TCONS_00020997 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020997
Unique Name	TCONS_00020997
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1451

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000376:47539..52098-

transcript sequence

>TCONS_00020997 ID=TCONS_00020997|Name=TCONS_00020997|organism=Clytia hemisphaerica|type=transcript|length=1451bp
tatagatTAAAGAACGAATTGAAATCGTTGAAAAAGAAAGGCATGGGATA
TCTTCGAGGTGCCGAGAACGATTTATCCAACTTCTCAAAATTCGTTCAAA
AAGCAGACACCATTTTGAAGAAGCTAAGAGTGAGTTCCTCAAAGTTGTCA
AGAGATTCAAACGATGGTATCTTTCAAGTCGAAGAGAAGCCAAAAGAAAG
TGAAGCAACGCTGTTGCCCTCTGCTAGATATCATCCCGAAACCATATTAC
AACATTGTCGATTCTTACTGCCTCTttccaaaaaacgtcaaaacttcgTT
AAAGAAATGTTACGTTCCACTGAACGCGCGGCACCTAGCGTCAAACCTAT
CATTCGCGTCGATCGAAGGGTGCCAGTCAACGAGAGATACAAACACGGTC
AACCGTCCACTGTTTTCATGCAGATTTTCTCgtcactcaaaaacaaagat
ttcTTACATTATCgATGGAATAAAAAATCGTACAGTCAATGGTGGGAAGT
GAAATTCTACGGCGAAGGGATCATTGACCAAGGTGGTGGATTCCGTGACA
GTCTAACAGAGATGTCTGAAGAACTTTGTCCTCCACTACTCGACCAAGAA
CACTGTCTTCCATTCCTTGTGAGAACACCCAATCACGTGACAAGGGTTGG
TGAACACATGGATTGTTTCACTTTGAACCCAAGTTGCCGAAACTTTGAAG
CTTACAAATGGCTTGGTCAATTATTCGGAGCATGTTTTCGAACTGGAGAG
ACGTTACCTTTATCTTTACCTCCGATGCTGTGGAAGATGTTGGTTGGTGA
ACACGTTTCTTGGAAAGACGATTTCATTCATATCGATGATGCTGCTGTCA
GAAATACCGACGGGCTTGCTAATTTGGAAGCAGACGCATACAAAGCATTG
AATGTGGAACAGACATACTCCACCATGCTCAGCAACCAAAAAGAAATCGA
ACTCCTCCCTGGTGGTTTCGATATGGTAGTGCAATGCGAAGACCGTACAA
AATATTCAGAAATGGTCCGAAAAGCACGGATGATGGAGAGTATAGAACAG
CTGAAAACATTACGAGGAGGTTTATTGACCGTCCTTCCAGAGCCCGTTCT
CTCCTGTTTAACTTGGAGTCGTCTTGAACGTGGTGTCTGTGGCAACCCAA
ACATCTCTGTGGCTGATCTCAAAGCAAATTGTCGTTATGGTGATGGTTTG
TCATCATCCTCACCAAGCGTCAACCACATGTGGGCCGCTCTTTCCACTTT
CACCGACGAAGAACGGAGCCGTTTCTTACGTTTCATCACCGGCCGAAAAC
GATTACCCAGTCCTTTCATCGTTTTCCGAGCATCGTCGGAAGGCGGTACA
CTTTCTCAGTCACTGAATTCAATCTTACCGAGCGCAAGTACCTGTGGTAG
TAATTTGTTCTTACCGGAATACACGACTGCTGAAATTGCGACTGAGAAAT
T

