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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020886 ID=TCONS_00020886|Name=TCONS_00020886|organism=Clytia hemisphaerica|type=transcript|length=736bp
TTTAAACTTCTTAAATTCCTGATAGCATCCCACCCGCTGTGGTAAGGAAA
TTATTAAGTCGCAATTATGTATCCTCTAACGAACTAAAGTAAGACCTAGT
TAtctgatgcttgacatattggaaaatcagtataaataaagctgaaaaat
gtttgaaaaaccaTTCAGCTTTCTCACCaagcaagcaaacaaacaaaaag
tttcttgaagaATCTACAAAGTTTTCAATCATGAAGATCATCATTCTCGC
CGTTCTTGTTGCagTTTGCAGCGCAGCAAAACCTCACCCCCATCAACCCT
GCCCAGACACCTTATGTGTATGGAGATCAGTTGGAGACATCTTCGCATAT
AACGAGCACAAACCATATTATTTTGTGACTTGCACAAACAGTGGTCCAGT
ATGCAGAAGATGTGCTGATGGTTTGGAATTCAACGAGAAAAACAAAGCTT
GTGTTCGTTCATTCAagaaatcaacaacaacaacaacaactaccACAACA
ACTACGACCACTACCCCAACTACAACGACCACCCGAGCCGTCGATGTACC
AGAATGCAACGACTCTTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCC
GATTGGACAACAACAAACCACAATACTATGTTCAATGCAGCAATGGAATC
GCTTCTTGCCGTCAATGTCCACCTCAcatgtatttcaacaacaaatttGA
TGTCTGTGTTCGACGCACTGTACCAAAAGACTGGTA Run BLAST on NCBI protein sequence of TCONS_00020886-protein >TCONS_00020886-protein ID=TCONS_00020886-protein|Name=TCONS_00020886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MKIIILAVLVAVCSAAKPHPHQPCPDTLCVWRSVGDIFAYNEHKPYYFVT
CTNSGPVCRRCADGLEFNEKNKACVRSFKKSTTTTTTTTTTTTTTPTTTT
TRAVDVPECNDSLCKWVPNGSLFRLDNNKPQYYVQCSNGIASCRQCPPHM
YFNNKFDVCVRRTVPKDW Run BLAST on NCBI transcript from alignment at sc0000373:134195..140929+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020886 ID=TCONS_00020886|Name=TCONS_00020886|organism=Clytia hemisphaerica|type=transcript|length=6735bp|location=Sequence derived from alignment at sc0000373:134195..140929+ (Clytia hemisphaerica)
TTTAAACTTCTTAAATTCCTGATAGCATCCCACCCGCTGTGGTAAGGAAA
TTATTAAGTCGCAATTATGTATCCTCTAACGAACTAAAGTAAGACCTAGT
TAtctgatgcttgacatattggaaaatcagtataaataaagctgaaaaat
gtttgaaaaaccaTTCAGCTTTCTCACCaagcaagcaaacaaacaaaaag
tttcttgaagaATCTACAAAGTTTTCAATCATGAAGATCATCATTCTCGC
CGTTCTTGTTGCaggtaaattttaattttatttttgaaaatttatctaTT
TCTATTGtcaattatttattttcaataaaaacgtaaaaattaGCAAAGGC
AAACATAATGGTGATATAGGTATGAAGTCATTTCACCTCCATCAAATCCA
TCTGAATGCTGACATCGATACTTAAAAAGTTTGAAGCTAAAAGTTAAATT
ACTTTTTACGCTCTTTCTTTCAGTTTGCAGCGCAGCAAAACCTCACCCCC
ATCAACCCTGCCCAGACACCTTATGTGTATGGAGATCAGTTGGAGACATC
TTCGCATATAACGAGCACAAACCATATTATTTTGTGACTTGCACAAACAG
TGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGGAATTCAACGAGAAAA
ACAAAGCTTGTGTTCGTTCATTCAagaaatcaacaacaacaacaacaact
accACAACAACTACGACCACTACCCCAACTACAACGACCACCCGAGCCGT
CGATGTACCAGAATGTAAGTATTTATCCagttgaaaaaaatcttttcctt
cCTAATCAGGAAATCTTTTTCTGATGTAAACTGTCATTGCTAGTTTTTTG
TCACTGctgaaattctgaaattgaattATTGTACGTACCAATACACGTGA
CAATCTATACGTCTGTCGGTATTAAAGTTAGTTAAATTCCGGACATTTTA
AGAAGGGAAAAATCTACAGTACCAACCTCCAAAAAAGCGGTAACATTTAC
CATGATTCCTTTTATTTGTTTAGGTAATGACTCTTTGTGCAAATGGGTTC
CAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGTT
CAATGCAGCAATGGAATCGCTTCTTGTCGTCAATGTCCACCTCAcatgta
tttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGACT
GGTAATATATCACCCCAACAAGATGTAGACTGACCTGACCTGATTGAATA
