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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021030 ID=TCONS_00021030|Name=TCONS_00021030|organism=Clytia hemisphaerica|type=transcript|length=2112bpRun BLAST on NCBI protein sequence of TCONS_00021030-protein >TCONS_00021030-protein ID=TCONS_00021030-protein|Name=TCONS_00021030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=662bp MLQKPKNWLAETLWKPKKTHSLEQLRYLHYILQRNSTVTDSNKGLVVETLRun BLAST on NCBI transcript from alignment at sc0000377:27106..65388+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021030 ID=TCONS_00021030|Name=TCONS_00021030|organism=Clytia hemisphaerica|type=transcript|length=38283bp|location=Sequence derived from alignment at sc0000377:27106..65388+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000377:27106..65388+ >TCONS_00021030 ID=TCONS_00021030|Name=TCONS_00021030|organism=Clytia hemisphaerica|type=CDS|length=35748bp|location=Sequence derived from alignment at sc0000377:27106..65388+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021030 vs. Swiss-Prot (Human)
Match: CL16A (Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=1 SV=2) HSP 1 Score: 506.908 bits (1304), Expect = 3.016e-165 Identity = 294/667 (44.08%), Postives = 401/667 (60.12%), Query Frame = 3
Query: 126 MLQKPKNWLAETLWKPKKT-HSLEQLRYLHYILQRNSTVTDSNKGLVVETLRSIAEILIWGDQNDSTVFDFFLEKNMLLFFLKFMTQNCGSYVTVQLLQTLNILFENIRSQTSLYFLLSNNHVNSIIVHKFDFSNEEVLAYYISFLKTLSLKLNRQTINFFFNERKGDFPLYTEAIKFFHHPESMVRIAVRTLTLNVYKVG--HQKMLEFICDKTATPYFSNLIWLIGKDAIELDDCVMQESDHFKYDKLKANTADHLDHLHYLNDILLLKIDVLNMILTDHMVNRLLIPLYIYSLPSKDDLVGENDPDRVHISKLVALFLLAQHIMIMEHKPLVNAIMDVLLNENEIHSTAYTPATPDFEDRKXXXXXXXXXXXRAFIPPPAPLESQLEACGITRDSYNLNMKLKMLSEDKPDKEGNNSKLTKR-NSKFYITGDGDVIVTEDSDNGSELDDENGACAVDDKTNDSMKESQSIERTTDTEKQTRKSPEIPGDAEPKTGHNTSSSQTPEEAASSAAD-GEPTQENGIFLRSILKSLNCLNGDGEAFFAICLLYTILVNKGINRTSLSDIGLCLP--KENEDYNDEVMDHLLRFLEEGVQDGSSVRLVTFEMCIKVIRLLTIDDKLIRIKDEHLAMLQNIREASTLQLRNFYKGDSMFVDTFEGQYHRM 2105
M + ++W+ K + HSL+ L+YL+++L +N+TVT+ N+ L+VET+RSI EILIWGDQNDS+VFDFFLEKNM +FFL + Q G YV VQLLQTLNILFENI +TSLY+LLSNN+VNSIIVHKFDFS+EE++AYYISFLKTLSLKLN T++FF+NE DF LYTEAIKFF+HPESMVRIAVRT+TLNVYKV +Q ML +I DKTA PYFSNL+W IG IELDDCV + +H KL A+HLDHLHYLNDIL++ + LN +LTDH++NRL +PLY+YSL ++D +R IS V+L+LL+Q +I+ H PLVN++ +V+LN + S Y D + +++ S R FI P LE LE +K ++ KR N K +V ED + G D + A +K + S+ I+ + ++E+ E +E + T +E S+AA E TQ + FL + +L+ + D A F +CLLY + NKG++ L I L +P E YN + + L+R + Q +RL T E+ +++ + +KD HLA L+ RE S +R+FYKG+ +F+D FE +Y M
Sbjct: 1 MFGRSRSWVGGGHGKTSRNIHSLDHLKYLYHVLTKNTTVTEQNRNLLVETIRSITEILIWGDQNDSSVFDFFLEKNMFVFFLNILRQKSGRYVCVQLLQTLNILFENISHETSLYYLLSNNYVNSIIVHKFDFSDEEIMAYYISFLKTLSLKLNNHTVHFFYNEHTNDFALYTEAIKFFNHPESMVRIAVRTITLNVYKVSLDNQAMLHYIRDKTAVPYFSNLVWFIGSHVIELDDCVQTDEEHRNRGKLSDLVAEHLDHLHYLNDILIINCEFLNDVLTDHLLNRLFLPLYVYSLENQD-----KGGERPKISLPVSLYLLSQVFLIIHHAPLVNSLAEVILNGD--LSEMYAKTEQDIQ------RSSAKPSIRCFIKPTETLERSLEM----------------------NKHKGKRRVQKRPNYK-------NVGEEEDEEKGPTEDAQEDA----EKAKGTEGGSKGIKTSGESEEIEMVIMERSKLSELAASTSVQEQNTTDEEKSAAATCSESTQWSRPFLDMVYHALDSPDDDYHALFVLCLLYAMSHNKGMDPEKLERIQLPVPNAAEKTTYNHPLAERLIRIMNNAAQPDGKIRLATLELSCLLLKQQVLMSAGCIMKDVHLACLEGAREESVHLVRHFYKGEDIFLDMFEDEYRSM 621 The following BLAST results are available for this feature:
BLAST of TCONS_00021030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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