TCONS_00021026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021026
Unique NameTCONS_00021026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021026 ID=TCONS_00021026|Name=TCONS_00021026|organism=Clytia hemisphaerica|type=transcript|length=852bp
TTCAAGATTTAGATACACTTAGTTTTGATTTTGTCAAGTTATGATTAGTT
CAGAATATTACGGGCCTTTAGGACTAACTCAAGTAAGAATTGTCAAGACT
ATTTTCATCAGAGCTAAGAGAAGGATGTGAGAAAGGATCACGTCAGTTGA
GATTCGATAGGCTTTTTTATAGAAGACACCTTTGAATCAAAATGAATGAA
GCAATCTTCGATCTACCGACAATCCAACTTATGTTTTATTCAGAATAACA
ACACGGAGCGCTTTCTGTAGTAGGCGAGACAGGAAAAATAAAGAAAAGAA
TACGTCGGTTTTTCACTTTCTTAAATTTTTATCAAATAAAGGAAAGAACA
GATTTCTCCTAGCCCAGTGGATAATGTAATTTTTAGATGCCGACAAAAAA
ACCAACACCCAGATGTTGTCTATGAATGGAACAAAAGAATTAACCTCACA
GATCTCGTCTACTATTTGAGAAAAACTCACTCTGTGAGACGGTCAACCAA
GCGTGTGTCTATTTATGACTTTCCTCTTTATTGTGGTCTCAATCAAAAGT
AACCTTTTTCTATTTGCTTTGATCACTGCCATTTACTTTTCGTTGAAAAA
GTGTTGTATGCAAGCCAGGTCAACAATTTTATGTGACAAGGAGATGAGTA
GAAGAGGTTAGGTACTATGTACTATGAAGTTTTATCACGGGGGGGGGGCA
GTCAGGCAAATTGACCGACGGGTATGTGCGGCGGTTAAGGGGATGTTTTT
CAAAATATCAGAAATGCATTGTAAGGGTGGACTTTTGATAAATGCACTgt
aagggtggaaatttcagcaaatctgggaaaaattgcaaatttttgctcga
aa
Run BLAST on NCBI

transcript from alignment at sc0000376:264858..265709

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021026 ID=TCONS_00021026|Name=TCONS_00021026|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at sc0000376:264858..265709 (Clytia hemisphaerica)
tttcgagcaaaaatttgcaatttttcccagatttgctgaaatttccaccc
ttacAGTGCATTTATCAAAAGTCCACCCTTACAATGCATTTCTGATATTT
TGAAAAACATCCCCTTAACCGCCGCACATACCCGTCGGTCAATTTGCCTG
ACTGCCCCCCCCCCGTGATAAAACTTCATAGTACATAGTACCTAACCTCT
TCTACTCATCTCCTTGTCACATAAAATTGTTGACCTGGCTTGCATACAAC
ACTTTTTCAACGAAAAGTAAATGGCAGTGATCAAAGCAAATAGAAAAAGG
TTACTTTTGATTGAGACCACAATAAAGAGGAAAGTCATAAATAGACACAC
GCTTGGTTGACCGTCTCACAGAGTGAGTTTTTCTCAAATAGTAGACGAGA
TCTGTGAGGTTAATTCTTTTGTTCCATTCATAGACAACATCTGGGTGTTG
GTTTTTTTGTCGGCATCTAAAAATTACATTATCCACTGGGCTAGGAGAAA
TCTGTTCTTTCCTTTATTTGATAAAAATTTAAGAAAGTGAAAAACCGACG
TATTCTTTTCTTTATTTTTCCTGTCTCGCCTACTACAGAAAGCGCTCCGT
GTTGTTATTCTGAATAAAACATAAGTTGGATTGTCGGTAGATCGAAGATT
GCTTCATTCATTTTGATTCAAAGGTGTCTTCTATAAAAAAGCCTATCGAA
TCTCAACTGACGTGATCCTTTCTCACATCCTTCTCTTAGCTCTGATGAAA
ATAGTCTTGACAATTCTTACTTGAGTTAGTCCTAAAGGCCCGTAATATTC
TGAACTAATCATAACTTGACAAAATCAAAACTAAGTGTATCTAAATCTTG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011797XLOC_011797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021026-exon-sc0000376-1491911889:264858..265709TCONS_00021026-exon-sc0000376-1491911889:264858..265709Clytia hemisphaericaexon
TCONS_00021026-exon-sc0000376-1510915933:264858..265709TCONS_00021026-exon-sc0000376-1510915933:264858..265709Clytia hemisphaericaexon
TCONS_00021026-exon-sc0000376-1575043694:264858..265709TCONS_00021026-exon-sc0000376-1575043694:264858..265709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:264858..265709 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.857611	1.44741	2.4983	1.93921	1.59645	2.13421	1.4232	1.34885	0.987417	1.92176	0.4472	1.10345	1.31584	0.918762	1.09469	1.2438	1.4859	1.10624	0.858116	0.903042	1.86202	2.59325	1.22184	1.91073	1.16286	0.793769	4.01078	1.91602	1.33691	1.67477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top