGTCAACAAAGGTGCAACTCTGGC
TGGAGAAAACATCGAATCTTTACTACCCGACGCCGAAGTTGCTTTAGCTG
GATCCATCATTAATTACAGTAAATGGTCTCTCATCGAACGTGAATGGGAA
ATAGAATACGGAGATGTTGATATCCCTGCAGAGACTGTACACCCTGGGTA
CGAGGAAGCTTTTGTTACGGAGAAGGATTCGGCTTTCTTCAAGCTTCATC
ATGGTGTTTCTGGCAAACTGTCATGGGAGGTCAGAACCTTTAATGAATCA
TACATAATTCATTTTATGTATGATATCCCCTATAATTTGGGGTTCAAGGA
GCATAACCAACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCC
GGGAATTTTCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAA
CGTCGGCTTTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGA
TTTATGCGTCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAA
TCAGAGTCTTCNTTTCGCTAAGATGGGTACTGGGCATAAAGCCACCGCCA
AAATCAGATTCCCAGATTCCAAAATCAGTCTTCCCAGCGCGAGAAGAACA
TGCCGCtacgaaaatgaagaaaaaattgcAACATGATTCCTTTGGAAATC
AAGAATATGATAATTTTTTGGAAGACGAAAAAGATTCGTCCAACCGAACG
TCCAGAGCTGCTTATCTCCAATTATATTCATTCTTCATGATTGTTGTTGT
CACCCTCGCATATGTTGGGCTGGTGTAACTTGACGATCTTATCGGATGTT
ATTTCTAACCTGAAgaacctttttttcaaatttagcaGACACAAACTTGA
ACAGTGAAAAATGGCACTTTGAAAAACCTTTGTGACTGATTGAAAACTAG
CCATTACAACAGCATAATGAAAAATATACAGTCAAGCTTGGAAAACAatc
ttaagttttttttaatttctgttATTATGATTTTATTACcaccttttttg
aattttattttccgAAGTATCGCGCACATTTTTTNTTTTTAAGTTTTGTT
TAATTTCTGTTATTATGATTTTATTACcaccttttttgaattttattttc
cgAAGTATCGCGCACATTTTTTTCTATATCAAAGTTTTGTACTTTTTTCT
ACGGTAGTTATTAATGGGAATTGCTGATGATTGGTGATTCTGGTTTTAGA
TGTAATAGACAGACCCTTTATACAACCCTTGAAAGACCCTTCATTCTTGA
ATATAATATGAATATTTTATGAAAACTAGAAACCCTTGAAAATATATTCC
AAGACCCCTCTTAACCATTGACATCCTTGCTATATAGGGCTCTTTGTATA
AAAgttaacattttattttgtgTCTATTTCTGAAAATAAACCTTTATGTT
TGTTTCAAATGTTATTCAAAAAAGATGAAATTGACCATTTTCATTCCACG
TACAAACAACCGattgaatttttataaaagtaaGTTTTACTGAAATATGT
CGCCTGGCAACTAAACTGACTTGAAAGAAATATTGACTGGTTTAGTCCCT
TTTTCATTTAGTATTCAACTccagtatttttcaaaaatttattgattgat
CAAAGTTTCTGTAACTCGTCATTTTCgatgttttttgtaaaagaaaccTC
TTTACAATGAAGTTGGCACTGAAAATTGCGTTTTGTGTTACCATTTTCTG
CCTAAGTTTCACCTTTTCGCATGTTTTCCAATTAAAACAGTGCAATAATT
TTGATGCAGAATTTTCCAAAGTCACTTATGGTCAACGGCTTTTAGGTGAA
ATTCTCTTGACTTTGAGTTCACTTTCATTGCGTGGCTGTCTCACTGAATG
TATGTACCATCTTGGATGTCTATCCGTTAATTACATGAGAGAGGATTCTA
CTTGTGAAATCTTGGGGAACACCATCCAAAGAAACATTGAAGAACACGTG
ACCGTCTTAACCAATCAGACGGGTTGGAATCATTTCGAAACAAATTATGA
CCGAAAAGCTGTAAGTTATCAATATCATTCATTCACTTTTGAACCTTTAG
TGGTCCGAATTTCAAAACTTGAGCTTTCAAAAGCCTCAATTTGAGCTTTC
AAAAGCCTCCATTCGAACGGTGTACTAAAGTCTTTTGTTGGACCTGAATC
GAGGTTTTGCAGTTGACTTTTCGTAGATTAAACATCATTATATAAACTCT
ttattctattttgttttttagaTTGGGATCACTTGTTCCCGAAGTAATCC
ATGCCCATCGGATAAACGTTGTGTTGATAATTGTGATGGCTTGGCTTCTT
GCGTCCCTCTTACAGTCGGTAAGACATCGGAGTATCCAATAAGCGACCAT
TCTGAAAACTAATCTTCCTTCCTTCTCTTCACTATTTAGGCGCCATTGCT
TTNGCCATTCTGAAAACTTCTTCCTGCCTTCTCTTCACTATTTAAGCGCC
