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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021092 ID=TCONS_00021092|Name=TCONS_00021092|organism=Clytia hemisphaerica|type=transcript|length=2869bp
aaattatttcaaaatttccagggggtaaaagactgattcactcgtccacc
gtcactttaagGAACATGTGAGAAGTTGGTTTTGCGAACGATGCAAGATG
TTCATGCGACTCTCAGTAAATTGATTTTCGTGTTAACCACATTGCTCGTT
GGAATTTCTGTGTTTCTTGTCATTTGGATCATTCACAAGCGAAATGGAAA
AATGTTCAACGTCTCGTCCACTGGTTACTGGTTTGGACTCATCCTCTCAA
TCATTTGCTGTCTGGCGTCCAACATCGTCTTCATCGTGGAACCGAACAAT
ACATTATGTGTTATTCAAACTATCGCCATCCCAGTTACCTTGATCTATGT
GCATAGCTTTGTTTTGATGAAAGCCGTACGACTGTTCTTTTCATTTCTAG
GTTTCCCTCGCTTCGCTGGTGTGATAAGTACCACCGCAATTGAGCTTATC
ATCGGTCTATCATTTCCTGTAATTGGTGGATTAATCGCTTGCCAACAATT
ATTGTTAAATGGGATGGATTTGATGAAGGAACGTGTCTTCCATAAGTTGA
CCACTGATGAAGAGTTTTTAGTTGTTAGCTGCACCAATGTTAATCCGTTA
ATCGTCCCCATAACAGGAATTTGCGCACTCGTTACCTTGGTTGTCAATTT
TAACAGTCGAAATATAccgaatatttatgatgaaccCTGGGATCTACTCT
ATTTCAGTTTGTTCTCTCTCGTCTGTCAAATATTATATGTCGCTGTCTTT
TATGCATACGACTATACCATGGCTATGGAATATTATCACGAGGTCACGTG
TGCTGTTTTTCTACTTGCCGTTTGTTTTATGGCTCTTGCAAATTTGTTTT
GTCGGAAGATTTACTTCACTATTAAAGGGTGGGAAGAACCCTACCAAGTC
CGAAATGGTATCACCGTCGACCGTTCTCAATCCTTTACTGCCGCCCGTTG
CCAAGAAACCGTCATTGGTGGCACACAAAATGAACCGCCAGAACGTCCTT
CTACTCCGCCCATGTCTATTGGTTCGCCCATGAAGAAAACCTATTTGAGT
GATGAGGTATGATAAAAGGGCCCAATGACAAGTTGAATGCATTTAAACGA
GGAGAGTCACTTCTCAGTTTGTCCGTAGGGCTCCGACTGCGATGTTTGGT
TCGAGATATAACGCAAGCTAGATTTTTGTTCGATCTGGGAATGGAATCTC
TTAACTAACATCGCCTACCAAATTCTACCAACCAAGTAGAGATTTTTCGG
TTTGGATTGTTCCGTATGATGTATAGACGCTCGGATAAAGAGATTCGTTT
GCAGAAACGTGCAAACATGTGTACTGTGAAGATTGATTTATTCTTTTCAA
ATTGTTGcatttttagaaactttgaaatatttttccattttagtttgttt
ggaaaaatttgatttatgaACTGTCCTAAATTTTAAGTGGGATTATGCAG
TTACTGTTAATATTTTGTACATAGTATTTTGTTTTAAGAGTTTTATCACG
CATTCTCTACTAGGAGATTTTTAACGGTGATATTTTTAGGATTACTTAAT
CTCATGTATATAGTGTATATATTATTGCAACTCAGCGTAATGAGTAGATC
GTTCGCGTTGAAAATAGAGTTATAATTAAATCGACGAATTTGTAAGACAT
TAAAATTGTGACATAGAACTATTTTTTCTCGGGATTACCATTACTGATTT
GGTAAATTTTGAGTACGTTCCGGATATATTCGCGTGTAGAGTCGATTTGA
CATGAGGTTGTTTGTCAGAGATGTGTCGTCAAATTTAAGGCTATATCTAT
TTAcctttgctttgttttttttaaacattttttatattttgaaaacattt
tttgcagtttttatctcTTGTGTTTTTTAAGGAAGTTTTTTTGTTTCCAC
CActgtttttttacgttttttattttccattttatatTTTCGGCCTGTTT
TTTTTACAGTTGATTTTCCAACATTGTTAACCCACAAGCAGGAATGGAAA
AACCTAAAGATGTTTTAGAGTTTTCGAttgaagatttttctaaaatgtcC
GTCGTTAAAGACAACGATTAAAATTTGCCGATATACATTACGGGTAAAGA
ATTCGTCACATTTTACCACCGGATTTTTTGAGACCAAGAATTTTTACAAA
TAACGGTGAAAACGGCGGAAAACAACAATAAACAAAGCATTCATTGGATT
TCCTTTAGTTTTTGTCGAAATTCAGTATTCAAGCGTTCggtttaaatgaa
aaaaaacaacgttaAAATGAATGTCAGAGCGTTTGGTAAAAAcgttgttt
gatttttttgaaatattatcgCAATTTCATTGTTGTTAACTTCACGTATA
