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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021008 ID=TCONS_00021008|Name=TCONS_00021008|organism=Clytia hemisphaerica|type=transcript|length=2351bpRun BLAST on NCBI protein sequence of TCONS_00021008-protein >TCONS_00021008-protein ID=TCONS_00021008-protein|Name=TCONS_00021008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp TRLKEDVNSARRFAEELQKTNKQTKAELDQYIRTSKAQDAEVDNLRTENRRun BLAST on NCBI transcript from alignment at sc0000376:150585..190367- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021008 ID=TCONS_00021008|Name=TCONS_00021008|organism=Clytia hemisphaerica|type=transcript|length=39783bp|location=Sequence derived from alignment at sc0000376:150585..190367- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000376:150585..190367- >TCONS_00021008 ID=TCONS_00021008|Name=TCONS_00021008|organism=Clytia hemisphaerica|type=CDS|length=31464bp|location=Sequence derived from alignment at sc0000376:150585..190367- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021008 vs. Swiss-Prot (Human)
Match: SCLT1 (Sodium channel and clathrin linker 1 OS=Homo sapiens GN=SCLT1 PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 1.621e-43 Identity = 145/488 (29.71%), Postives = 275/488 (56.35%), Query Frame = 1
Query: 37 FAEELQKTNKQTKAELDQYIRTSKAQDAEVDNLRTENRRIQAELKTSKTLNGELQSHNNKMQDQMRYLDKDNLSNTITEKSAEGAIRKLQNEIVELDSRVMSHSKEMSKLRCEKNELEEQVTSLQKKNSILEDNEHQAVLRVRDSVQMVENALLEREQAVVREQQKSHEVLRLQEAITNLMKQADEQRKKEVANVKSQMNKQLQQLLADIQDFELEAAEKQVLYEKLQREKGAIEKELEKMYIVGPEEVTKSGQVFDELHRRIASIELSRDEHILKVEQMEAAMRRNQSKFDNESTVYLSQIAEYKKQVKNLKNDMEQ-------ISESRLTLLDEVNGLRKEL--LNKCEDNATLDITCASQVSSIQQKLDLKEKEFENRLRACEESHRESLNDLREMLADQQKTHSKYREETRTINQNQENTITQLRQESKHMKRRNNDLKNAYNEVQHKYEQMEKEYLGCHTSLEKMQDLYSESEERADTANTQV 1473
++L TN+ + Q+++T Q ++ LR + R+ + EL+ + EL + +Q QM+ +KD +S E++++ +++LQ+ I +L+ R+ +E ++LR E LE+Q LQ K + LE+ ++A++R R+S+Q++E A L++ QA++ E+QK ++ +++E ++ ++ A + KKEVAN K Q N Q+ +L ++ ++E AEKQ E++ +EK A+E+ELEK+Y G + ++ +E+H+R E S+D+ L++ + E ++ + + +S+ +I+ Y++ ++ L+N +E +SE RL L E LRKE L K A ++S+++ + +KE+ FE +LR E+S+R S+ +LR +LA QQK ++++EET+ + ++ E I L+ E K +L + K + EK L ++Q S++EERA +A+ Q+
Sbjct: 192 LTKQLHVTNENMEVTNQQFLKTVTEQSVIIEQLRKKLRQAKLELRVAVAKVEELTNVTEDLQGQMKKKEKDVVSAHGREEASDRRLQQLQSSIKQLEIRLCVTIQEANQLRTENTHLEKQTRELQAKCNELENERYEAIVRARNSMQLLEEANLQKSQALLEEKQKEEDIEKMKETVSRFVQDATIRTKKEVANTKKQCNIQISRLTEELSALQMECAEKQGQIERVIKEKKAVEEELEKIYREGRGNESDYRKL-EEMHQRFLVSERSKDDLQLRLTRAENRIK----QLETDSS---EEISRYQEMIQKLQNVLESERENCGLVSEQRLKLQQENKQLRKETESLRKIALEA--QKKAKVKISTMEHEFSIKERGFEVQLREMEDSNRNSIVELRHLLATQQKAANRWKEETKKLTESAEIRINNLKSELSRQKLHTQELLSQLEMANEKVAENEKLILEHQEKANRLQRRLSQAEERAASASQQL 669 The following BLAST results are available for this feature:
BLAST of TCONS_00021008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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