|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020883 ID=TCONS_00020883|Name=TCONS_00020883|organism=Clytia hemisphaerica|type=transcript|length=525bp
GCTCACAAATCATATTTCGTGACTTGTACAAACAGTGGTTCTGTATGTAG
AAGATGTACCAAAGGATTGATTTTTGACGAGAACATCAAAACATGTGTTC
GTGAAGCCACGCCTACTTCCCAACCACCATCAACAACGATTAAACAAAAT
TTTACTAAAGGAGAAAGCAAAGCAGCTTTATGTAAAGATGAATCTTCAAA
CGGTGCTTTGATTCAGTTGGACGGCTTCAAACGACAATTCTATGTTCAAT
GCAGTTACGGGGTCGCTATCTATCGTCAATGTGCTCCTGGAACTGTTTTC
AGCCGCAAATTGAACACGTGTATCCGTTATACAGTTTCCGCAAACGGCGA
TGAAAATGACGATAAAAATGTCGAAGAAGCATATTGGAAATATGGAGGAA
GAGGTAAATAAAAGCTGATTGAAAGTGAAGTATGATGATGACCTGAGGCT
AGGAATTTTGtaacttttcgattttttgtttataacacAGTAATGTCTTC
TTAACGGTGTATTTCAAAATGGTGT Run BLAST on NCBI protein sequence of TCONS_00020883-protein >TCONS_00020883-protein ID=TCONS_00020883-protein|Name=TCONS_00020883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
AHKSYFVTCTNSGSVCRRCTKGLIFDENIKTCVREATPTSQPPSTTIKQN
FTKGESKAALCKDESSNGALIQLDGFKRQFYVQCSYGVAIYRQCAPGTVF
SRKLNTCIRYTVSANGDENDDKNVEEAYWKYGGRGK Run BLAST on NCBI transcript from alignment at sc0000373:121155..122172+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020883 ID=TCONS_00020883|Name=TCONS_00020883|organism=Clytia hemisphaerica|type=transcript|length=1018bp|location=Sequence derived from alignment at sc0000373:121155..122172+ (Clytia hemisphaerica)
GCTCACAAATCATATTTCGTGACTTGTACAAACAGTGGTTCTGTATGTAG
AAGATGTACCAAAGGATTGATTTTTGACGAGAACATCAAAACATGTGTTC
GTGAAGCCACGCCTACTTCCCAACCACCATCAACAACGATTAAACAAAAT
TGTAAGTGAGGAAATTTCAAGCTTAGGACTTTATGATATTTCAAACAGTC
TCGTCCTCTGACTTATTGCGACACTTTTTCAAGCTAGATAATAGATTGAA
CTTACAAAATCCTTGATGGCGTAATTCTATTATACGAAAAGAAAGATCAT
CAATCAAAATCAAGAGATTTTTCTCCCCCACTTGTCGCACTAAAATCCCC
ACAAAAATATTTGGCAGTAAGTAAACagtgatttttaatttttcactttA
TTCCTTTCCTCCAAGCTTCAATGGTTAAGTCTGCAGCCCTGCTGCTTCTT
CTTAATCATTTAAATTCGGCGGAGTTGGTTTTAGAGAGGGGGGAGTGATT
AAATCTAGTTGGTTTGGAGGCtggtgccaatatattattACAGTGATTCT
AgagttcatttttttttatctcaacGAAAAAGGTCACCAGGCTACCGAGA
TAGGGGTGTTTAtccttcaaattttttctttctaattTCCATAGTTACTA
AAGGAGAAAGCAAAGCAGCTTTATGTAAAGATGAATCTTCAAACGGTGCT
TTGATTCAGTTGGACGGCTTCAAACGACAATTCTATGTTCAATGCAGTTA
CGGGGTCGCTATCTATCGTCAATGTGCTCCTGGAACTGTTTTCAGCCGCA
AATTGAACACGTGTATCCGTTATACAGTTTCCGCAAACGGCGATGAAAAT
GACGATAAAAATGTCGAAGAAGCATATTGGAAATATGGAGGAAGAGGTAA
ATAAAAGCTGATTGAAAGTGAAGTATGATGATGACCTGAGGCTAGGAATT
TTGtaacttttcgattttttgtttataacacAGTAATGTCTTCTTAACGG
TGTATTTCAAAATGGTGT Coding sequence (CDS) from alignment at sc0000373:121155..122172+ >TCONS_00020883 ID=TCONS_00020883|Name=TCONS_00020883|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0000373:121155..122172+ (Clytia hemisphaerica)
GCTCACAAATCATATTTCGTGACTTGTACAAACAGTGGTTCTGTATGTAG
AAGATGTACCAAAGGATTGATTTTTGACGAGAACATCAAAACATGTGTTC
GTGAAGCCACGCCTACTTCCCAACCACCATCAACAACGATTAAACAAAAT
TTTACTAAAGGAGAAAGCAAAGCAGCTTTATGTAAAGATGAATCTTCAAA
CGGTGCTTTGATTCAGTTGGACGGCTTCAAACGACAATTCTATGTTCAAT
GCAGTTACGGGGTCGCTATCTATCGTCAATGTGCTCCTGGAACTGTTTTC
AGCCGCAAATTGAACACGTGTATCCGTTATACAGTTTCCGCAAACGGCGA
TGAAAATGACGATAAAAATGTCGAAGAAGCATATTGGAAATATGGAGGAA
GAGGTAAATAAGCTCACAAATCATATTTCGTGACTTGTACAAACAGTGGT
TCTGTATGTAGAAGATGTACCAAAGGATTGATTTTTGACGAGAACATCAA
AACATGTGTTCGTGAAGCCACGCCTACTTCCCAACCACCATCAACAACGA
TTAAACAAAATTTTACTAAAGGAGAAAGCAAAGCAGCTTTATGTAAAGAT
GAATCTTCAAACGGTGCTTTGATTCAGTTGGACGGCTTCAAACGACAATT
CTATGTTCAATGCAGTTACGGGGTCGCTATCTATCGTCAATGTGCTCCTG
GAACTGTTTTCAGCCGCAAATTGAACACGTGTATCCGTTATACAGTTTCC
GCAAACGGCGATGAAAATGACGATAAAAATGTCGAAGAAGCATATTGGAA
ATATGGAGGAAGAGGTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020883-exon-sc0000373-1491911889:121155..121305 | TCONS_00020883-exon-sc0000373-1491911889:121155..121305 | Clytia hemisphaerica | exon |
| TCONS_00020883-exon-sc0000373-1510915933:121155..121305 | TCONS_00020883-exon-sc0000373-1510915933:121155..121305 | Clytia hemisphaerica | exon |
| TCONS_00020883-exon-sc0000373-1575043694:121155..121305 | TCONS_00020883-exon-sc0000373-1575043694:121155..121305 | Clytia hemisphaerica | exon |
| TCONS_00020883-exon-sc0000373-1491911889:121799..122172 | TCONS_00020883-exon-sc0000373-1491911889:121799..122172 | Clytia hemisphaerica | exon |
| TCONS_00020883-exon-sc0000373-1510915933:121799..122172 | TCONS_00020883-exon-sc0000373-1510915933:121799..122172 | Clytia hemisphaerica | exon |
| TCONS_00020883-exon-sc0000373-1575043694:121799..122172 | TCONS_00020883-exon-sc0000373-1575043694:121799..122172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:121155..122172 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
|
