TCONS_00021025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021025
Unique NameTCONS_00021025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021025 ID=TCONS_00021025|Name=TCONS_00021025|organism=Clytia hemisphaerica|type=transcript|length=218bp
CCACCTGTTGTTGTTGGTTCTGTCCAAATTCCATCCCCGTTCCTACACCC
CTTACTTGCCTCCCCTTTTGTTAGGCCTCAGCTATTTTCTTTGTGTGTAT
TGTTATTAATACTTATTATGAATTGTATGTAAGAGTGAtataagatttta
aaaatataggaAAATTATTCAGAGAGtgtaaaaagtttaattaagaAGCA
TCGTAAATTTTACACGAA
Run BLAST on NCBI

transcript from alignment at sc0000376:241200..241417

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021025 ID=TCONS_00021025|Name=TCONS_00021025|organism=Clytia hemisphaerica|type=transcript|length=218bp|location=Sequence derived from alignment at sc0000376:241200..241417 (Clytia hemisphaerica)
TTCGTGTAAAATTTACGATGCTtcttaattaaactttttacaCTCTCTGA
ATAATTTtcctatatttttaaaatcttataTCACTCTTACATACAATTCA
TAATAAGTATTAATAACAATACACACAAAGAAAATAGCTGAGGCCTAACA
AAAGGGGAGGCAAGTAAGGGGTGTAGGAACGGGGATGGAATTTGGACAGA
ACCAACAACAACAGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011796XLOC_011796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021025-exon-sc0000376-1491911889:241200..241417TCONS_00021025-exon-sc0000376-1491911889:241200..241417Clytia hemisphaericaexon
TCONS_00021025-exon-sc0000376-1510915933:241200..241417TCONS_00021025-exon-sc0000376-1510915933:241200..241417Clytia hemisphaericaexon
TCONS_00021025-exon-sc0000376-1575043694:241200..241417TCONS_00021025-exon-sc0000376-1575043694:241200..241417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:241200..241417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27611	1.24441	0	0	56.7901	33.9972	26.2503	32.255	17.2057	19.98	11.6359	19.5474	11.8819	14.1022	8.69544	5.4434	8.62177	16.6922	16.2785	12.7757	18.5073	21.6653	8.77901	7.98139	0	3.66836	13.9984	22.4093	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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