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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021087 ID=TCONS_00021087|Name=TCONS_00021087|organism=Clytia hemisphaerica|type=transcript|length=2038bp
ttctttcaCCAGGTATTCAAAtacaacaaaattaaaaaacaagatATTGA
TGATAAAGAAATGCATCATGGTTTATTCATACTTTAGGGTCATATTTTTC
CTAGCATTCCTTGTTAAATTCTGTCTTGCTGCAACATTTCTTTCTCATTT
CGAACACAAGCCTGAATTCACAAATGGGACCAAAAACGCGTTGAGACTTT
TCGCGCCATTACAAGACTTGAAGGGGCTTTTTATTTGCCATGTGCTTCCT
TACGCCATTATGGACCGTAATCTTAACATCGCTTTCACAGACATACAAAA
TCGTTTAGTGTCGGGATCAAAAATCAGAAAGGATTCAATCGATGACCTTA
AGTCAGATGTTTATAAGATTGATGCTGAGTCAGCGTTTTTGAAGCTAGCA
GACGTCCGAACAAAAATGGGTTTATTTCACGAGAACGCTAATCAGAAGAG
AAATTTAGAAGACGAGCTTTCCAAGGTAGAAAAGATTGAAGACTCTGAAG
GTAAACAATATAAAGAAAGTGCGGAAAGGGTtataaattatttctacaaT
GCGCCTGCTAACCTTCGAATTTCTtcagaagaatgtttcaatgaTGACTT
TAAAAGACAATTTGAGGACCCGAATTTACGAGCTTATTCTGCAGATCCAC
GCCGTAATACACTAAGCAGTCCTGAGTTTACCGAACATTCTCGATATCTG
GCTAAGAAATATAACATGTTTACTATCAAAGATATGAGTGGGAATGTACG
AACTACAGACCAGAAAAAGTCAGAGCGAAACCCAGCTCTTTCTGGTGCTT
TAAAGGAATATAATAAAGGCTTGAATGTATTtgagttttttatgaaaacg
aATCGTAAGGCACACCAGAACGCGACTGAAATATGAAGACAATAAGGGAT
ATTATAGATGTTAGATGTTAGATGAGCTTATTGATGTTTTCAAACCGAGG
CTATGagctttacacgttttttttaggaaacacacttttaagaaacatga
atctaaaaatctaagaaacatctaagaaacatgctgaggctgagaatgaa
aaaattacattttttaattcggtttcttttaagaaccttccaattcagcc
ttccatgaggctgattatgtcaaaaagtttagaaacatgtaagaaacatt
caaggctcaaaaggccgatttcttaagaaacattgaggctgcttgataaa
actagtttcttaaaaaaaaacgtgtatttgtgAGTGAAAACTCGAAAAGA
AACCCAGGATTTTTCTAACGCCTTGGAGTGATACAATGAAGGAAGTTTCA
ATTCCGACAGGATTGAAGTGTTTTTTGAACGTATATCTGATGTTaaatgg
acgttatgaacgtaaGCTGGACCACGTTACCTATCAACTTGGGATTATTT
GGCATTTCAGTAGAAGGAAAACTTATTAAATTTGTTAAATTGAATTGGAT
TAACTTGAACGTTGCAAAGGTTTAGAATAATACCATTGACAATTCAGCGA
ACGCTTGAACTCGTGGAAAGGCtttagacaaaatttgaaatggaTGAGGT
CATGGACAAAACATATTATACATTGTAGGCGTGAACCTAACATATTTGAC
TTTTtgtgaaaagaaaatgaatttttacaCAGGAGCCGCTTGTCATTATG
CGGATATCAATCGGTGAATTAATATATGCAATTACGATATTGGCCTTATA
TTTCTTAGTATATTTTATTGGTATTTCATAACAACGTGATCCACAACCTT
TGAGAGACTGGATTCTAACGATAAAGAAGTTAGTCTCAATAAGGgccgta
aaattcacaaaattatcctatttttcctcctttttagtcccgctaagggt
ccgaaGGTCGAAATTCGGGTGGTATGTACCCgccagctcgcaaccctagt
actaATCCGCCGGATGTCCGCACAAACCGATCAACTATATTTTCTGAACT
ACCCAGACATCCATGGAATTAGGGAATTAGTTATGTGAATAGGGATGCGA