Run BLAST on NCBI

transcript from alignment at sc0000376:47539..52098-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020997 ID=TCONS_00020997|Name=TCONS_00020997|organism=Clytia hemisphaerica|type=transcript|length=4560bp|location=Sequence derived from alignment at sc0000376:47539..52098- (Clytia hemisphaerica)
TATAGATTAAAGAACGAATTGAAATCGTTGAAAAAGAAAGGCATGGGATA
TCTTCGAGGTGCCGAGAACGATTTATCCAACTTCTCAAAATTCGTTCAAA
AAGCAGACACCATTTTGAAGAAGCTAAGAGTGAGTTCCTCAAAGTTGTCA
AGAGATTCAAACGATGGTATCTTTCAAGTCGAAGAGAAGCCAAAAGAAAG
TGAAGCAACGCTGTTGCCCTCTGCTAGGTATGTACGCGAGTTTGCGAGTT
ATGTATTTTGCACTTATGAGGACGGTGGAGTGACTGAAGCAATTTGGAAT
AACCCACAGTTTTGACCTGCAAAATCAAGGAACTGTGAAAGTGTCGTCGT
TTTCAACCAATTAGGATCTAGACAAATCAGAAGCAGACCGTCTCTGTCGC
TGAAATACACAGATACATAAACTCACTATAGAGTCTCTTCTTCTCTCAAA
AATGTTTCCCATGATTTATTAGCATCCGTTAACGTCTCCGTCTAACCAAT
AAATGAAACTTAAAAATTCTCATCCTGAAAATTTATAGACCATAACAACA
AGTCATTGTTAGCATTCTAAAGTCTTAACCTTTCAAGCCCGAAAGACGTA
TCTGATGCGTCTTGCATACGTTCCGAAAAACGTATCTGATACGTTTTGAA
GATGACCTTTATATAGAGATACGGTAAAACCGATTAAAAAATCGGAATCA
GCTTGAAATTTTCGATAAGAAACAATCGGGGTTTGTTTTGGTATGACGCA
ACATTTTTCAAAAATAGAAAAGGTTAGACCAAGAATTGTATTACCTAACT
ATAAAGGAACCTTCTAAAGAAATAAGTAAGTGTTTTAATTAATTTTTCAG
TTCTCTATAATTTTTTGAAGTTTTGCACCAAAAATGACTTTTTCGCGACA
TTGATTTTTCATATACCTTTTGTCTGGCTTCATAATTTCTGTCCAAAATT
GTTTGAAGTACTCAGTTAAACATATTTAGAAAGGGGAAAGGTAGGGCTTT
CCAAAAATATAAGGGTTCTTTTCTGAAGTTAATTTTTCAAAAAGTTATAA
CGGTTATCGTGAAAATTGCATTTTCATCAAAAAACGTTGCGCGCAGATGG
GCTGAAGATAGAAAAATGTTGCCCGTTGGAAAGGTTAAAGAAAATCTTCA
ATTTTAAGCCTGAAATGAGTATTTTCGTGAAAAAGGAAGATCGTAATCTA
TTTTAACTGTTATCTTTTCTCATAGATATCATCCCGAAACCATATTACAA
CATTGTCGATTCTTACTGCCTCTTTCCAAAAAACGTCAAAACTTCGTTAA
AGAAATGTTACGTTCCACTGAACGCGCGGCACCTAGCGTCAAACCTATCA
TTCGCGTCGATCGAAGGGTGCCAGTCAACGAGAGATACAAACACGGTCAA
CCGTCCACTGTTTTCATGCAGATTTTCTCGTCACTCAAAAACAAAGATTT
CTTACATTATCGGTATGTTTTTCTTTCTTGACTTTTGATTCCTCAACTTT
TTCTGTAATTGTTTTTTTAACAAGCACTTTTTGTTGACGAAGATATATCG
AAAGGAGTTTTTTTAATAACAAAGTTTGCCGAAAATCCATATCACTATCA
GGTGGTTACTAAAGATTAAAGCTCTATTTACATGTAAAATAATAGTTACC
TTTTCTGATTCAAACGCACAGATGGAATAAAAAATCGTACAGTCAATGGT
GGGAAGTGAAATTCTACGGCGAAGGGATCATTGACCAAGGTGGTGGATTC
CGTGACAGTCTAACAGAGATGTCTGAAGAACTTTGTCCTCCACTACTCGA
CCAAGAACACTGTCTTCCATTCCTTGTGAGAACACCCAATCACGTGACAA
GGGTTGGTGAACACATGGATTGTTTCACTTTGAACCCAAGTTGCCGAAAC
TTTGAAGCTTACAAATGGTGGGTTGTTGCCTGACGAAAATCATTTCTTAT
CCGTGTGTTTCATATTAAACAGGGCATATTATAGAAAAATAACTTGAGTT
TCTATAGATAATCTATCTATTCCTTGCACATGCCCTTACTAGAATTGATG
TAAAATGTAAAATGAAAAATTTTGATAGAAACTTTTTTTAAGTTCTTTGC
GGTAAGCTGTTTGAAAGTATTATGAATGTTTATCTTTTGTCAGGCTTGGT
CAATTATTCGGAGCATGTTTTCGAACTGGAGAGACGTTACCTTTATCTTT
ACCTCCGATGCTGTGGAAGATGTTGGTTGGTGAACACGTTTCTTGGAAAG
ACGATTTCATTCATATCGATGATGCTGCTGTCAGAAATACCGGTGAGTAA
CAAAGGATCTTTTCATGTCTCCAACTACTTTTTTCTATTCAAAATTTTAT
