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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021024 ID=TCONS_00021024|Name=TCONS_00021024|organism=Clytia hemisphaerica|type=transcript|length=844bp
ACAAAGAGTTCTAGCAAATCTCGCCAATGCTTTGCACAAATCAGTAGACT
CTTGACCATATTGTTTGGATGTCAGCAATCTCTTCCAGCCATCTCCATCC
ATTCCAGAGGGTCCAGAGCCACCTTTAGTTCTTGCTGCTGCTTGACGAAT
TGCATCAGCATCGATTTCTTCAAAGATAACAGGATGGACTTCGATTGGTT
TGTCTGTTAAGAGAACATCGTCTTCAGCTTGTTGTGGCTCAGGATGTTTC
TGACGAAGTATCTCCAGTGTCTCATCATTCAAAGGGACGATACCATCGAC
CATGTTATCACTTAGAAGTTTGATGGCACCATTGACATTGCCCTTTGACA
TCCGCTCAATGAATTTTTTCGATGTTGATTTTATCGAACTCACAGtcttt
tttggcgattttaGACGATCTTGAATCGTTGATCCTTCTTTAAGAAGATC
AAGGATGAATCCTTCACTCCATTGTTTCATTCTTCTTTCCAGTGCTGCTT
TGTGGTCTTTCGACTTCGACTTTTTGGATGGCTTTTGAAGGAGAAGCGCT
GGCATTATCATGATGGTCTTTAGGGCGATACTTTTCAGTGGTGAGTTCTC
TACCCATGCATTGATCAGCCTGGTTAATTCGTGGATGTATTGTTTACCAG
CAGCACCTTTTGGAAGaagaaatatgtttttcttcCAGTATACAATCTTC
TCGTACGAATGGTTCACCTTTTTTACAAATGAATCACCATCACAACTTCC
CCATTTGAAATCGTAAGGCTTCACTGGATCTGGCACAGATGGTGGTGGAT
CAGGAGGTTTTGGGGGCAGCTTGTTGGTATCTGTTGTGGTTTGT Run BLAST on NCBI protein sequence of TCONS_00021024-protein >TCONS_00021024-protein ID=TCONS_00021024-protein|Name=TCONS_00021024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
QTTTDTNKLPPKPPDPPPSVPDPVKPYDFKWGSCDGDSFVKKVNHSYEKI
VYWKKNIFLLPKGAAGKQYIHELTRLINAWVENSPLKSIALKTIMIMPAL
LLQKPSKKSKSKDHKAALERRMKQWSEGFILDLLKEGSTIQDRLKSPKKT
VSSIKSTSKKFIERMSKGNVNGAIKLLSDNMVDGIVPLNDETLEILRQKH
PEPQQAEDDVLLTDKPIEVHPVIFEEIDADAIRQAAARTKGGSGPSGMDG
DGWKRLLTSKQYGQESTDLCKALARFARTLC Run BLAST on NCBI transcript from alignment at sc0000376:220486..221329 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021024 ID=TCONS_00021024|Name=TCONS_00021024|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000376:220486..221329 (Clytia hemisphaerica)
ACAAACCACAACAGATACCAACAAGCTGCCCCCAAAACCTCCTGATCCAC
CACCATCTGTGCCAGATCCAGTGAAGCCTTACGATTTCAAATGGGGAAGT
TGTGATGGTGATTCATTTGTAAAAAAGGTGAACCATTCGTACGAGAAGAT
TGTATACTGgaagaaaaacatatttcttCTTCCAAAAGGTGCTGCTGGTA
AACAATACATCCACGAATTAACCAGGCTGATCAATGCATGGGTAGAGAAC
TCACCACTGAAAAGTATCGCCCTAAAGACCATCATGATAATGCCAGCGCT
TCTCCTTCAAAAGCCATCCAAAAAGTCGAAGTCGAAAGACCACAAAGCAG
CACTGGAAAGAAGAATGAAACAATGGAGTGAAGGATTCATCCTTGATCTT
CTTAAAGAAGGATCAACGATTCAAGATCGTCtaaaatcgccaaaaaagaC
TGTGAGTTCGATAAAATCAACATCGAAAAAATTCATTGAGCGGATGTCAA
AGGGCAATGTCAATGGTGCCATCAAACTTCTAAGTGATAACATGGTCGAT
GGTATCGTCCCTTTGAATGATGAGACACTGGAGATACTTCGTCAGAAACA
TCCTGAGCCACAACAAGCTGAAGACGATGTTCTCTTAACAGACAAACCAA
TCGAAGTCCATCCTGTTATCTTTGAAGAAATCGATGCTGATGCAATTCGT
CAAGCAGCAGCAAGAACTAAAGGTGGCTCTGGACCCTCTGGAATGGATGG
AGATGGCTGGAAGAGATTGCTGACATCCAAACAATATGGTCAAGAGTCTA
CTGATTTGTGCAAAGCATTGGCGAGATTTGCTAGAACTCTTTGT Coding sequence (CDS) from alignment at sc0000376:220486..221329 >TCONS_00021024 ID=TCONS_00021024|Name=TCONS_00021024|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at sc0000376:220486..221329 (Clytia hemisphaerica)
CAAACCACAACAGATACCAACAAGCTGCCCCCAAAACCTCCTGATCCACC
ACCATCTGTGCCAGATCCAGTGAAGCCTTACGATTTCAAATGGGGAAGTT
GTGATGGTGATTCATTTGTAAAAAAGGTGAACCATTCGTACGAGAAGATT
GTATACTGgaagaaaaacatatttcttCTTCCAAAAGGTGCTGCTGGTAA
ACAATACATCCACGAATTAACCAGGCTGATCAATGCATGGGTAGAGAACT
CACCACTGAAAAGTATCGCCCTAAAGACCATCATGATAATGCCAGCGCTT
CTCCTTCAAAAGCCATCCAAAAAGTCGAAGTCGAAAGACCACAAAGCAGC
ACTGGAAAGAAGAATGAAACAATGGAGTGAAGGATTCATCCTTGATCTTC
TTAAAGAAGGATCAACGATTCAAGATCGTCtaaaatcgccaaaaaagaCT
GTGAGTTCGATAAAATCAACATCGAAAAAATTCATTGAGCGGATGTCAAA
GGGCAATGTCAATGGTGCCATCAAACTTCTAAGTGATAACATGGTCGATG
GTATCGTCCCTTTGAATGATGAGACACTGGAGATACTTCGTCAGAAACAT
CCTGAGCCACAACAAGCTGAAGACGATGTTCTCTTAACAGACAAACCAAT
CGAAGTCCATCCTGTTATCTTTGAAGAAATCGATGCTGATGCAATTCGTC
AAGCAGCAGCAAGAACTAAAGGTGGCTCTGGACCCTCTGGAATGGATGGA
GATGGCTGGAAGAGATTGCTGACATCCAAACAATATGGTCAAGAGTCTAC
TGATTTGTGCAAAGCATTGGCGAGATTTGCTAGAACTCTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021024-exon-sc0000376-1491911889:220486..221329 | TCONS_00021024-exon-sc0000376-1491911889:220486..221329 | Clytia hemisphaerica | exon |
| TCONS_00021024-exon-sc0000376-1510915933:220486..221329 | TCONS_00021024-exon-sc0000376-1510915933:220486..221329 | Clytia hemisphaerica | exon |
| TCONS_00021024-exon-sc0000376-1575043694:220486..221329 | TCONS_00021024-exon-sc0000376-1575043694:220486..221329 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000376 | supercontig | sc0000376:220486..221329 . |
Blast
The following BLAST results are available for this feature:
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