ATTGCTTTTTTATCATCTTAAGTGGATTAACTTTTGCGTATACATTTTTC
ACGAATTGAGAATCTAAAGTTTACGCCTGGCCAAAATCTCGTGAATTGGC
TTCTTTTTCACGCAATTTAATTCTATTGGGGTTATCATGGGCCACAATTC
GGATTTTTTATCTCCACTTTCTAGAAAAAGTTAGATGCCTTCAATAGCtc
gtttgaaagatatttttaagtCTTCTCTTTTGCCACTAACTTGATTAACG
GAAGTGTTGCAAATGGTATAAGTTTTAAGTCGATTCACACGATGGCTCGA
GTTATACCACAAGTTATACCTCCTGTCACGAATCCTCCAAATATCATTTG
GtccaaaaatcttttctaaacttttgaaatttgcccACTTTTTCTTTGAT
CATTTTTGAGAACACAAAAATTGTTGTCTGTATTTTAGAAGCGTTGCACA
GTCACGTCCAAACCGCAACTAGTTCATCATTTTCGGATACCGCCAGAGGC
CCGGCATCTGCTTTCGACGGAAATGAAGGAACTATGTTCCATACCGCCCA
CCTCATGACAGGACACTGGGTTAAGGTCCGTTCACATTTTACTTTTGTTC
ACTTCTCTGGATTTTTTAAAACACCTTAAAAGCTGGAAATTATTATTAGA
AGATTTCTGTTGTTTTTATCAATGAGGtgttatcagatagaataaCATCT
TACTTTGGCTGTTTCATCGTCTATTCAGAttcattttgttaaaagtgatt
attggtcgtaaaaatagtttctcaaaatatgaagcGTGGATAAAAATCTA
TTTATAAGGGTATTTTTTCACTGCATTTAGTCTCAGTTCAGAAaggttta
attttgaaaaatgtttggaATTTACAAATCTATTTCAGTTTACAATCTTC
AATTTTCACTTCAAAGACTATAATCTGAATTCCAATCTACATGGAAGGAA
TAactaatttaggtgaaaacttGACAGCTAGATTTCTTTCCTAACAAGTg
cgttttcaaaaagttttcaccaCTGAAGAATCTATGAAAGTAGCTGATTT
CgaatacaaaatttttatttttactgatGGGACATAAATTtccatttgaa
aataattaaattatgttcataattttcgagaattcaaaagaatctaATCA
AGCATGTGAAAATATGTAATTAATATACGATATGAcaacaaagaaatgaa
attattattacaCACGTATACGTAATATTCCTTCGCTTTCCAAAAGTGAA
GAAATTAACAGTTTTGTGGTGAAGAAAACGAGAGAACGCGTTCAAATATT
GTATTCTGtcaattttgttcatttttatcTATTCAGGCGGAATTCAACAA
TCGTGTGTTTATCGACTATGTTGTGTTTGTGAATCGTAACAGCTACCCTA
CTCTCTCATACCGAAGTGATCTAATTGATCTGAAGACCATCCTAACCGTC
AACGGGCAGACGACCATGACATGGTTTGCGAATACAGGGGACATGGGGGA
ACGCAGAATCTTTTCATGTATGAGACAGGCTGATGGAATTTACGCTGAGC
AACCACAAGTGGTCGGTCACAACGCGTTAAACTTCCAAGAAATTTGGATT
TATGGCGCAGTTTTGTGATTCcgtttgatttgatttgttttattactttt
atttttcaagcgagaaaattttttagaaaagtaaaacttcaaataatTCA
AAGCGTCAGCCTAGgcttaggtcccaggcaaaaaattAGGCCCCCCTAAa
gattcatgaaatttttgataGCCCCCAAGGCTTTCGACCTTCGacacttt
taaaaatttgtttcacGAAAGAAGGTTAAAACAATGTAAATTGTGTTTGC
CTCACCAAAAATAAGTCTTATTAATAATTTAAGTTTCATTCAACAATATT
AGGAGAAATTTTGGATATTGTCGCAATTAGGCCTTACGTAAAAGTGTCGT
CATTTGAACAATATTCACTTTGGTTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011704XLOC_011704Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020871-exon-sc0000373-1491911889:46248..46280TCONS_00020871-exon-sc0000373-1491911889:46248..46280Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:46248..46280TCONS_00020871-exon-sc0000373-1510915933:46248..46280Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:46248..46280TCONS_00020871-exon-sc0000373-1575043694:46248..46280Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1491911889:46557..46618TCONS_00020871-exon-sc0000373