TCONS_00021012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021012
Unique NameTCONS_00021012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021012 ID=TCONS_00021012|Name=TCONS_00021012|organism=Clytia hemisphaerica|type=transcript|length=860bp
AGTTTCCAAATATGCGGGTCGTTCGACAAATCACAGACTTCAAACGACCC
GCAAATTTCGATGCATCGTAAGCAAAGCCGAATCGAATAttctggtcatt
aaaattaaaatttgattgtGGTGGATTTCGAATTCGTATCTTTGCGGGgg
atttctttaaaaacaggGCGGAGTATCTGCCTTGCTCATCACAAACTCGC
TGGAAGGCATTCATTTTCGTGTCGAAGGGCTGAAACAAGCTCAAAAAGTC
TTATGATTTTGGAAGTATAAATAGATCTGGTTTATTCGAATTGAAGCCAA
ACTTACCAAAGGAATTGTCGTCGAAATTTGgaataatttttgttattttt
tatttgaatattaGAAATTAAATcatcgccaaaaaataaaaatgcaagCA
ATCAAATGTGTCGTTGTTGGCGATGGGTAAGTTGAGTATTTTGAATCTGA
TTCCGTTTTCATAACCTTAACCTGTACTTCATTATAGCTAGATTgacttt
tgaaagttttatgTACTATAGTTTTAATTCACATTTGAATTTCCAAGTAC
GACATGATTTCAATTGATGCACAGTTATCTAAAATGCTGGCATCATTTTT
TGAAGCCTGTTGTGTGTTATCCTAGTCTCGGCTAGTCTTGGGAAGCCATG
TCATGTGAGGAGAATTTTTTTGGAAGTCAGTCCTAGAGTTGTTAACAAGA
CCTTTGATTCTTTTAACATGTTGCAGAGGACGATCAAATAGCTTGATAAT
TTGGCCACCTCACATCCTTAagcagtcgggtgtttaagataaaaactgca
attattgctcttttcggaaattattgccgaaaacggcaatttttttaacg
atgaaatgct
Run BLAST on NCBI

transcript from alignment at sc0000376:1..860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021012 ID=TCONS_00021012|Name=TCONS_00021012|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at sc0000376:1..860 (Clytia hemisphaerica)
agcatttcatcgttaaaaaaattgccgttttcggcaataatttccgaaaa
gagcaataattgcagtttttatcttaaacacccgactgctTAAGGATGTG
AGGTGGCCAAATTATCAAGCTATTTGATCGTCCTCTGCAACATGTTAAAA
GAATCAAAGGTCTTGTTAACAACTCTAGGACTGACTTCCAAAAAAATTCT
CCTCACATGACATGGCTTCCCAAGACTAGCCGAGACTAGGATAACACACA
ACAGGCTTCAAAAAATGATGCCAGCATTTTAGATAACTGTGCATCAATTG
AAATCATGTCGTACTTGGAAATTCAAATGTGAATTAAAACTATAGTAcat
aaaactttcaaaagtcAATCTAGCTATAATGAAGTACAGGTTAAGGTTAT
GAAAACGGAATCAGATTCAAAATACTCAACTTACCCATCGCCAACAACGA
CACATTTGATTGcttgcatttttattttttggcgatgATTTAATTTCtaa
tattcaaataaaaaataacaaaaattattcCAAATTTCGACGACAATTCC
TTTGGTAAGTTTGGCTTCAATTCGAATAAACCAGATCTATTTATACTTCC
AAAATCATAAGACTTTTTGAGCTTGTTTCAGCCCTTCGACACGAAAATGA
ATGCCTTCCAGCGAGTTTGTGATGAGCAAGGCAGATACTCCGCcctgttt
ttaaagaaatccCCCGCAAAGATACGAATTCGAAATCCACCacaatcaaa
ttttaattttaatgaccagaaTATTCGATTCGGCTTTGCTTACGATGCAT
CGAAATTTGCGGGTCGTTTGAAGTCTGTGATTTGTCGAACGACCCGCATA
TTTGGAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011783XLOC_011783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021012-exon-sc0000376-1491911889:1..860TCONS_00021012-exon-sc0000376-1491911889:1..860Clytia hemisphaericaexon
TCONS_00021012-exon-sc0000376-1510915933:1..860TCONS_00021012-exon-sc0000376-1510915933:1..860Clytia hemisphaericaexon
TCONS_00021012-exon-sc0000376-1575043694:1..860TCONS_00021012-exon-sc0000376-1575043694:1..860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:1..860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.113	114.807	137.89	142.05	65.5792	40.7317	48.6576	52.2449	78.5364	87.1622	105.436	72.919	85.7626	74.8875	73.6047	64.8209	72.2713	80.6365	117.992	105.926	151.553	137.352	87.6056	113.012	21.4454	31.0572	99.05	98.7216	98.6375	101.066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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