ACAATCGAAAGAGTTATTCATTAACccttattaatttcgcatagcgaaag
tattacgatagtctttctgtgtggcgagaaaattttttgggcgcaaatta
tggcgtgagtgtttggctgcgggcgtactacggccaatattataaaggtg
gactcactcacaaagataaaaaaagcgCTTTTCTTGATAGTTAAAATACT
CTAGTGCAAGACGTGTAACCAAGCCTTAGTAAACATTCATCTTCAtcatg
agaactttttaatggctgcttggctgctgctgtataactttttatcatgt
tttctggtcttttgtagagtatttaaagaggtttattattcgtttactac
taagtattttatgtttgtgtagttagtgaatgcaccaatagttgataatg
ctcagtaagtacaaaaagagttaattttacaTAACAACACATAACCCTCT
TCTTcaaaaaactacaaacagcacaggtatgatatttttttccttttttc
accatgtGTTTAATGTTAACCAATTGTGATGtaagtttgatgacagtttt
ttatctgatgaagtttgattgttgttcgatgagtttggattaagaaaaag
ttccagcttttcctccccgatgccaGCGCCAGGCGATGATGTCAACCTAA
CTCTATCAAACCAATTTTGGTaatcgaaccatcaaatttcatcaaacgAA
ATCCAACAATAGGTGTTAGATTATGGAACCTGATCGAACAGTAATTGAAC
TTTAccagaaaatcttcagtttgatgtttgattatatcgcagttcgatta
agttcgatcagtgtttttggttgtttttgtagctcaaatggttccagTTA
TTGCTAGCGGAACAGCTCAATCGAACACatggttcggtaatcgaacagtt
cgattgacatcgcctggCCGATGGGGTGATAGATATTGGCCTGCTCTTTA
AGGTTTCAGCGTGggtgtctgctaataagccgtcaaagtgtaaaaagaat
gggcaacaaggtaccgtcaactgctctaacttgtgacgattggtcgaaac
atgggactgttgcatatctggtctgtattttcacttgctgtaaaatcgaa
agagaaatcgtgtatttttaaatacgccgttccttaactcaaatcaaatg
actttggaggttcggtgaaatggtggctgtaTTGCCgttccatgttttgt
cagatagtcccaagttagagcagttgacggtaataaatcaaactaattga
gcttcaatcaaacttcgcCGATCTTGATAcccttttgctaatcaggattt
tcattttgaatcattaaaaactctagtggtaccgttgttttgtatgagat
tcccatttccgcactctggaatctttcccctatatcTATTTTAAGGGATA
ACTGGCAAGAGATTGGGGTGGGTTTgttttaatgggatgcagttagAGCA
GTAaaaggagtcattgttgtgatttgcTAGAAGGGCCATTAATCGATTAC
GTATAATATTGATTCTTTTACTGTTTTTAGCATTTACTACTTTCACTGGT
GTGTAAATattcattttatgattttatgaaatatttactGTCAACCTAGA
AATAATTAATATTAAAGGTCTCTATTATAGCATCGGAAAATAattgaaga
ttgaaaataattGCATCACTTTCAGTGAGGTTTAGTCAATTTTTATCTGG
TGGGAAAATTTGAGTGACAGGGGGTGGTAAATAAATCCCCATATTCTATC
TTGATCGAAGTCTGTATCCTTAAGTTACGAGCTtttcttaatatattttt
atatggatTATTGCATTGAGATTTTGGAAAATCTCaaagagtattatttc
tttaaagttggctagtttttaccctgccatTTTCTAGTTCAGAAGCTAGA
GCTCAACTACACAACTGCTTTTTGCCTTTAGTGGCCTCTTGATTGTCCAT
Ggagtcaactgatgcttgtctgaaggttagacctgctgtccggggggtta
gacctgctgtctaTGGGTCCAAAGTCacagggtaaatttccaaaaaatgt
taaaaaaaatgaaaaattttggttttttgaaaaaagaccctccagtgaac
ataaaatattattacgaaaacgtttgaaaatttgttaaaaaaagtctatt
ggtcaaaattgacaatttcattttttgcctgtcgaaggttggagcttgca
agcacattacaggcaaaatttaaaaatatcaatttttgctcatagacttc
ttaaaaaggattttcagactttttcgtaataatattttttgttcactgGA
AGGTATTCTTTCCAAAAAACCAAAAATTTTtgaattttggcaaattctta
tttttcgatgacgtcatcgttttatgacgtcattttgccttatttccttt
atatctcctgatatattcattttcagatataggttcagacctttttcttt
atcagtatttcatgctctttcgaatgaaacaaaaatttttcaattttgac
gatcttttattttggttgccatagtaaccaatgacgtcagtttccatggc
aaccggtggtcacacccggccccacctctcaaattttgatcttctacatt
caaggaacaatattcaatcataaaatccctttgcacaagctgctgcacac
gggaagctttttcgcgacatagtggcccctactaaatgaaaagttcattt
tttcttctttattttcaaaaaatttggaaatttttttctcaagtactatt
gcagttctctgattTATTCTGAATATAAAGATCTTTTTTAcgcttataaa
aaggaattttttagtcgcattttttaaagaacctttttgtttttaatgga
ttaagatttttcataagaaaacagggtatctacgacctgtgtgtacaata
caatgtgtatattttgtgtaacgcttcattcaaaatccataatgctgccg
