TCONS_00020982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020982
Unique NameTCONS_00020982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020982 ID=TCONS_00020982|Name=TCONS_00020982|organism=Clytia hemisphaerica|type=transcript|length=386bp
GTTAAGCTCTCCCTCTAAGTTTTTTAAGACGTTCAAATATTTATTACTAT
ATACACTATCGTGATGCAAAACTCACAGCAGCGACACGTCCAGGTTTTCG
TCAGAATTAAACCAACTGATAAGTATGctgtaaaaaatattgaattatct
TCTGACAACAAATCATTGACTATTCATGCTCAAGAAGACAATACTACGAA
GTGTATGAATCATCAAATTGCTGACTGGCAGTACAGTGTTGATGGTATAT
TGCACAATGCATCACAAGAGGAAGTATACAAAAAATGCACAGCAAACCAA
GTTACACTTGCACTTAACGGATATAATAGCACAATTTTCTCTTATGGTCA
AACGGGAGCTGGAAAAACATTCACAATGACGGGTGA
Run BLAST on NCBI

protein sequence of TCONS_00020982-protein

>TCONS_00020982-protein ID=TCONS_00020982-protein|Name=TCONS_00020982-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MQNSQQRHVQVFVRIKPTDKYAVKNIELSSDNKSLTIHAQEDNTTKCMNH
QIADWQYSVDGILHNASQEEVYKKCTANQVTLALNGYNSTIFSYGQTGAG
KTFTMTG
Run BLAST on NCBI

transcript from alignment at sc0000376:101877..104081+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020982 ID=TCONS_00020982|Name=TCONS_00020982|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0000376:101877..104081+ (Clytia hemisphaerica)
GTTAAGCTCTCCCTCTAAGTTTTTTAAGGTAGGTACTTatttcttattca
aaaacacAAACATGAACCTCTTTTTATACACTAAATTAAAAGAAATCATC
ATCAACCAGAGACCTACCAGCACACAAAAAAACACACCAAAAAACATGTA
ATAGAGAACGATATAAATCCATTGATCATCAAATACTCTATGAATACCTT
AAATACTTTAATAATACAGCTATCCCTTGTATTCGTTCATCTTTTGTGGG
CGTTTCATTATTCTGAtttgtaagcaaaaaatgaCGCCGTGGGGGACATG
AACAACACATcctactttcattttcaaatatttttttccgccatatttgt
tttgattgaattttgcAGAACATCATTTCATTCGGTAAAGTAGTTCTTGT
GGTTGTTTCGGCAACATGACTTTTGTTTACAAGATGGTAgacataaacat
tcgaaaacacaTGTCAAAGAGACTGCTCATTTGACCCGTTTTTTGTTCCG
TTTTTTGCATAGTTTTGGTTCTTTGTACGTTTTTTACTTCTTCAGACGTT
CAAATATTTATTACTATATACACTATCGTGATGCAAAACTCACAGCAGCG
ACACGTCCAGGTTTTCGTCAGAATTAAACCAACTGATAAGTATGctgtaa
aaaatattgaattatctTCTGACAACAAATCATTGACTATTCATGCTCAA
GAAGACAATACTACGAAGTGTATGAATCATCAAATTGCTGACTGGCAGTA
CAGGTATTCCATTCAATTATTTAATTCATGTTTCAAGCTAGGCAATATTC
TGATATAAGCTGTAATAGGATGATTCCAGAGATTACTAGTGAGTTTCAGA
AAACAACATCAGTTCAGATCAGTAATATTGTCTTCTATcttttttaatgc
tttttataatgctcaattttttttaaaccctcAATTGATGTGAGGAATCT
TCAAATGATAAATTATTTGTCTGACTGAAAGCCACAAAGTTTTAGCTCAT
TTATAACTAAAACCACCAAGCTGTTATAAATAATTGGGGgtggggtttgt
aggggttcgaaatacagttttcttgtcaaaattttgacttaaattcCAAA
ATCCATacataaaaaaagaacaaaaaagtcTACACCATCATCAtctgttt
gaaaaaattattttgagccaCAAAAAGTCGTAAAAATATAGATAATTTTC
TTCCCATACATTGTGGTTAAAGAGCGTCATATAGTTAATTAACTACAGTT
TAGCAATAATTTTGTTtggataaaaaagaaaagtacaTTTTTTGTTGCAT
CTTAATTCTTTAGATCATCAACAATCCTTTAACAAGGATTGGGGCGGGGG
TTTATTTCTAGATAAAAAAACAGCCAGTGGGTAAAGTGCTTAGAATTTTG
CCTGATCAAgcataatttgaaatttttctatacCAGTTAATAGAAAGTAT
AAGAATGTTGAgttaaaagaattttaaagaaaaaacaatctaCGGTTAAA
AGGTTTGCTGTGTTGTAATCAGTCAAAAATAATTCAGCATGTGTAAATGG
CTTATATATTTGATATAAATATTGCTTTAccaatttgatttattttagtT
TTGGCTACTTTCAGTCAGTCATTTCTTACATTCCTTAGCCCTAATGATTA
CACTTTGATTAACTGAAAATTATTTCATGAAAATCCTTCTCTTTCCTAAA
GTAATGAACCTTTGATAAAAGAAACACTTAATAGTAAAATGTTAACAGTC
CCTTTTATAAGAATGCCAACTGGTTGACTTAGGGCGATATTGGGCTGGTC
TTatattgaaaaggattttctATAGACAGAAATTTTTCCCTCCTGTTGAA
ATACAAATACACTATTTTGGTTTTAGCAGTTAGAGTgttttggaaataaa
agaaCCATTACTCCCAGTTTTTTGGTAATCTAGAAATCCCTTTCAATAGC
ACTTTCTATTAAGCCCAGACACAAAATTTATTCCACTCTCAATCTATGTG
ACAACAAACACCATCACATTACAGGTTTCTTGaacttttctcatttttaa
ctCAGTGTTGATGGTATATTGCACAATGCATCACAAGAGGAAGTATACAA
AAAATGCACAGCAAACCAAGTTACACTTGCACTTAACGGATATAATAGCA
CAATTTTCTCTTATGGTCAAACGGGAGCTGGAAAAACATTCACAATGACG
GGTGA

