|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020940 ID=TCONS_00020940|Name=TCONS_00020940|organism=Clytia hemisphaerica|type=transcript|length=2883bp
AACTTGTTGAGCAGTGTTTTGataccgtgagatcagATTTAGAAGTATGG
GAATATACGGCGGAATCTAACAGAACAACCAAGGATGGCGACACAAATGA
CTCAAGGGGTAATTCTACTCCTGGTTTGTTTCACACTGGCCAATGTTTAT
TACTTCATACAAAACTACAGCCAGAATACGTATTTCCAAGAGGTTAGAAG
GACTTTGACCATcgtcaaaaataaagaagagaACGTCGATGTTACTAACA
CGGCGAAATCAAGTTCCGGTGGGTTGACTCAAGTTAATGAGATATTGAAA
CGTTTACAAACTTTGGAAACGAAGCGAAATGTAGACATGGCcaataaaac
aaaaactgtTTTGGATGGACTGATGGGTAAGTTCTGGCCAAACGGTCAAC
AGGCTAGTGTGGCTGACGAAGCTGAAAATCTGAAATGGTTAAATCGTACG
AATGCGAAAGGCTTCGCGGAATACGGCGACGGTACGTGTCCCGTCACAAC
AGATCGTCCACCGTGGCAAAAATTACTTCGCGAATGGGTAAAAATCGCTA
AGAAGTATAAAATCCGTTATTTCTTATCTGCCGGTTCGTTACTCGGGGCG
TGGCGTGCGGAAGACGTGATCCCGTATGATGCAGATATGGACATACGTAT
CCACAtcgatgattttgaaaaactctaTCCGTTACGTCAACGTAAGTTCG
TGTGGGACGCGTATGATGATTACGAATcgcatttttattttacgaaggAT
TGGCGATTGCCGTACGATTTACGGCGTCGGTATACGTGTAAAGGGAAGAA
GGTTCATGAGTATGAAGGACAATGCTCATTTACGGACCCGAACGCACGTA
TGATTTACCGTCAATGGCATATGGACTTATACGCATACACAACGTATACT
GACGTCGTCAAATTTTTGCCACGCGACGCCGCGTACGAGTACCGTAAGGA
AGATATTCTACCGATCACTAAATGTATGTTTATGGAAATTGAAACACGAT
GTCCACAAAATCCGACGGCCATTTTTAAAAGACTTTACGGTAGTTCAAGA
CCTTTGCCTACCAAGAAATGTGTAAACAAAAAGTACGTTAGAGTCTAGAT
TTAGAGCATCATGAATTTAAGCGTTCTGACATTTGCGTTTTgtaataggg
ggggggggttcaactTTTTCAGTGTATGTTTTTAGTTAGCCATAAGATAG
CATTTTGAAGCTTCTGTCTTGTTTATCtcaatattttatctttttttaac
attatatTCTTTACTCGCGCTATCATTTGGGAATTTTTCCTCACCATGAC
CTTTTTAGGGAAATTCAAGTTTAcaaacactgggcgaaataagagatatc
ttgaaaatatgatatttccaattacttttgtaaatatggaaatatgactt
ttctatatttccaaagttgaggaaatatcatatttcatgatatttccaaa
tctgaaacatcaaattttcaaaatatgatgtttcaacaatgaatttcaga
aaagtcatatttccatcaaggtcaaattttatcaatgaatacacatacac
gttttttataagactaTCCAAGATTTTGAAGCCTGcggatgttcttaagt
ttttgagttttaagcctagaaaTGATCTTAAAGAGTTCTTATTTTCTCAC
TATTTTGTTGGTATATTtctccattttcctaagaaattggatgttttaga
gtccacaaacatataaaaaaaacgtgtaagctaacgaaattttgtacaaa
atttcgaatgtttttttcaaataattatcAATAAGATTCTATTATCATGA
AACTTTGAACCTATCTCGTTAAGTTGacaaagttcttataaaattagtGT
AATGATATcttataaaatttacaaaaacaacaacaatttatgaaaaataa
caattacATTTGGAGACGCTTATGCATCATGTTATAACTTGCAATACCAA
AATATCTTTGatgcaaaatatttgtttaaggTGAAACGATCCTCCTTCGA
AAAAGCCACTAAGGATTTCTTAATTCTAAAAAAATAGGGTGTCAGATATG
AAATATATCAATATTGCCCTAAAACAGAGTACAGGACAACAGCAGATAGG
ACATAGACAACAGGACATAAAGTTAGAGGACTTGAATAATTAGAAGTTCC
CCTTTAATTATGTCTTCTCCTTCAAGAGTATTCGCTGGTCTTCGCCAGCG
ATCAATAACCTCCTTTGCTTCGACTTTGATTTTGCCTTGTTTGACGTCAT
TGTCGAGAAAGGCGAGGTCGGTCACGTGTCTACTTTCAATACATGAATCC
ACGTGTCGATGTGCGATAATGATGTGACCACCTGGTTTCACATATCGTAT
AATGTCCGTCAAGCATTCGTACCCAGGGTGTGATGCTGAACAAAACAAAA
