TCONS_00020898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020898
Unique NameTCONS_00020898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020898 ID=TCONS_00020898|Name=TCONS_00020898|organism=Clytia hemisphaerica|type=transcript|length=542bp
ACCaagcaagcaaacaaacaaaaagtttcttcaagAATCTACAAAGTTTT
CAAGCATGAAGATCATCATTCTCGCCGTTCTTGTTGCAGTTTGCAGCGCA
GCAAAACCTCATCCCCATCAACCCTGCCCAGACTCCTTATGTAAGTGGAG
ATCAGTTGGAGACATCTTTGCTTACAACGAGCACAAACCATATTATTTTG
TGACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGGTTTG
GAATTCAACGAGAAAAACAAAGCTTGTGTTCGCtcattcaaaaaattaac
aactACGACCACTACCACTACAACGACCACCACCCCAACTACAAAGACCA
CCCGAGCCATCGATGCACCAGAATGCAACGACTCTTTGTGCAAATGGGTT
CCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATGT
TCAATGCAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCAcatgt
atttcaacaacaaatttGATGTCTGTGTTCGACGCACTGTAC
Run BLAST on NCBI

protein sequence of TCONS_00020898-protein

>TCONS_00020898-protein ID=TCONS_00020898-protein|Name=TCONS_00020898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
PSKQTNKKFLQESTKFSSMKIIILAVLVAVCSAAKPHPHQPCPDSLCKWR
SVGDIFAYNEHKPYYFVTCTNSGPVCRRCADGLEFNEKNKACVRSFKKLT
TTTTTTTTTTTPTTKTTRAIDAPECNDSLCKWVPNGSLFRLDNNKPQYYV
QCSNGIASCRQCPPHMYFNNKFDVCVRRTV
Run BLAST on NCBI

transcript from alignment at sc0000373:129648..130590-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020898 ID=TCONS_00020898|Name=TCONS_00020898|organism=Clytia hemisphaerica|type=transcript|length=943bp|location=Sequence derived from alignment at sc0000373:129648..130590- (Clytia hemisphaerica)
ACCAAGCAAGCAAACAAACAAAAAGTTTCTTCAAGAATCTACAAAGTTTT
CAAGCATGAAGATCATCATTCTCGCCGTTCTTGTTGCAGGTAAATTTCAA
TCTCATTTTTGAAGAATTTTATTATCAATTATTATAAAAACATTTTAGTT
TCAATAAAAAAGTAAAAATTAGCAAAGGCAAACATAATGGTGATATAAGT
ATGAAGTAATTTCATCTCCATCTGAATGCTGACATCGATACTTAATAAGT
TCCAAGCCAAAAGTTAAATCACTTTTTACGCTCTTCCTTTCAGTTTGCAG
CGCAGCAAAACCTCATCCCCATCAACCCTGCCCAGACTCCTTATGTAAGT
GGAGATCAGTTGGAGACATCTTTGCTTACAACGAGCACAAACCATATTAT
TTTGTGACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTGATGG
TTTGGAATTCAACGAGAAAAACAAAGCTTGTGTTCGCTCATTCAAAAAAT
TAACAACTACGACCACTACCACTACAACGACCACCACCCCAACTACAAAG
ACCACCCGAGCCATCGATGCACCAGAATGTAAGTATTGTTTCAAGTTGAA
CAAAAATCATCTTCTTCTTTAGCATAATTATTCTTAATAAAGGCTGTCAT
TGCTAGTTTCTGGCTTTTGTTAAAGTTTTAATAATACTTAAAACACTGAT
TTAAGGAGCAATCGTTAATTTAATCTTCAAAATGTCTTTTAAAAGCTCTA
ATTTTTCTCTTCCTCATTTCTTAAGGCAACGACTCTTTGTGCAAATGGGT
TCCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATACTATG
TTCAATGCAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTCACATG
TATTTCAACAACAAATTTGATGTCTGTGTTCGACGCACTGTAC