TAAGTTTTTTTTTTTTGAAAAATCCAACCCGTGCCTTTTTAATGTTTAAT
GCTTAAGGTCAAATCTCTTGGGTTCAATTTCGTTGGTCATTATTTTGAAT
TATTTCGTGTCTATTTAATTCCGCGAGCAGACTTGAAAATTGTCGTTTTC
TGCCAATAAATAGAGGATTTAGACTTTTTTTTCGCCGAAGAATGTGTGAA
ATGTCCCGGACATATTTCGCTTGAATTCAATTGTGCGATACGGCGAAGGG
GAGTTTTTGCGCATAGTTTATCCGATCTTAAAAGCAAAAGACAAACACCA
TTGATACGCTGAATTAGCCTGTACCAAACTCTTCTTCTTCAAAACATGTT
GGTCTTTTCGTTTGCAGACGGGCTTGCTAATTTGGAAGCAGACGCATACA
AAGCATTGAATGTGGAACAGACATACTCCACCATGCTCAGCAACCAAAAA
GAAATCGAACTCCTCCCTGGTGGTTTCGATATGGTAGTGCAATGCGAAGA
CCGTACAAAATATTCAGAAATGGTCCGAAAAGCACGGATGATGGAGAGTA
TAGAACAGGTGATTACACCGATGTGTCTTTTTGAAAAAGCTTTTTCAGTA
TTATTCGGTTTTGAAATTGTTTTCAATTGTTTGATGACCAAAAATAGCCT
GGGGTTGATGGCTCGTCTTAATATCCTTAACTTAGTGGAAATTGAAAATT
TTGAATATAGATACACGTTTTTTTTTTATTAGAACACCTAAAATTTGGCT
GAGCCTGGATGTGCTTATTTTTTTAGCAATTTTCAGCCTAAAATGTTCTT
AAATGCGTTCTTAATTTTTCAGACTACTCTAAATCGACAATATGAGACAA
AATAAAGAGCACTTAAATTTGACAAAATTTGGACAATATTTGGCTCTTGA
CTTTAGAAGATCCACCCCTAAATTTGGTTAAAACTGCTTAAAAAGAGGAA
AAAATTGTAGTTTCTTGTCATTTTTTTCCAAACTGAGGCTGGGCATGTTC
TTAAGATGTTCTTAATTTTTCGACGAATTTCAGCCTATATGTTCTTATAA
ACTAGGTTCTAATAAAAAAAAAAACGTGTAATACTGTGCTAAAAGTACTT
TCGTCTCAGCGAAGTCTACAAAGAGGTTCTTCCGTCTCAAGATTCTGTAT
AATTCACAATAATTTCAAGAACATGTGCTATTGACAGTTTAAAATCCACT
TTCGTCTCAGACGAAAATCACAGTGTGAAAAAAAAAACATGTTTGCATTT
ATAAGCCTACTGACTAAACGATTCTTCTTTCTATCTTTCAGCTGAAAACA
TTACGAGGAGGTTTATTGACCGTCCTTCCAGAGCCCGTTCTCTCCTGTTT
AACTTGGAGTCGTCTTGAACGTGGTGTCTGTGGCAACCCAAACATCTCTG
TGGCTGATCTCAAAGCAAATTGTAAGAAATTTCACATGATGTCTGACTTT
AGTTGACTTTCTATATCTCGAACGTCAAGATTTTCTTCGAATTTAGAGAC
GAAACTTGTCAGCTTTGTAATGTTTGCTATTCAAACAATATATTGTAGTA
GTCATTGATATTGAGATGGATATTTGAAGGCATTTTATCGCTAATAGTCT
ATTTAACGATATGGAGTTTTGACGGACGCAAATTAGCCTCAATTGTTATT
AGCTGTTGTTTTCATTGGCTTTGTCCAGTATTTCATTATATATCATTTTC
ATTGTTTTGTAGGTCGTTATGGTGATGGTTTGTCATCATCCTCACCAAGC
GTCAACCACATGTGGGCCGCTCTTTCCACTTTCACCGACGAAGAACGGAG
CCGTTTCTTACGTTTCATCACCGGCCGAAAACGATTACCCAGTCCTTTCA
TCGTTTTCCGAGCATCGTCGGAAGGCGGTACACTTTCTCAGTCACTGAAT
TCAATCTTACCGAGCGCAAGTACCTGTGGTAGTAATTTGTTCTTACCGGA
ATACACGACTGCTGAAATTGCGACTGAGAAATTAAGGTGGGAAATATAAT
TCATTGTATGATTCTAATAGATTACTATGAATATGAGTACTGATCCCTCG
GATTAAAATTTGCAAAAGACTAAGATATCCCGTTACTGAGGTTTTGTAAT
CAAGAAGACACAGTTTATTAAGCGATTATTTTGACATCTTAAATTGACTT
CGTATAGGCCTGTACAAAGCCAGTCAAAGATTGCATGGTAATATTCGATT
TTCTCACATT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011776	XLOC_011776	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000376	supercontig	sc0000376:47539..52098 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.13835	7.75389	2.35722	1.67492	13.1196	8.50267	11.7265	13.6176	8.77702	10.9516	7.91941	6.01398	10.3393	8.4493	7.96144	11.8336	11.996	14.5045	6.28959	6.05225	6.99711	7.68105	14.4582	17.435	12.831	11.6531	7.4594	6.52501	14.5564	15.1985

