TCONS_00021055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021055
Unique NameTCONS_00021055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021055 ID=TCONS_00021055|Name=TCONS_00021055|organism=Clytia hemisphaerica|type=transcript|length=320bp
GCACACCTTTCGTACCACCTAACGTACCACCTAGCGTAGCCTCAGCATGT
GAAAAAGTCAAAACCAGATATTTCCAAATCGACGAAGACAATCAACAACT
TTCCTGGGAAGACGCTCAAACGGCTTGCATGGAAAAAAACGCACATTTGA
TCACTGTGAAATCACACAAAGAAAACCTGTGTGCATTTGTGAAATATCAA
ACATCTTTCAGATCGTTAGACGCATTTTGGCTTGGCCTGGTGAACGACtt
tgaagagaaaaagaaatttcgatGGATTGATAACGACCTCTCGCCTTATC
GAAACTGGTGTGGTGGAGTT
Run BLAST on NCBI

transcript from alignment at sc0000377:36658..37389-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021055 ID=TCONS_00021055|Name=TCONS_00021055|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0000377:36658..37389- (Clytia hemisphaerica)
GCACACCTTTCGTACCACCTAACGTACCACCTAGCGTAGCCTCAGCATGT
GAAAAAGTCAAAACCAGATATTTCCAAATCGACGAAGACAATCAACAACT
TTCCTGGGAAGACGCTCAAACGGCTTGCATGGAAAAAAACGCACATTTGA
TCACTGTGAAATCACACAAAGAAAACCTGTGTGCATTTGTGAAATATCAA
ACATCTTTCAGATCGTTAGAGTAAGTTTCGAATAGTTTCATCGGTGAACG
AAATTCGTGGTTACCTACAGTATCTAAACATCCTGTCTCGCAGTCCTGTT
GGAGCATTTTCCCTGAGTGGGGATGAAACCTTCTATCAAAATCTCAATGG
AGATTCTATTGCTCCTAGCTCAAAGATTTCAGCGAGGATGGTTTTGGGGT
GCAATTTTGATAGAATTTCAAGTGGGGATGAAATCAAACTGTGGTGTATT
TTTTCCACCGGGACGAAATTTTGGTCCAATTTTCCAGCGGGATGGGGGTC
CCAGCGGTCTGTGACACAGGGGTGTATGTAATCAAATCAATATGGAGTAA
AATATTGAATAATGCTATCTAATTATAAAATCTGTTAATTAGCAGGACAT
TATGAAATTCTATTTTCTCAATTTATCTTTAGCGCATTTTGGCTTGGCCT
GGTGAACGACTTTGAAGAGAAAAAGAAATTTCGATGGATTGATAACGACC
TCTCGCCTTATCGAAACTGGTGTGGTGGAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011808XLOC_011808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021055-exon-sc0000377-1575043694:37170..37389TCONS_00021055-exon-sc0000377-1575043694:37170..37389Clytia hemisphaericaexon
TCONS_00021055-exon-sc0000377-1575043694:36658..36757TCONS_00021055-exon-sc0000377-1575043694:36658..36757Clytia hemisphaericaexon
TCONS_00021055-exon-sc0000377-1510915933:37170..37389TCONS_00021055-exon-sc0000377-1510915933:37170..37389Clytia hemisphaericaexon
TCONS_00021055-exon-sc0000377-1510915933:36658..36757TCONS_00021055-exon-sc0000377-1510915933:36658..36757Clytia hemisphaericaexon
TCONS_00021055-exon-sc0000377-1491911889:37170..37389TCONS_00021055-exon-sc0000377-1491911889:37170..37389Clytia hemisphaericaexon
TCONS_00021055-exon-sc0000377-1491911889:36658..36757TCONS_00021055-exon-sc0000377-1491911889:36658..36757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:36658..37389 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.721236	0	0	0	0	0.111972	0.264482	0.329606	9.99294	1.62204	1.5757	0	2.3139	0.167476	0.455294	3.87509	1.70272	0	0.133961	0	0.611524	0.357286	0.786958	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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