gagtcacgtttcacgcgtcttcgtcgttgatgttctaatattatgcgaaa
ttttcgactttaagtcgtcttgttgtaaatttttaataatcttTTAGAAT
AAATATCTAGCATCAGAAAATCATAATAATTGTCTGCTACTAACTCAAAT
TaattatttcttcaaaaaaaagaaagattttagaCAAAGTACAATGTTTT
CGAACCATGCAGGTTTAACTATAGCTTTAAGACTGAAAAGATCAGGTCTG
CTtttctttgaacttgaaaatgattttgcataattttgcaagattctagt
tgtttttggaaggtataAAATGGATGTTCTTAAATATAATTGGGCATTCC
ACATCATTAATGCTTCTATCCTATCCTCCATCTTGTTAGTGCCTCTAGTC
TAATNAAAaatggatgttcttatatataattGGGTATTCCACATCATTAA
TGTTTCTCTCCTATCCTCCAACTTGTTAGTGCCTCTAGTCTAATTCACTG
AACTCGGCATAATAAAAAGTTACCAAAAAAGCAAAGTCCCAGcaagaagt
agactctagtctatgtCTAGGTTATAAATTAAATATGGCCTAAATACTAC
CCCGACCCTAGAAGAGGAAGAAAAATGCCTATTTCTGAAAGCGGTTCTGA
TTACTTTGATACCCCTCGCCTATCCATCTCTTGTCAGTTCCTTCTTGAAA
GAATGACCTTGAAACATCCAAAAGAAAGGAGACCCTGAATCTATCCGAGG
AGCTATCTATGATCGAATTTTAGATTATCTTCAGAGTCTGTCGTAAAAGT
GTGTAAACATTTTCTTAGCCCCCGCTTATGATGCGCCACacacccactgg
gaccccagcccaatgaagtataacccgaagggctagaagcgaatctcctt
ggtaggatttgaagccaacaaatcctaccaaagttgcgcagcCAAGCGCG
gccgcgtggtttttacacaaatttcGGATTGAAACTAAAGTTTACCtctg
aatttcgaaaaacatATCACTCAAAATAAAGGagtcgctagattcaatct
gtcgttaCTTTTTCTTACCTGAGAAAGGTTATAGAttcacttctagccct
tcgggcttatacttcattgcatcagccccactggaaaatttgttcaaaat
tattttgttcccggtgggaaaactaccctacaatttcagccccagtgaga
aatcgactttgattttatccccattcgaaattcaaagtATAAGatttgta
ctccaaaaccactggattttttaagcttggaacaatagaatttctatcac
CTTGGGATTTCGAAAGAACattttatccccgctgtgggGAGaattttcac
cggggctgtgagacaggcttgtttaaaaagttattcaCATAAAAAAGAAA
CAACTTCTTTTGAAACAAAGTCGGCTGAAATTTGATAggatataagaaat
attttNATAAAAAAGACAACTTCTTTTGAAACAAAGTCGGCTGAAATTTG
ATAggatataagaaatattttgtccaAAAAGAATTTAGCACTTTTCAAac
tggtctttaaaatacacGTGAACGTAAGAGCACTTGTCCAATCTCGCTGA
ACTTTTGGTTACAAAGTTTTGTGGTCGATAACTTGTATTGACAATTAACA
CAGGTAAAAAGTCTATGACGAATTTAAATTCCCAGATATAAAATTTATGG
CTATAGGGATTAAGAACATATTTAGCTCAGTCTGTAAATCCACATTACCA
CAATCCTCGAGTAAGCTACATTTTGATACTTTTCTTTGTTAAAATACTGG
CTTATACGATCAGCATGCATGCTAATGAAACTAAATTGTTTCTATCCTAC
CATTTCGTTCGAACTGTTCGATAGTTTGATCCTTTCTTCTAAAATATGTA
CTTCTTACAGAAATTTTCAAAGCAAGCTAAAAACATGAAACTCAGGTTTA
AGAGCCACTATATTTCTCacttaaattttttaatcaagtaCTGAGAGAAA
GTTACAGAGGGAAGTTATACCTTACGTTTCTTAACTTAAGTAATAACCCT
GGTGTTGACCAATCTAAATCGTGGTTTTCAATCAAACAGTCTGATTATCT
AATTACTTAACTACGACCCCTACCCCAACTACAACGACCACCCGAGCCAT
CCATGCACCAGAATGTAAGTATTGTTTCAAGTTgaacaaaaatcattttc
ttcttcagcaTAATTATCTTTAATAAAGGCTGTCATTGCTAGTTTCTGGC
TGTTGTTAAAGTTTTAAGAATACTTAAAATACTAAAGGAGCAGCCGTTAA
CTTAATCGTGAAAATGTCTTTTGAAAGCTCTAATCTTTATTTTTCTCACT
TTAGGCAACGACTCTTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCG
ATTGGACAACAACAAACCACAATACTATGTTCAATGCAGCAATGGAATCG
CTTCTTGCCGTCAATGTCCACCTCAcatgtatttcaacaacaaatttGAT
GTCTGTGTTCGACGCACTGTACCAAAAGACTGGTA Coding sequence (CDS) from alignment at sc0000373:134195..140929+ >TCONS_00020886 ID=TCONS_00020886|Name=TCONS_00020886|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000373:134195..140929+ (Clytia hemisphaerica)
ATGAAGATCATCATTCTCGCCGTTCTTGTTGCagTTTGCAGCGCAGCAAA
ACCTCACCCCCATCAACCCTGCCCAGACACCTTATGTGTATGGAGATCAG
TTGGAGACATCTTCGCATATAACGAGCACAAACCATATTATTTTGTGACT
TGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGGAATT
CAACGAGAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatcaacaacaa
caacaacaactaccACAACAACTACGACCACTACCCCAACTACAACGACC
ACCCGAGCCGTCGATGTACCAGAATGCAACGACTCTTTGTGCAAATGGGT
TCCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATG
TTCAATGCAGCAATGGAATCGCTTCTTGCCGTCAATGTCCACCTCAcatg
tatttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAAAAGA
CTGGATGAAGATCATCATTCTCGCCGTTCTTGTTGCagTTTGCAGCGCAG
CAAAACCTCACCCCCATCAACCCTGCCCAGACACCTTATGTGTATGGAGA
TCAGTTGGAGACATCTTCGCATATAACGAGCACAAACCATATTATTTTGT
GACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTGG
AATTCAACGAGAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatcaaca
acaacaacaacaactaccACAACAACTACGACCACTACCCCAACTACAAC
GACCACCCGAGCCGTCGATGTACCAGAATGCAACGACTCTTTGTGCAAAT
GGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATAC
TATGTTCAATGCAGCAATGGAATCGCTTCTTGCCGTCAATGTCCACCTCA
catgtatttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTACCAA
AAGACTGGATGAAGATCATCATTCTCGCCGTTCTTGTTGCagTTTGCAGC
GCAGCAAAACCTCACCCCCATCAACCCTGCCCAGACACCTTATGTGTATG
GAGATCAGTTGGAGACATCTTCGCATATAACGAGCACAAACCATATTATT
TTGTGACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGT
TTGGAATTCAACGAGAAAAACAAAGCTTGTGTTCGTTCATTCAagaaatc
aacaacaacaacaacaactaccACAACAACTACGACCACTACCCCAACTA
CAACGACCACCCGAGCCGTCGATGTACCAGAATGCAACGACTCTTTGTGC
AAATGGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACA
ATACTATGTTCAATGCAGCAATGGAATCGCTTCTTGCCGTCAATGTCCAC
CTCAcatgtatttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTA
CCAAAAGACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020886-exon-sc0000373-1491911889:134195..134458 | TCONS_00020886-exon-sc0000373-1491911889:134195..134458 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1510915933:134195..134458 | TCONS_00020886-exon-sc0000373-1510915933:134195..134458 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1575043694:134195..134458 | TCONS_00020886-exon-sc0000373-1575043694:134195..134458 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1491911889:134668..134958 | TCONS_00020886-exon-sc0000373-1491911889:134668..134958 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1510915933:134668..134958 | TCONS_00020886-exon-sc0000373-1510915933:134668..134958 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1575043694:134668..134958 | TCONS_00020886-exon-sc0000373-1575043694:134668..134958 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1491911889:140749..140929 | TCONS_00020886-exon-sc0000373-1491911889:140749..140929 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1510915933:140749..140929 | TCONS_00020886-exon-sc0000373-1510915933:140749..140929 | Clytia hemisphaerica | exon |
| TCONS_00020886-exon-sc0000373-1575043694:140749..140929 | TCONS_00020886-exon-sc0000373-1575043694:140749..140929 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:134195..140929 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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