TCONS_00021080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021080
Unique NameTCONS_00021080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021080 ID=TCONS_00021080|Name=TCONS_00021080|organism=Clytia hemisphaerica|type=transcript|length=495bp
GTGTTCCACTCTTTTCTAGAAAACAAATatcaaagtaaacaaagtagaTA
ATAATTTACACAAAAGGAATCATTTAACAACAACCATATCATTACAAGCA
TCAATCATGAAGCAATCTTTGAATCCCAGAGATAGCGGTAAATACATTGC
AGAGAATACCAAATATGTTCAAATTCAGCACAAGGAAATTCCAAAAGCAG
CTCTCAGACTGAAAGAAGTGATGGGTAGAAACAAATATTCAATCAAGAAA
TGGAAAGAATGGCCTCTTCATCCTAAAGCAATGAATGATGATACTCTGCA
TTGGATATTGACCGTTGAcacattaaatttttcattttggttGCCTAGGA
ACGAGCCTCAGTTTCAAGTCGAGTACAAAGGGAAGACGTATGAAGATTAT
GAAGCACTGTGCGCATGCGTAAATCGAGCAGTCGAGTATCACTTTAGCAC
GGGGTTTATTTAAAGAAGACTGGATGGCCGCGATCAAGTAGCCCG
Run BLAST on NCBI

transcript from alignment at sc0000377:235128..235901-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021080 ID=TCONS_00021080|Name=TCONS_00021080|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at sc0000377:235128..235901- (Clytia hemisphaerica)
GTGTTCCACTCTTTTCTAGAAAACAAATATCAAAGTAAACAAAGTAGATA
ATAATTTACACAAAAGGAATCATTTAACAACAACCATATCATTACAAGCA
TCAATCATGAAGCAATCTTTGAATCCCAGAGATAGCGGTAAATACATTGC
AGAGAATACCAAATATGTTCAAATTCAGCACAAGGAAATTCCAAAAGCAG
CTCTCAGACTGAAAGAAGTGATGGGTAGAAACAAATATTCAATCAAGAAA
TGGAAAGAATGGCCTCTTCATCCTAAAGCAATGAATGATGATACTCTGCA
TTGGATATTGACCGTTGACACATTAAATTTTTCATTTTGGTTGCCTAGGA
ACGAGCCTCAGTTTCAAGTCGAGTACAAAGGGAAGACGTATGAAGATTAT
GAAGCACTGTGCGCATGCGTAAATCGAGCAGTCGAGGTAAACAGCAATTA
ATTAGCTACACGCTTTTTATAAGAACATCGAATAGTTTTAATAGCCTCTG
GATGTGCTAAACTCTTTGTGTTTTAAGCCAAAAAATGTTCTTAAAATGTT
ATTAATTTCACCATTTCGTGAGCATTTTTGTCCATTTCTAAGAAATCAGT
TGTTTTTAGAGGTCGCAAAGCCTTTAAATGTTCTTAACTTTTTCCTAGTA
TTTTGGCCATTGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAA
CATGTATTTGCTTAGTATCACTTTAGCACGGGGTTTATTTAAAGAAGACT
GGATGGCCGCGATCAAGTAGCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011813XLOC_011813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021080-exon-sc0000377-1575043694:235466..235901TCONS_00021080-exon-sc0000377-1575043694:235466..235901Clytia hemisphaericaexon
TCONS_00021080-exon-sc0000377-1575043694:235128..235186TCONS_00021080-exon-sc0000377-1575043694:235128..235186Clytia hemisphaericaexon
TCONS_00021080-exon-sc0000377-1510915933:235466..235901TCONS_00021080-exon-sc0000377-1510915933:235466..235901Clytia hemisphaericaexon
TCONS_00021080-exon-sc0000377-1510915933:235128..235186TCONS_00021080-exon-sc0000377-1510915933:235128..235186Clytia hemisphaericaexon
TCONS_00021080-exon-sc0000377-1491911889:235466..235901TCONS_00021080-exon-sc0000377-1491911889:235466..235901Clytia hemisphaericaexon
TCONS_00021080-exon-sc0000377-1491911889:235128..235186TCONS_00021080-exon-sc0000377-1491911889:235128..235186Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:235128..235901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.1688	22.3568	4.76493	3.26406	13.8381	8.05213	9.28087	7.91417	8.11425	6.52043	9.58612	6.24632	1.14085	2.67583	7.26307	7.36944	7.2068	8.14364	1.55297	1.0913	4.37024	4.79746	31.0444	24.7427	5.51639	4.69282	2.77536	3.90356	17.152	18.1214
Blast
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BLAST of TCONS_00021080 vs. Swiss-Prot (Human)
Match: QSPP (Queuosine salvage protein OS=Homo sapiens GN=C9orf64 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.267e-21
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 2 
Query:  107 MKQSLNPRDSGKYIAENTKYVQIQHKEIPKAALRLKEVMGRNKYSIKKWKEW-PLHPKAMNDDTLHWILTVDTLNFSFWLPRNEPQFQVEYKGKTYEDYEALCACVNRAVE 436
            M   LNPR+S K+IAEN++ V I    + + A  L       +  ++ WK    L+P+A ++  ++W+   DTLNFSFW  ++E +  V Y+GKTY  Y +LCA VNRA++
Sbjct:    1 MDGLLNPRESSKFIAENSRDVFIDSGGVRRVAELLLAKAAGPELRVEGWKALHELNPRAADEAAVNWVFVTDTLNFSFWSEQDEHKCVVRYRGKTYSGYWSLCAAVNRALD 111
The following BLAST results are available for this feature:
BLAST of TCONS_00021080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QSPP4.267e-2139.64Queuosine salvage protein OS=Homo sapiens GN=C9orf... [more]
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