TCONS_00020970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020970
Unique NameTCONS_00020970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020970 ID=TCONS_00020970|Name=TCONS_00020970|organism=Clytia hemisphaerica|type=transcript|length=818bp
AATAAATCCATTTTCTACAAGACCTACAACTACAACCACCAGCAAGGTTT
CAAACCACGCTGCGGCATTAATGGCAATGAATtctgatttaaaaaatgtt
ggtccagttccctggaaagggtgtgattacacttccaaatgacttttttt
tacaataacatttgtctactcacaaatccaaaaatataGGTTATAAAACC
AATACGGGGGTCAACTTTCTTTACAACAAACCATCAAATCAAACTTACAA
AGATCAATCATGTAAATGTCACTTGTTTTCGTGATATTTCAATAATATTA
AAAcctttttgtatatatttggttcttcaaaaccatttccctTTCCCACA
GCAGGCTCTAAAGTTCATGTTGACCCCCGATCCAGATCTCCAGCAAACGT
GCCACACTCTGTAAACTggatctacaggatgtatttgaaaTAACAAGggt
gagagttacctgaatcaaatTGAAGATCTCAAGACAAAGATCGAaagctt
gaaacaaaacatAGTGACCAATTAATAACGTACAACATCCAGCTTacaaa
ccaaccaaaatttgttttttaattccCGAGATAGCACCTCGATTGTAACG
CCTTGATTATATactgaatgaatgaatgagatTTCTTTTCTCTAAACTTT
AACtagaaaaaatttacaaaatcaacCTGATGAAACAACCTTTAAGAGGT
TTACAAAGCCATCAGGCAGAATACACACTGAATAagaataattccgcaca
tgtgcACAAATCGGCTGGTGTATATGAGctccggcaaaatttctgggaaG
TAGCCTATCTGGTGGTGC
Run BLAST on NCBI

transcript from alignment at sc0000374:222972..223789

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020970 ID=TCONS_00020970|Name=TCONS_00020970|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at sc0000374:222972..223789 (Clytia hemisphaerica)
GCACCACCAGATAGGCTACttcccagaaattttgccggagCTCATATACA
CCAGCCGATTTGTgcacatgtgcggaattattctTATTCAGTGTGTATTC
TGCCTGATGGCTTTGTAAACCTCTTAAAGGTTGTTTCATCAGgttgattt
tgtaaattttttctaGTTAAAGTTTAGAGAAAAGAAatctcattcattca
ttcagtATATAATCAAGGCGTTACAATCGAGGTGCTATCTCGggaattaa
aaaacaaattttggttggtttgtAAGCTGGATGTTGTACGTTATTAATTG
GTCACTatgttttgtttcaagcttTCGATCTTTGTCTTGAGATCTTCAat
ttgattcaggtaactctcaccCTTGTTAtttcaaatacatcctgtagatc
cAGTTTACAGAGTGTGGCACGTTTGCTGGAGATCTGGATCGGGGGTCAAC
ATGAACTTTAGAGCCTGCTGTGGGAAagggaaatggttttgaagaaccaa
atatatacaaaaaggTTTTAATATTATTGAAATATCACGAAAACAAGTGA
CATTTACATGATTGATCTTTGTAAGTTTGATTTGATGGTTTGTTGTAAAG
AAAGTTGACCCCCGTATTGGTTTTATAACCtatatttttggatttgtgag
tagacaaatgttattgtaaaaaaaagtcatttggaagtgtaatcacaccc
tttccagggaactggaccaacattttttaaatcagaATTCATTGCCATTA
ATGCCGCAGCGTGGTTTGAAACCTTGCTGGTGGTTGTAGTTGTAGGTCTT
GTAGAAAATGGATTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011760XLOC_011760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020970-exon-sc0000374-1491911889:222972..223789TCONS_00020970-exon-sc0000374-1491911889:222972..223789Clytia hemisphaericaexon
TCONS_00020970-exon-sc0000374-1510915933:222972..223789TCONS_00020970-exon-sc0000374-1510915933:222972..223789Clytia hemisphaericaexon
TCONS_00020970-exon-sc0000374-1575043694:222972..223789TCONS_00020970-exon-sc0000374-1575043694:222972..223789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:222972..223789 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.757325	0.238058	1.03119	1.35721	1.36635	0.6208	0.823866	0.631058	0.638183	0.42565	0.921451	0.698364	0.968601	0.563305	0.562352	0.462791	0.131197	0.403418	0.247709	0.259209	0.619574	1.2363	0.400769	0.153494	1.18839	1.22807	0.941385	0.832863	0.323297	0.461143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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