Coding sequence (CDS) from alignment at sc0000373:129648..130590-

>TCONS_00020898 ID=TCONS_00020898|Name=TCONS_00020898|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000373:129648..130590- (Clytia hemisphaerica)
GCAACGACTCTTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCGATTG
GACAACAACAAACCACAATACTATGTTCAATGCAGCAATGGAATCGCTTC
ATGCCGTCAATGTCCACCTCACATGTATTTCAACAACAAATTTGATGTCT
GTGTTCGACGCACTGTATTTGCAGCGCAGCAAAACCTCATCCCCATCAAC
CCTGCCCAGACTCCTTATGTAAGTGGAGATCAGTTGGAGACATCTTTGCT
TACAACGAGCACAAACCATATTATTTTGTGACTTGCACAAACAGTGGTCC
AGTATGCAGAAGATGTGCTGATGGTTTGGAATTCAACGAGAAAAACAAAG
CTTGTGTTCGCTCATTCAAAAAATTAACAACTACGACCACTACCACTACA
ACGACCACCACCCCAACTACAAAGACCACCCGAGCCATCGATGCACCAGA
ATCCAAGCAAGCAAACAAACAAAAAGTTTCTTCAAGAATCTACAAAGTTT
TCAAGCATGAAGATCATCATTCTCGCCGTTCTTGTTGCAGGCAACGACTC
TTTGTGCAAATGGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAACA
AACCACAATACTATGTTCAATGCAGCAATGGAATCGCTTCATGCCGTCAA
TGTCCACCTCACATGTATTTCAACAACAAATTTGATGTCTGTGTTCGACG
CACTGTATTTGCAGCGCAGCAAAACCTCATCCCCATCAACCCTGCCCAGA
CTCCTTATGTAAGTGGAGATCAGTTGGAGACATCTTTGCTTACAACGAGC
ACAAACCATATTATTTTGTGACTTGCACAAACAGTGGTCCAGTATGCAGA
AGATGTGCTGATGGTTTGGAATTCAACGAGAAAAACAAAGCTTGTGTTCG
CTCATTCAAAAAATTAACAACTACGACCACTACCACTACAACGACCACCA
CCCCAACTACAAAGACCACCCGAGCCATCGATGCACCAGAATCCAAGCAA
GCAAACAAACAAAAAGTTTCTTCAAGAATCTACAAAGTTTTCAAGCATGA
AGATCATCATTCTCGCCGTTCTTGTTGCAGGCAACGACTCTTTGTGCAAA
TGGGTTCCAAATGGTTCTTTATTCCGATTGGACAACAACAAACCACAATA
CTATGTTCAATGCAGCAATGGAATCGCTTCATGCCGTCAATGTCCACCTC
ACATGTATTTCAACAACAAATTTGATGTCTGTGTTCGACGCACTGTATTT
GCAGCGCAGCAAAACCTCATCCCCATCAACCCTGCCCAGACTCCTTATGT
AAGTGGAGATCAGTTGGAGACATCTTTGCTTACAACGAGCACAAACCATA
TTATTTTGTGACTTGCACAAACAGTGGTCCAGTATGCAGAAGATGTGCTG
ATGGTTTGGAATTCAACGAGAAAAACAAAGCTTGTGTTCGCTCATTCAAA
AAATTAACAACTACGACCACTACCACTACAACGACCACCACCCCAACTAC
AAAGACCACCCGAGCCATCGATGCACCAGAATCCAAGCAAGCAAACAAAC
AAAAAGTTTCTTCAAGAATCTACAAAGTTTTCAAGCATGAAGATCATCAT
TCTCGCCGTTCTTGTTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011721XLOC_011721Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020898-proteinTCONS_00020898-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020898-exon-sc0000373-1575043694:130502..130590TCONS_00020898-exon-sc0000373-1575043694:130502..130590Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1575043694:130013..130297TCONS_00020898-exon-sc0000373-1575043694:130013..130297Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1575043694:129648..129815TCONS_00020898-exon-sc0000373-1575043694:129648..129815Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1510915933:130502..130590TCONS_00020898-exon-sc0000373-1510915933:130502..130590Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1510915933:130013..130297TCONS_00020898-exon-sc0000373-1510915933:130013..130297Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1510915933:129648..129815TCONS_00020898-exon-sc0000373-1510915933:129648..129815Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1491911889:130502..130590TCONS_00020898-exon-sc0000373-1491911889:130502..130590Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1491911889:130013..130297TCONS_00020898-exon-sc0000373-1491911889:130013..130297Clytia hemisphaericaexon
TCONS_00020898-exon-sc0000373-1491911889:129648..129815TCONS_00020898-exon-sc0000373-1491911889:129648..129815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:129648..130590 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.659661	0.474983	0.882812	0.758957	1.52422	2.37344	1.70941	1.49008	2.19892	1.29781	0.666145	1.35466	5.69411	5.24519	5.19059	2.1592	1.48431	1.24231	0	0	1.39113	0	1.43531	0.6892	0.416735	1.73063	0.252051	0	0.940123	0.433629
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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