Blast

[Close]

BLAST of TCONS_00020997 vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 5.129e-104
Identity = 177/411 (43.07%), Postives = 247/411 (60.10%), Query Frame = 1

Query:  244 ILQHCRFLLPLSKKRQNFVKEMLRSTERAAPSVKPIIRVDRRVPVNERYKHGQ----PSTVFMQIFSSLKNKDF----LHYRWNKKSYSQWWEVKFYGEGIIDQGGGFRDSLTEMSEELCPPLLDQEHCLPFLVRTPNHVTRVGEHMDCFTLNPSCRNFEAYKWLGQLFGACFRTGETLPLSLPPMLWKMLVGEHVSWKDDFIHIDDAAVRNTDGLANLEADAYK-ALNVEQTYSTMLSNQKEIELLPGGFDMVVQCEDRTKYSEMVRKARMMESIEQLKTLRGGLLTVLPEPVLSCLTWSRLERGVCGNPNISVADLKANCRYGDGLSSSSPSVNHMWAALSTFTDEERSRFLRFITGRKRLPSPFIVFRASSEGGTLSQSLNSILPSASTCGSNLFLPEYTTAEIATEK 1449
            I Q  +FLL LS++R   V + LR +E + PS  P + ++RR+ +  R    +     + VF Q++  LK  D     L YRW  + Y QWWE KF  EGIIDQGGGFRDSL +MSEELCP   D    LPF VRT N     GE  D +  NPSCR+F  Y+W+GQL GA  R  E L L+LP  +WK L GE VSW  DF  +D   V+  + +  ++ + ++     E T++T+LS+Q+ +EL+PGG  +VV   DR+++ ++V+KAR+ ES EQ+  ++ GLL V+P+ VL  LTW  LE+ VCG+P ++V  L+   R+ D    S   V + W AL+ FT+E+RSRFLRF+TGR RLP+   ++        L       LP +STC S LFLP Y +A++  EK
Sbjct:  439 IKQVKQFLL-LSRQRPGLVAQCLRDSESSKPSFMPRLYINRRLAMEHRACPSRDPACKNAVFTQVYEGLKPSDKYEKPLDYRWPMR-YDQWWECKFIAEGIIDQGGGFRDSLADMSEELCPSSADTPVPLPFFVRTANQGNGTGEARDMYVPNPSCRDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGEEVSWSKDFPAVDSVLVKLLEVMEGMDKETFEFKFGKELTFTTVLSDQQVVELIPGGAGIVVGYGDRSRFIQLVQKARLEESKEQVAAMQAGLLKVVPQAVLDLLTWQELEKKVCGDPEVTVDALRKLTRFED-FEPSDSRVQYFWEALNNFTNEDRSRFLRFVTGRSRLPARIYIY-----PDKLGYETTDALPESSTCSSTLFLPHYASAKVCEEK 841

The following BLAST results are available for this feature:

BLAST of TCONS_00020997 vs. Swiss-Prot (Human)

BLAST of TCONS_00020997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HECD3	5.129e-104	43.07	E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens...	[more]

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TCONS_00020997 (transcript) - C. hemisphaerica