TCONS_00021017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021017
Unique NameTCONS_00021017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021017 ID=TCONS_00021017|Name=TCONS_00021017|organism=Clytia hemisphaerica|type=transcript|length=670bp
GTGTATTATAATAAATCTGAGCTATATTTTTTGTGGATACTTACCTAATG
TATTCTGACTCGGAAAGCAATATATATTTGAGCTACTAAGAATATGAAAG
CAGTGGAAATGAGGCAGATTCTGAGAGAGAAGATGGAGTAAGCAAGAGAG
ATATGGATCACCTCAAATTAATAAGCTGAAAAAATTTAACCCATATCTCT
ATGAGCCTGAACGAGAAGTATCGAGTACAAGCGAGAGTGACCGAAGACGA
AAGTGACTATGAAACTTGTTCTGAAGGTAGAAGCTGCAGTTTAGATTGGT
GTGAGTGTGAGGGCTGCCAAATCGAAACAAGAGAAATTGATTGTTTGTGT
TGTAATGAAGTCGCAGCcctaaatgaaaaatttgatcagGGAGACTTTCA
GTGCATTATTGACTCACCACAATTCCCAAAAATGTGCCTTGACGAGACAA
ACAGAGATCTTTTGGAAGAGATACCGTCGAATAGATCCCTAAGATATGCA
GCATACAGGAAATTTTCTTGGTGGGTTTTCAAGAGATTGGGAAAAAACAA
TCGCCGAGTAATCCCATCATGTGTGCTTTCAAAGATTCGAAGTACCTTCC
CTGACCCTGAAGGAAAATATACCAAATATAAGGAAGGTGAAAAAGACTAG
GGCTAATAATTTTGTTAACC
Run BLAST on NCBI

protein sequence of TCONS_00021017-protein

>TCONS_00021017-protein ID=TCONS_00021017-protein|Name=TCONS_00021017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MSLNEKYRVQARVTEDESDYETCSEGRSCSLDWCECEGCQIETREIDCLC
CNEVAALNEKFDQGDFQCIIDSPQFPKMCLDETNRDLLEEIPSNRSLRYA
AYRKFSWWVFKRLGKNNRRVIPSCVLSKIRSTFPDPEGKYTKYKEGEKD
Run BLAST on NCBI

transcript from alignment at sc0000376:67080..67749

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021017 ID=TCONS_00021017|Name=TCONS_00021017|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0000376:67080..67749 (Clytia hemisphaerica)
GGTTAACAAAATTATTAGCCCTAGTCTTTTTCACCTTCCTTATATTTGGT
ATATTTTCCTTCAGGGTCAGGGAAGGTACTTCGAATCTTTGAAAGCACAC
ATGATGGGATTACTCGGCGATTGTTTTTTCCCAATCTCTTGAAAACCCAC
CAAGAAAATTTCCTGTATGCTGCATATCTTAGGGATCTATTCGACGGTAT
CTCTTCCAAAAGATCTCTGTTTGTCTCGTCAAGGCACATTTTTGGGAATT
GTGGTGAGTCAATAATGCACTGAAAGTCTCCctgatcaaatttttcattt
aggGCTGCGACTTCATTACAACACAAACAATCAATTTCTCTTGTTTCGAT
TTGGCAGCCCTCACACTCACACCAATCTAAACTGCAGCTTCTACCTTCAG
AACAAGTTTCATAGTCACTTTCGTCTTCGGTCACTCTCGCTTGTACTCGA
TACTTCTCGTTCAGGCTCATAGAGATATGGGTTAAATTTTTTCAGCTTAT
TAATTTGAGGTGATCCATATCTCTCTTGCTTACTCCATCTTCTCTCTCAG
AATCTGCCTCATTTCCACTGCTTTCATATTCTTAGTAGCTCAAATATATA
TTGCTTTCCGAGTCAGAATACATTAGGTAAGTATCCACAAAAAATATAGC
TCAGATTTATTATAATACAC

Coding sequence (CDS) from alignment at sc0000376:67080..67749

>TCONS_00021017 ID=TCONS_00021017|Name=TCONS_00021017|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at sc0000376:67080..67749 (Clytia hemisphaerica)
CTAGTCTTTTTCACCTTCCTTATATTTGGTATATTTTCCTTCAGGGTCAG
GGAAGGTACTTCGAATCTTTGAAAGCACACATGATGGGATTACTCGGCGA
TTGTTTTTTCCCAATCTCTTGAAAACCCACCAAGAAAATTTCCTGTATGC
TGCATATCTTAGGGATCTATTCGACGGTATCTCTTCCAAAAGATCTCTGT
TTGTCTCGTCAAGGCACATTTTTGGGAATTGTGGTGAGTCAATAATGCAC
TGAAAGTCTCCctgatcaaatttttcatttaggGCTGCGACTTCATTACA
ACACAAACAATCAATTTCTCTTGTTTCGATTTGGCAGCCCTCACACTCAC
ACCAATCTAAACTGCAGCTTCTACCTTCAGAACAAGTTTCATAGTCACTT
TCGTCTTCGGTCACTCTCGCTTGTACTCGATACTTCTCGTTCAGGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011788XLOC_011788Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021017-proteinTCONS_00021017-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021017-exon-sc0000376-1491911889:67080..67749TCONS_00021017-exon-sc0000376-1491911889:67080..67749Clytia hemisphaericaexon
TCONS_00021017-exon-sc0000376-1510915933:67080..67749TCONS_00021017-exon-sc0000376-1510915933:67080..67749Clytia hemisphaericaexon
TCONS_00021017-exon-sc0000376-1575043694:67080..67749TCONS_00021017-exon-sc0000376-1575043694:67080..67749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:67080..67749 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0769582	0.225139	0.220548	0.558872	0.646479	1.06613	0.889662	0.926282	0.175043	0.115244	0.504553	0.32743	0.39338	0.159461	0.305896	0.515858	0.388364	0.635633	0	0.171213	0.555848	0.10888	0.0882388	0.320887	0.165253	0.589938	0.21105	0.225238	0.458452	0.0870271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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