CACCTGATGAACAAACAACGTCATATTCTTGAGACGGGATGACAGAATCA
TCGTCTCCACTTTTCAGTTGATAGAATTTCTGCATTTTTCCTTTCGATCG
AGCAACATCAATGATTTCTTTGCACGGATCTAACCCATCAATATTTTGAT
AACCATGTTCAGAAAGAAGATCAGAGGTTGCGCCTGTACCACATCCATAG
TCAAGGATCTTGATATTTTTCTCATTCGAATACAACTTCAGGATTTTTGT
AGCCACAGCTTTAGGGCCAGAATATTCTTCCTCAGAAGCCCACTCATCGT
ACGTTTTTGCGTATTTACTGTAAAGTTCTTGTTGCTTGGCAAACTCTTCA
CTCGTATCTTCACGTACATCGATGAAATATGACCATGCTACACTGGAAAA
GTTTTCCGCTTGTTGTGTTACTGCAGCCATCCTTTTTTAGGTATGTTATG
TCTGCACAACTCTCTCTGCAGAAAATGACACTT Run BLAST on NCBI transcript from alignment at sc0000374:158561..161872+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020940 ID=TCONS_00020940|Name=TCONS_00020940|organism=Clytia hemisphaerica|type=transcript|length=3312bp|location=Sequence derived from alignment at sc0000374:158561..161872+ (Clytia hemisphaerica)
AACTTGTTGAGCAGTGTTTTGataccgtgagatcaggtaacttgcatcat
tggagggaaacttgcatagccatcaaatgactgaccaatcaaagcagcaa
aatttcaaagcaaatgaactacgcagcttcgctcacagctctactctact
atttttgttttgatttaactttgtattttaatgaccagccaggtcattca
tttgagggctatgcatgttagcctccattgatgcaagttacccgatctca
cggtatatcaCGGCTTGCACTTTTGGTTTTTGGTAAAACGCATTTTAAAG
AGAGAATGATCTAAATATCTAACTGTAAAAAGAACAAGCGGATGCTCCTC
AGATAGAAAATAGGCTTATAATAGAAAGTCAcagatttcaaactttcagc
caAACTCTATCAGGTTCTGGTGTCATGAAATAAGTGTATtagtatatttt
ttgttttcatttcagATTTAGAAGTATGGGAATATACGGCGGAATCTAAC
AGAACAACCAAGGATGGCGACACAAATGACTCAAGGGGTAATTCTACTCC
TGGTTTGTTTCACACTGGCCAATGTTTATTACTTCATACAAAACTACAGC
CAGAATACGTATTTCCAAGAGGTTAGAAGGACTTTGACCATcgtcaaaaa
taaagaagagaACGTCGATGTTACTAACACGGCGAAATCAAGTTCCGGTG
GGTTGACTCAAGTTAATGAGATATTGAAACGTTTACAAACTTTGGAAACG
AAGCGAAATGTAGACATGGCcaataaaacaaaaactgtTTTGGATGGACT
GATGGGTAAGTTCTGGCCAAACGGTCAACAGGCTAGTGTGGCTGACGAAG
CTGAAAATCTGAAATGGTTAAATCGTACGAATGCGAAAGGCTTCGCGGAA
TACGGCGACGGTACGTGTCCCGTCACAACAGATCGTCCACCGTGGCAAAA
ATTACTTCGCGAATGGGTAAAAATCGCTAAGAAGTATAAAATCCGTTATT
TCTTATCTGCCGGTTCGTTACTCGGGGCGTGGCGTGCGGAAGACGTGATC
CCGTATGATGCAGATATGGACATACGTATCCACAtcgatgattttgaaaa
actctaTCCGTTACGTCAACGTAAGTTCGTGTGGGACGCGTATGATGATT
ACGAATcgcatttttattttacgaaggATTGGCGATTGCCGTACGATTTA
CGGCGTCGGTATACGTGTAAAGGGAAGAAGGTTCATGAGTATGAAGGACA
ATGCTCATTTACGGACCCGAACGCACGTATGATTTACCGTCAATGGCATA
TGGACTTATACGCATACACAACGTATACTGACGTCGTCAAATTTTTGCCA
CGCGACGCCGCGTACGAGTACCGTAAGGAAGATATTCTACCGATCACTAA
ATGTATGTTTATGGAAATTGAAACACGATGTCCACAAAATCCGACGGCCA
TTTTTAAAAGACTTTACGGTAGTTCAAGACCTTTGCCTACCAAGAAATGT
GTAAACAAAAAGTACGTTAGAGTCTAGATTTAGAGCATCATGAATTTAAG
CGTTCTGACATTTGCGTTTTgtaatagggggggggggttcaactTTTTCA
GTGTATGTTTTTAGTTAGCCATAAGATAGCATTTTGAAGCTTCTGTCTTG
TTTATCtcaatattttatctttttttaacattatatTCTTTACTCGCGCT
ATCATTTGGGAATTTTTCCTCACCATGACCTTTTTAGGGAAATTCAAGTT
TAcaaacactgggcgaaataagagatatcttgaaaatatgatatttccaa
