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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020915 ID=TCONS_00020915|Name=TCONS_00020915|organism=Clytia hemisphaerica|type=transcript|length=1353bp
TTGATATAGAAAAAAATGTGCGCGATACTTcggaaaataaaattcaaaaa
aggtgGTAATAAAATCATAATAACAGAAATTAAACAAAACTTAAAAANAA
AAAATGTGCGCGATACTTcggaaaataaaattcaaaaaaggtgGTAATAA
AATCATAATaacagaaattaaaaaaaacttaagatTGTTTTCCAAGCTTG
ACTGTATATTTTTCATTATGCTGTTGTAATGGCTAGTTTTCAATCAGTCA
CAAAGGTTTTTCAAAGTGCCATTTTTCACTGTTCAAGTTTGTGTCtgcta
aatttgaaaaaaaggttcTTCAGGTTAGAAATAACATCCGATAAGATCGT
CAAGTTACACCAGCCCAACATATGCGAGGGTGACAACAACAATCATGAAG
AATGAATATAATTGGAGATAAGCAGCTCTGGACGTTCGGTTGGACGAATC
TTTTTCGTCTTCCAAAAAATTATCATATTCTTGATTTCCAAAGGAATCAT
GTTgcaattttttcttcattttcgtaGCGGCATGTTCTTCTCGCGCTGGG
AAGACTGATTTTGGAATCTGGGAATCTGATTTTGGCGGTGGCTTTATGCC
CAGTACCCATCTTAGCGAAANGAAGACTCTGATTTTGGCTGTGGCTTTGT
GTCCAGTACCCATCTTAGCGAAGACGCATAAATCCTGGTTACAAACAGAC
ACATCTTCGATGGTATATCTGTAAAGCCGACGTTTGGAGAAAGAGTACGT
CTTCGATTTCAAATCCGATCGGGAAAATTCCCGGCAAAGGCTGTCGTTTG
ATGAGCAGAGAGCAATAGCCAGTTGGTTATGCTCCTTGAACCCCAAATTA
TAGGGGATATCATACATAAAATGAATTATGTATGATTCATTAAAGGTTCT
GACCTCCCATGACAGTTTGCCAGAAACACCATGATGAAGCTTGAAGAAAG
CCGAATCCTTCTCCGTAACAAAAGCTTCCTCGTACCCAGGGTGTACAGTC
TCTGCAGGGATATCAACATCTCCGTATTCTATTTCCCATTCACGTTCGAT
GAGAGACCATTTACTGTAATTAATGATGGATCCAGCTAAAGCAACTTCGG
CGTCGGGTAGTAAAGATTCGATGTTTTCTCCAGCCAGAGTTGCACCTTTG
TTGACAGTGTTCGATAGAGTACACCGTTGTAGAAGCAAACTTTAGTAATA
ATGATAAGGTCAAAACAACAACACTGAGAAAAGCCATTGCATCGATATCA
TCTTTACACAATGCTTCTACTTCGTGTTATCAAGACAAAGTGTTTGAAAT
TTGATCGACATTTTCTGATGTGACTTCGAAATTCATAAATCCAGTTAATC
CAG Run BLAST on NCBI protein sequence of TCONS_00020915-protein >TCONS_00020915-protein ID=TCONS_00020915-protein|Name=TCONS_00020915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MYDIPYNLGFKEHNQLAIALCSSNDSLCREFSRSDLKSKTYSFSKRRLYR
YTIEDVSVCNQDLCVFAKMGTGHKATAKIRVFXSLRWVLGIKPPPKSDSQ
IPKSVFPAREEHAATKMKKKLQHDSFGNQEYDNFLEDEKDSSNRTSRAAY
LQLYSFFMIVVVTLAYVGLV Run BLAST on NCBI transcript from alignment at sc0000373:48377..49729 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020915 ID=TCONS_00020915|Name=TCONS_00020915|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at sc0000373:48377..49729 (Clytia hemisphaerica)
CTGGATTAACTGGATTTATGAATTTCGAAGTCACATCAGAAAATGTCGAT
CAAATTTCAAACACTTTGTCTTGATAACACGAAGTAGAAGCATTGTGTAA
AGATGATATCGATGCAATGGCTTTTCTCAGTGTTGTTGTTTTGACCTTAT
CATTATTACTAAAGTTTGCTTCTACAACGGTGTACTCTATCGAACACTGT
CAACAAAGGTGCAACTCTGGCTGGAGAAAACATCGAATCTTTACTACCCG
ACGCCGAAGTTGCTTTAGCTGGATCCATCATTAATTACAGTAAATGGTCT