ATTAGACGCGAAAAATATACCGGTTGACATCCCTTTAT Run BLAST on NCBI protein sequence of TCONS_00021087-protein >TCONS_00021087-protein ID=TCONS_00021087-protein|Name=TCONS_00021087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
SFTRYSNTTKLKNKILMIKKCIMVYSYFRVIFFLAFLVKFCLAATFLSHF
EHKPEFTNGTKNALRLFAPLQDLKGLFICHVLPYAIMDRNLNIAFTDIQN
RLVSGSKIRKDSIDDLKSDVYKIDAESAFLKLADVRTKMGLFHENANQKR
NLEDELSKVEKIEDSEGKQYKESAERVINYFYNAPANLRISSEECFNDDF
KRQFEDPNLRAYSADPRRNTLSSPEFTEHSRYLAKKYNMFTIKDMSGNVR
TTDQKKSERNPALSGALKEYNKGLNVFEFFMKTNRKAHQNATEI Run BLAST on NCBI transcript from alignment at sc0000377:160134..162171 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021087 ID=TCONS_00021087|Name=TCONS_00021087|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at sc0000377:160134..162171 (Clytia hemisphaerica)
ATAAAGGGATGTCAACCGGTATATTTTTCGCGTCTAATTCGCATCCCTAT
TCACATAACTAATTCCCTAATTCCATGGATGTCTGGGTAGTTCAGAAAAT
ATAGTTGATCGGTTTGTGCGGACATCCGGCGGATtagtactagggttgcg
agctggcGGGTACATACCACCCGAATTTCGACCttcggacccttagcggg
actaaaaaggaggaaaaataggataattttgtgaattttacggcCCTTAT
TGAGACTAACTTCTTTATCGTTAGAATCCAGTCTCTCAAAGGTTGTGGAT
CACGTTGTTATGAAATACCAATAAAATATACTAAGAAATATAAGGCCAAT
ATCGTAATTGCATATATTAATTCACCGATTGATATCCGCATAATGACAAG
CGGCTCCTGtgtaaaaattcattttcttttcacaAAAAGTCAAATATGTT
AGGTTCACGCCTACAATGTATAATATGTTTTGTCCATGACCTCAtccatt
tcaaattttgtctaaaGCCTTTCCACGAGTTCAAGCGTTCGCTGAATTGT
CAATGGTATTATTCTAAACCTTTGCAACGTTCAAGTTAATCCAATTCAAT
TTAACAAATTTAATAAGTTTTCCTTCTACTGAAATGCCAAATAATCCCAA
GTTGATAGGTAACGTGGTCCAGCttacgttcataacgtccatttAACATC
AGATATACGTTCAAAAAACACTTCAATCCTGTCGGAATTGAAACTTCCTT
CATTGTATCACTCCAAGGCGTTAGAAAAATCCTGGGTTTCTTTTCGAGTT
TTCACTcacaaatacacgtttttttttaagaaactagttttatcaagcag
cctcaatgtttcttaagaaatcggccttttgagccttgaatgtttcttac
atgtttctaaactttttgacataatcagcctcatggaaggctgaattgga
aggttcttaaaagaaaccgaattaaaaaatgtaattttttcattctcagc
ctcagcatgtttcttagatgtttcttagatttttagattcatgtttctta
aaagtgtgtttcctaaaaaaaacgtgtaaagctCATAGCCTCGGTTTGAA
AACATCAATAAGCTCATCTAACATCTAACATCTATAATATCCCTTATTGT
CTTCATATTTCAGTCGCGTTCTGGTGTGCCTTACGATtcgttttcataaa
aaactcaAATACATTCAAGCCTTTATTATATTCCTTTAAAGCACCAGAAA
GAGCTGGGTTTCGCTCTGACTTTTTCTGGTCTGTAGTTCGTACATTCCCA
CTCATATCTTTGATAGTAAACATGTTATATTTCTTAGCCAGATATCGAGA
ATGTTCGGTAAACTCAGGACTGCTTAGTGTATTACGGCGTGGATCTGCAG
AATAAGCTCGTAAATTCGGGTCCTCAAATTGTCTTTTAAAGTCAtcattg
aaacattcttctgaAGAAATTCGAAGGTTAGCAGGCGCAttgtagaaata