ttacttttgtaaatatggaaatatgacttttctatatttccaaagttgag
gaaatatcatatttcatgatatttccaaatctgaaacatcaaattttcaa
aatatgatgtttcaacaatgaatttcagaaaagtcatatttccatcaagg
tcaaattttatcaatgaatacacatacacgttttttataagactaTCCAA
GATTTTGAAGCCTGcggatgttcttaagtttttgagttttaagcctagaa
aTGATCTTAAAGAGTTCTTATTTTCTCACTATTTTGTTGGTATATTtctc
cattttcctaagaaattggatgttttagagtccacaaacatataaaaaaa
acgtgtaagctaacgaaattttgtacaaaatttcgaatgtttttttcaaa
taattatcAATAAGATTCTATTATCATGAAACTTTGAACCTATCTCGTTA
AGTTGacaaagttcttataaaattagtGTAATGATATcttataaaattta
caaaaacaacaacaatttatgaaaaataacaattacATTTGGAGACGCTT
ATGCATCATGTTATAACTTGCAATACCAAAATATCTTTGatgcaaaatat
ttgtttaaggTGAAACGATCCTCCTTCGAAAAAGCCACTAAGGATTTCTT
AATTCTAAAAAAATAGGGTGTCAGATATGAAATATATCAATATTGCCCTA
AAACAGAGTACAGGACAACAGCAGATAGGACATAGACAACAGGACATAAA
GTTAGAGGACTTGAATAATTAGAAGTTCCCCTTTAATTATGTCTTCTCCT
TCAAGAGTATTCGCTGGTCTTCGCCAGCGATCAATAACCTCCTTTGCTTC
GACTTTGATTTTGCCTTGTTTGACGTCATTGTCGAGAAAGGCGAGGTCGG
TCACGTGTCTACTTTCAATACATGAATCCACGTGTCGATGTGCGATAATG
ATGTGACCACCTGGTTTCACATATCGTATAATGTCCGTCAAGCATTCGTA
CCCAGGGTGTGATGCTGAACAAAACAAAACACCTGATGAACAAACAACGT
CATATTCTTGAGACGGGATGACAGAATCATCGTCTCCACTTTTCAGTTGA
TAGAATTTCTGCATTTTTCCTTTCGATCGAGCAACATCAATGATTTCTTT
GCACGGATCTAACCCATCAATATTTTGATAACCATGTTCAGAAAGAAGAT
CAGAGGTTGCGCCTGTACCACATCCATAGTCAAGGATCTTGATATTTTTC
TCATTCGAATACAACTTCAGGATTTTTGTAGCCACAGCTTTAGGGCCAGA
ATATTCTTCCTCAGAAGCCCACTCATCGTACGTTTTTGCGTATTTACTGT
AAAGTTCTTGTTGCTTGGCAAACTCTTCACTCGTATCTTCACGTACATCG
ATGAAATATGACCATGCTACACTGGAAAAGTTTTCCGCTTGTTGTGTTAC
TGCAGCCATCCTTTTTTAGGTATGTTATGTCTGCACAACTCTCTCTGCAG
AAAATGACACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020940-exon-sc0000374-1491911889:158561..158596 | TCONS_00020940-exon-sc0000374-1491911889:158561..158596 | Clytia hemisphaerica | exon |
| TCONS_00020940-exon-sc0000374-1510915933:158561..158596 | TCONS_00020940-exon-sc0000374-1510915933:158561..158596 | Clytia hemisphaerica | exon |
| TCONS_00020940-exon-sc0000374-1575043694:158561..158596 | TCONS_00020940-exon-sc0000374-1575043694:158561..158596 | Clytia hemisphaerica | exon |
| TCONS_00020940-exon-sc0000374-1491911889:159026..161872 | TCONS_00020940-exon-sc0000374-1491911889:159026..161872 | Clytia hemisphaerica | exon |
| TCONS_00020940-exon-sc0000374-1510915933:159026..161872 | TCONS_00020940-exon-sc0000374-1510915933:159026..161872 | Clytia hemisphaerica | exon |
| TCONS_00020940-exon-sc0000374-1575043694:159026..161872 | TCONS_00020940-exon-sc0000374-1575043694:159026..161872 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000374 | supercontig | sc0000374:158561..161872 + |
Blast
The following BLAST results are available for this feature:
|