CTCATCGAACGTGAATGGGAAATAGAATACGGAGATGTTGATATCCCTGC
AGAGACTGTACACCCTGGGTACGAGGAAGCTTTTGTTACGGAGAAGGATT
CGGCTTTCTTCAAGCTTCATCATGGTGTTTCTGGCAAACTGTCATGGGAG
GTCAGAACCTTTAATGAATCATACATAATTCATTTTATGTATGATATCCC
CTATAATTTGGGGTTCAAGGAGCATAACCAACTGGCTATTGCTCTCTGCT
CATCAAACGACAGCCTTTGCCGGGAATTTTCCCGATCGGATTTGAAATCG
AAGACGTACTCTTTCTCCAAACGTCGGCTTTACAGATATACCATCGAAGA
TGTGTCTGTTTGTAACCAGGATTTATGCGTCTTCGCTAAGATGGGTACTG
GACACAAAGCCACAGCCAAAATCAGAGTCTTCNTTTCGCTAAGATGGGTA
CTGGGCATAAAGCCACCGCCAAAATCAGATTCCCAGATTCCAAAATCAGT
CTTCCCAGCGCGAGAAGAACATGCCGCtacgaaaatgaagaaaaaattgc
AACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACGAA
AAAGATTCGTCCAACCGAACGTCCAGAGCTGCTTATCTCCAATTATATTC
ATTCTTCATGATTGTTGTTGTCACCCTCGCATATGTTGGGCTGGTGTAAC
TTGACGATCTTATCGGATGTTATTTCTAACCTGAAgaacctttttttcaa
atttagcaGACACAAACTTGAACAGTGAAAAATGGCACTTTGAAAAACCT
TTGTGACTGATTGAAAACTAGCCATTACAACAGCATAATGAAAAATATAC
AGTCAAGCTTGGAAAACAatcttaagttttttttaatttctgttATTATG
ATTTTATTACcaccttttttgaattttattttccgAAGTATCGCGCACAT
TTTTTNTTTTTAAGTTTTGTTTAATTTCTGTTATTATGATTTTATTACca
ccttttttgaattttattttccgAAGTATCGCGCACATTTTTTTCTATAT
CAA Coding sequence (CDS) from alignment at sc0000373:48377..49729 >TCONS_00020915 ID=TCONS_00020915|Name=TCONS_00020915|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000373:48377..49729 (Clytia hemisphaerica)
ATGTATGATATCCCCTATAATTTGGGGTTCAAGGAGCATAACCAACTGGC
TATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAATTTTCCCGAT
CGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCGGCTTTACAGA
TATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTATGCGTCTTCGC
TAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGAGTCTTCNTTT
CGCTAAGATGGGTACTGGGCATAAAGCCACCGCCAAAATCAGATTCCCAG
ATTCCAAAATCAGTCTTCCCAGCGCGAGAAGAACATGCCGCtacgaaaat
gaagaaaaaattgcAACATGATTCCTTTGGAAATCAAGAATATGATAATT
TTTTGGAAGACGAAAAAGATTCGTCCAACCGAACGTCCAGAGCTGCTTAT
CTCCAATTATATTCATTCTTCATGATTGTTGTTGTCACCCTCGCATATGT
TGGGCTGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020915-exon-sc0000373-1491911889:48377..49729 | TCONS_00020915-exon-sc0000373-1491911889:48377..49729 | Clytia hemisphaerica | exon |
| TCONS_00020915-exon-sc0000373-1510915933:48377..49729 | TCONS_00020915-exon-sc0000373-1510915933:48377..49729 | Clytia hemisphaerica | exon |
| TCONS_00020915-exon-sc0000373-1575043694:48377..49729 | TCONS_00020915-exon-sc0000373-1575043694:48377..49729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000373 | supercontig | sc0000373:48377..49729 . |
Blast
The following BLAST results are available for this feature:
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