-1491911889:46557..46618Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:46557..46618TCONS_00020871-exon-sc0000373-1510915933:46557..46618Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:46557..46618TCONS_00020871-exon-sc0000373-1575043694:46557..46618Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1491911889:47215..47324TCONS_00020871-exon-sc0000373-1491911889:47215..47324Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:47215..47324TCONS_00020871-exon-sc0000373-1510915933:47215..47324Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:47215..47324TCONS_00020871-exon-sc0000373-1575043694:47215..47324Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1491911889:50415..50607TCONS_00020871-exon-sc0000373-1491911889:50415..50607Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:50415..50607TCONS_00020871-exon-sc0000373-1510915933:50415..50607Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:50415..50607TCONS_00020871-exon-sc0000373-1575043694:50415..50607Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1491911889:50819..50915TCONS_00020871-exon-sc0000373-1491911889:50819..50915Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:50819..50915TCONS_00020871-exon-sc0000373-1510915933:50819..50915Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:50819..50915TCONS_00020871-exon-sc0000373-1575043694:50819..50915Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1491911889:51486..51622TCONS_00020871-exon-sc0000373-1491911889:51486..51622Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:51486..51622TCONS_00020871-exon-sc0000373-1510915933:51486..51622Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:51486..51622TCONS_00020871-exon-sc0000373-1575043694:51486..51622Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1491911889:52384..53027TCONS_00020871-exon-sc0000373-1491911889:52384..53027Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1510915933:52384..53027TCONS_00020871-exon-sc0000373-1510915933:52384..53027Clytia hemisphaericaexon
TCONS_00020871-exon-sc0000373-1575043694:52384..53027TCONS_00020871-exon-sc0000373-1575043694:52384..53027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:46248..53027 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131825	0.750828	0.855175	0	1.87351	0.899597	1.64311	1.83607	1.17658	1.37535	1.43841	1.7298	4.32408	5.69233	2.1247	1.75012	2.21477	1.91255	10.9328	6.10198	6.31734	5.77305	2.91199	9.03494	6.05968	10.2953	0.868877	0.417978	0	8.66852e-08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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