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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020895 ID=TCONS_00020895|Name=TCONS_00020895|organism=Clytia hemisphaerica|type=transcript|length=2504bpRun BLAST on NCBI protein sequence of TCONS_00020895-protein >TCONS_00020895-protein ID=TCONS_00020895-protein|Name=TCONS_00020895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=629bp MKVGGQEIVKFLQDTFDALFAILMEDATQYGEMVSNAVVFCIGLLADKKYRun BLAST on NCBI transcript from alignment at sc0000373:286578..296881+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020895 ID=TCONS_00020895|Name=TCONS_00020895|organism=Clytia hemisphaerica|type=transcript|length=10304bp|location=Sequence derived from alignment at sc0000373:286578..296881+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000373:286578..296881+ >TCONS_00020895 ID=TCONS_00020895|Name=TCONS_00020895|organism=Clytia hemisphaerica|type=CDS|length=35910bp|location=Sequence derived from alignment at sc0000373:286578..296881+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020895 vs. Swiss-Prot (Human)
Match: DOCK1 (Dedicator of cytokinesis protein 1 OS=Homo sapiens GN=DOCK1 PE=1 SV=2) HSP 1 Score: 563.918 bits (1452), Expect = 3.037e-178 Identity = 325/736 (44.16%), Postives = 468/736 (63.59%), Query Frame = 2
Query: 137 KDRYQKIFSLAYINLASQDGTCLQDGQYELAVYKCETKKLEDCNTYLKLPSLKSEVSQQNK----KNLHNGGLAFSKTDSFKINFQLCSTKLAQNVDLLGLLKWRSQKDQLPIILPALMKVGGQEIVKFLQDTFDALFAILMEDATQ--YGEMVSNAVVFCIGLLADKKYHRFRSILDTYIENLFSSTKAYITLVDVLQKHIEGVKQSDLAGEGREYIMKYYKALEYLIKFIVRSRSLSERAAPGKGRLEFETSITNLFISITGTMTMTGDIVLPLQGCALKYVPAVFGDLLEVFNAEELGYFARDLVEKVAPNKLQRQKLTYIHNLVKSPLFFNPVSRSVIRPMIVGQLKMNMRNFEELQICADVLNEMLSNYDNVERVGETYEDVSYLVTNLFHCIVSTVIKMNLSSNLFGNYVAFIIGILDLMNDEHYAEYVNSY-RDXXXXXXXXXXXXXXXREFIKETVYPADWMSMMMVQNNVILGALQKFSEVLYDRFLVGDSFQFQIWSTFFQLSVIFITQDSLQLESFSEAKRRKVFERYSDMRITLAKRVFDMWQWLGINKIRLIQSMVKPFLEMTLVPETDLRKITLPIFFDMIECEFKNRQHFKQVESELIMHLDTLIESGLKGDEEYKELFQQILMDKFNQQRISFPRLCEVGLIFVETIXXXXXXXXDYRSVIQSEDNINNRMNCTVNILNFYQEIRREDMKQRYLYKLCDLHLSQQNFTEAAFTLLQHAEI 2323
KD+ +KIF+LA++ L DGT L+DG+++L VYK E KKLED TYL LPS K+E+ ++ K++ + G DSF+I+ +CSTKL QNVDLLGLLKWRS L L LMKV G E+VKFLQDT DALF I+ME++ + +V +A+VF IGL+AD+K+ F +L+TYI+ FS+T AY L VL+ +++G ++ + E + K KALE + KFIVRSR L + KG +F S+ LF SI M+ D + ++G ALKY+P + D+ VF+ +EL + + V L QKL + +V S LF R ++ PM+ QLK ++ E+L+ C +L+ +L + VG T V ++ L + TVI M S L GN+VA + IL M D HYA + ++ + ++++D LME F++F+ I + VYP DW+ M MVQN V L A+ +++++L +FL +F+ Q+W+ +F L+V F+TQ+SLQLE+FS AKR K+ +Y DMR + + DMW LG +KI+ I MV P LEMTL+PET+LRK T+PIFFDM++CEF + + F+ E+E+I LD +E G +GDE+YK LF +IL++ + + L + G FV+ + RL+ RLLDYR+++ E N NRM+CTVN+LNFY+EI RE+M RYLYKLCDLH N+TEAA+TLL HA++
Sbjct: 522 KDKSEKIFALAFVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAATYLSLPSTKAELEEKGHSATGKSMQSLGSCTISKDSFQISTLVCSTKLTQNVDLLGLLKWRSNTSLLQQNLRQLMKVDGGEVVKFLQDTLDALFNIMMENSESETFDTLVFDALVFIIGLIADRKFQHFNPVLETYIKKHFSATLAYTKLTKVLKNYVDGAEKPGV----NEQLYKAMKALESIFKFIVRSRILFNQLYENKGEADFVESLLQLFRSINDMMSSMSDQTVRVKGAALKYLPTIVNDVKLVFDPKELSKMFTEFILNVPMGLLTIQKLYCLIEIVHSDLFTQHDCREILLPMMTDQLKYHLERQEDLEACCQLLSHILEVLYRKD-VGPTQRHVQIIMEKLLRTVNRTVISMGRDSELIGNFVACMTAILRQMEDYHYAHLIKTFGKMRTDVVDFLMETFIMFKNLIGKNVYPFDWVIMNMVQNKVFLRAINQYADMLNKKFLDQANFELQLWNNYFHLAVAFLTQESLQLENFSSAKRAKILNKYGDMRRQIGFEIRDMWYNLGQHKIKFIPEMVGPILEMTLIPETELRKATIPIFFDMMQCEFHSTRSFQMFENEIITKLDHEVEGG-RGDEQYKVLFDKILLEHCRKHKY----LAKTGETFVKLVVRLMERLLDYRTIMHDE-NKENRMSCTVNVLNFYKEIEREEMYIRYLYKLCDLHKECDNYTEAAYTLLLHAKL 1246 The following BLAST results are available for this feature:
BLAST of TCONS_00020895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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