Coding sequence (CDS) from alignment at sc0000376:101877..104081+

>TCONS_00020982 ID=TCONS_00020982|Name=TCONS_00020982|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000376:101877..104081+ (Clytia hemisphaerica)
ATGCAAAACTCACAGCAGCGACACGTCCAGGTTTTCGTCAGAATTAAACC
AACTGATAAGTATGctgtaaaaaatattgaattatctTCTGACAACAAAT
CATTGACTATTCATGCTCAAGAAGACAATACTACGAAGTGTATGAATCAT
CAAATTGCTGACTGGCAGTACAGTGTTGATGGTATATTGCACAATGCATC
ACAAGAGGAAGTATACAAAAAATGCACAGCAAACCAAGTTACACTTGCAC
TTAACGGATATAATAGCACAATTTTCTCTTATGGTCAAACGGGAGCTGGA
AAAACATTCACAATGACGGGTATGCAAAACTCACAGCAGCGACACGTCCA
GGTTTTCGTCAGAATTAAACCAACTGATAAGTATGctgtaaaaaatattg
aattatctTCTGACAACAAATCATTGACTATTCATGCTCAAGAAGACAAT
ACTACGAAGTGTATGAATCATCAAATTGCTGACTGGCAGTACAGTGTTGA
TGGTATATTGCACAATGCATCACAAGAGGAAGTATACAAAAAATGCACAG
CAAACCAAGTTACACTTGCACTTAACGGATATAATAGCACAATTTTCTCT
TATGGTCAAACGGGAGCTGGAAAAACATTCACAATGACGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011767XLOC_011767Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020982-proteinTCONS_00020982-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020982-exon-sc0000376-1491911889:101877..101904TCONS_00020982-exon-sc0000376-1491911889:101877..101904Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1510915933:101877..101904TCONS_00020982-exon-sc0000376-1510915933:101877..101904Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1575043694:101877..101904TCONS_00020982-exon-sc0000376-1575043694:101877..101904Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1491911889:102422..102629TCONS_00020982-exon-sc0000376-1491911889:102422..102629Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1510915933:102422..102629TCONS_00020982-exon-sc0000376-1510915933:102422..102629Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1575043694:102422..102629TCONS_00020982-exon-sc0000376-1575043694:102422..102629Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1491911889:103932..104081TCONS_00020982-exon-sc0000376-1491911889:103932..104081Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1510915933:103932..104081TCONS_00020982-exon-sc0000376-1510915933:103932..104081Clytia hemisphaericaexon
TCONS_00020982-exon-sc0000376-1575043694:103932..104081TCONS_00020982-exon-sc0000376-1575043694:103932..104081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:101877..104081 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.2112	8.19719	8.72035	5.28124	92.518	68.6969	35.0956	38.6666	16.7409	23.5974	15.5705	26.8909	2.13818	2.23947	2.77658	1.89682	1.35422	2.8367	1.92321	5.27877	2.84449	2.0813	4.59999	4.12196	14.5304	12.0536	10.6511	7.35894	3.5516	2.71241
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00020982 vs. Swiss-Prot (Human)
Match: KIF9 (Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 1.827e-26
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   79 QRHVQVFVRIKPTDKYAVKNIELSSDNKSLTIHAQEDNTTKCMNHQIADWQYSVDGILHNASQEEVYKKCTANQVTLALNGYNSTIFSYGQTGAGKTFTMTG 384
            ++ V  FVR+KPTD +A + I    D +S+ IH ++D     +N+Q  DW + +DG+LH+ASQ+ VY+    + V+ AL+GYN TI  YGQTGAGKT+TM G
Sbjct:    4 RKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 105
The following BLAST results are available for this feature:
BLAST of TCONS_00020982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF91.827e-2647.06Kinesin-like protein KIF9 OS=Homo sapiens GN=KIF9 ... [more]
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