atttataACCCTTTCCGCACTTTCTTTATATTGTTTACCTTCAGAGTCTT
CAATCTTTTCTACCTTGGAAAGCTCGTCTTCTAAATTTCTCTTCTGATTA
GCGTTCTCGTGAAATAAACCCATTTTTGTTCGGACGTCTGCTAGCTTCAA
AAACGCTGACTCAGCATCAATCTTATAAACATCTGACTTAAGGTCATCGA
TTGAATCCTTTCTGATTTTTGATCCCGACACTAAACGATTTTGTATGTCT
GTGAAAGCGATGTTAAGATTACGGTCCATAATGGCGTAAGGAAGCACATG
GCAAATAAAAAGCCCCTTCAAGTCTTGTAATGGCGCGAAAAGTCTCAACG
CGTTTTTGGTCCCATTTGTGAATTCAGGCTTGTGTTCGAAATGAGAAAGA
AATGTTGCAGCAAGACAGAATTTAACAAGGAATGCTAGGAAAAATATGAC
CCTAAAGTATGAATAAACCATGATGCATTTCTTTATCATCAATatcttgt
tttttaattttgttgtaTTTGAATACCTGGtgaaagaa Coding sequence (CDS) from alignment at sc0000377:160134..162171 >TCONS_00021087 ID=TCONS_00021087|Name=TCONS_00021087|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0000377:160134..162171 (Clytia hemisphaerica)
TCATATTTCAGTCGCGTTCTGGTGTGCCTTACGATtcgttttcataaaaa
actcaAATACATTCAAGCCTTTATTATATTCCTTTAAAGCACCAGAAAGA
GCTGGGTTTCGCTCTGACTTTTTCTGGTCTGTAGTTCGTACATTCCCACT
CATATCTTTGATAGTAAACATGTTATATTTCTTAGCCAGATATCGAGAAT
GTTCGGTAAACTCAGGACTGCTTAGTGTATTACGGCGTGGATCTGCAGAA
TAAGCTCGTAAATTCGGGTCCTCAAATTGTCTTTTAAAGTCAtcattgaa
acattcttctgaAGAAATTCGAAGGTTAGCAGGCGCAttgtagaaataat
ttataACCCTTTCCGCACTTTCTTTATATTGTTTACCTTCAGAGTCTTCA
ATCTTTTCTACCTTGGAAAGCTCGTCTTCTAAATTTCTCTTCTGATTAGC
GTTCTCGTGAAATAAACCCATTTTTGTTCGGACGTCTGCTAGCTTCAAAA
ACGCTGACTCAGCATCAATCTTATAAACATCTGACTTAAGGTCATCGATT
GAATCCTTTCTGATTTTTGATCCCGACACTAAACGATTTTGTATGTCTGT
GAAAGCGATGTTAAGATTACGGTCCATAATGGCGTAAGGAAGCACATGGC
AAATAAAAAGCCCCTTCAAGTCTTGTAATGGCGCGAAAAGTCTCAACGCG
TTTTTGGTCCCATTTGTGAATTCAGGCTTGTGTTCGAAATGAGAAAGAAA
TGTTGCAGCAAGACAGAATTTAACAAGGAATGCTAGGAAAAATATGACCC
TAAAGTATGAATAAACCATGATGCATTTCTTTATCATCAATatcttgttt
tttaattttgttgtaTTTGAATACCTGGtgaaaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021087-exon-sc0000377-1491911889:160134..162171 | TCONS_00021087-exon-sc0000377-1491911889:160134..162171 | Clytia hemisphaerica | exon |
| TCONS_00021087-exon-sc0000377-1510915933:160134..162171 | TCONS_00021087-exon-sc0000377-1510915933:160134..162171 | Clytia hemisphaerica | exon |
| TCONS_00021087-exon-sc0000377-1575043694:160134..162171 | TCONS_00021087-exon-sc0000377-1575043694:160134..162171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:160134..162171 . |
Blast
The following BLAST results are available for this feature:
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