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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021053 ID=TCONS_00021053|Name=TCONS_00021053|organism=Clytia hemisphaerica|type=transcript|length=2052bpRun BLAST on NCBI protein sequence of TCONS_00021053-protein >TCONS_00021053-protein ID=TCONS_00021053-protein|Name=TCONS_00021053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp MLYAGTRTTMKLEFGGGSITEEIFATLKSDVTLRGFREHKDLKAADAPMTRun BLAST on NCBI transcript from alignment at sc0000377:287384..301418+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021053 ID=TCONS_00021053|Name=TCONS_00021053|organism=Clytia hemisphaerica|type=transcript|length=14035bp|location=Sequence derived from alignment at sc0000377:287384..301418+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000377:287384..301418+ >TCONS_00021053 ID=TCONS_00021053|Name=TCONS_00021053|organism=Clytia hemisphaerica|type=CDS|length=5166bp|location=Sequence derived from alignment at sc0000377:287384..301418+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021053 vs. Swiss-Prot (Human)
Match: TWF1 (Twinfilin-1 OS=Homo sapiens GN=TWF1 PE=1 SV=3) HSP 1 Score: 342.813 bits (878), Expect = 5.066e-111 Identity = 165/341 (48.39%), Postives = 237/341 (69.50%), Query Frame = 2
Query: 95 LPASEELKTFLSSAKDGNCRLIKIGIANEELVLIKSDDVRGSWEEDFDDILANSVEAKQPSYLFFRLDTKNNLGYEWLFIAYSPDDSQVREKMLYAGTRTTMKLEFGGGSITEEIFATLKSDVTLRGFREHKDLKAADAPMTYQEEELKEVK--QMHISAAATTKASTLPGISFPMSEEAINELVRIASKEVSYVQLSIDVNKEMINLEKTCDIETSQLAGEVPTDKPRYHFFLFKHTHEGDYLESIVFIYSMPGYACSVKERMLYSSCKATLLSGCEDVLKMEVTKKLEISEGSELTEEFLQDELHPKKNLHRXXXXXXX--XXXRGAKRIIKPSANAES 1105
+ ASE++K + A++G RL+KI I NE+LV+ SW++D+D + +E KQP Y+ FRLD++N GYEW+FIA+SPD S VR+KMLYA TR T+K EFGGG I +E+F T+K DV+L G++++ +++ AP+T EEEL+++K ++ TK TL G++FP+S EA L ++ +++++YVQL ID+ E+I L T + E L +P D RYHFFL+KH+HEGDYLESIVFIYSMPGY CS++ERMLYSSCK+ LL E L+M+V +K+EI G ELT +FL +E+HPK++ H+ F+KPK RG +R+I+ A E+
Sbjct: 7 IQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPLLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEA 347 The following BLAST results are available for this feature:
BLAST of TCONS_00021053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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