AAGTTTAGCCCTCTGTCAAGGCACTATTATATGcccccagtggtttgcgt
gaatgggccTTTTTCACTTACGTGAATTGCTCGGGGGGGGGCTGTTATAT
TACAGTACCTCTATTTTTACAgaggaaagttttttttttctccattaatt
ttagtttcattttttatcgtttcaatattttattttaaattttattttct
ttacaaTGCATGAAGCTGTCTTTTGCCTGTGCTTTATAACCTCACAATGG
CAATATGTTGTCAgatcagatttttcaaaaattatccgGAGATCTTCAGG
CTTTTAGACGATTAGGCTTTGCATGATGCGTTCTTTCAATTACTTCTTTG
AAGTTTTATATTAAAACCGAGATTTACCTTTGCTTTCCAAACTGGCAATA
GACTATTATCAAATTGACATTTGTTTTAGCCTTAGCTTAGCCCTAGTAGC
ATTTGATTTATTGTTGCATATTATTTCTTCTTAGAAATTTCTAGGTATTA
TTATTTTATGCCTTATTAT Run BLAST on NCBI protein sequence of TCONS_00021092-protein >TCONS_00021092-protein ID=TCONS_00021092-protein|Name=TCONS_00021092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MQDVHATLSKLIFVLTTLLVGISVFLVIWIIHKRNGKMFNVSSTGYWFGL
ILSIICCLASNIVFIVEPNNTLCVIQTIAIPVTLIYVHSFVLMKAVRLFF
SFLGFPRFAGVISTTAIELIIGLSFPVIGGLIACQQLLLNGMDLMKERVF
HKLTTDEEFLVVSCTNVNPLIVPITGICALVTLVVNFNSRNIPNIYDEPW
DLLYFSLFSLVCQILYVAVFYAYDYTMAMEYYHEVTCAVFLLAVCFMALA
NLFCRKIYFTIKGWEEPYQVRNGITVDRSQSFTAARCQETVIGGTQNEPP
ERPSTPPMSIGSPMKKTYLSDEV Run BLAST on NCBI transcript from alignment at sc0000378:3317..6376+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021092 ID=TCONS_00021092|Name=TCONS_00021092|organism=Clytia hemisphaerica|type=transcript|length=3060bp|location=Sequence derived from alignment at sc0000378:3317..6376+ (Clytia hemisphaerica)
aaattatttcaaaatttccagggggtaaaagactgattcactcgtccacc
gtcactttaaggtatgaatagaatttttccaagggcttctttgcaaattt
ttccattttccagggggtatccacacatttccaagaaatattttttgact
gcaAAAGGTTTGTCCACCCATGTATGGAAATTAATTGGAACGGGCCAATG
TTGGtacttttttatacaaattattATGTATCTTCCATCTATATATTTTT
AGGAACATGTGAGAAGTTGGTTTTGCGAACGATGCAAGATGTTCATGCGA
CTCTCAGTAAATTGATTTTCGTGTTAACCACATTGCTCGTTGGAATTTCT
GTGTTTCTTGTCATTTGGATCATTCACAAGCGAAATGGAAAAATGTTCAA
CGTCTCGTCCACTGGTTACTGGTTTGGACTCATCCTCTCAATCATTTGCT
GTCTGGCGTCCAACATCGTCTTCATCGTGGAACCGAACAATACATTATGT
GTTATTCAAACTATCGCCATCCCAGTTACCTTGATCTATGTGCATAGCTT
TGTTTTGATGAAAGCCGTACGACTGTTCTTTTCATTTCTAGGTTTCCCTC
GCTTCGCTGGTGTGATAAGTACCACCGCAATTGAGCTTATCATCGGTCTA
TCATTTCCTGTAATTGGTGGATTAATCGCTTGCCAACAATTATTGTTAAA
TGGGATGGATTTGATGAAGGAACGTGTCTTCCATAAGTTGACCACTGATG
AAGAGTTTTTAGTTGTTAGCTGCACCAATGTTAATCCGTTAATCGTCCCC
ATAACAGGAATTTGCGCACTCGTTACCTTGGTTGTCAATTTTAACAGTCG
AAATATAccgaatatttatgatgaaccCTGGGATCTACTCTATTTCAGTT
TGTTCTCTCTCGTCTGTCAAATATTATATGTCGCTGTCTTTTATGCATAC
GACTATACCATGGCTATGGAATATTATCACGAGGTCACGTGTGCTGTTTT
TCTACTTGCCGTTTGTTTTATGGCTCTTGCAAATTTGTTTTGTCGGAAGA
TTTACTTCACTATTAAAGGGTGGGAAGAACCCTACCAAGTCCGAAATGGT
ATCACCGTCGACCGTTCTCAATCCTTTACTGCCGCCCGTTGCCAAGAAAC
CGTCATTGGTGGCACACAAAATGAACCGCCAGAACGTCCTTCTACTCCGC
CCATGTCTATTGGTTCGCCCATGAAGAAAACCTATTTGAGTGATGAGGTA
TGATAAAAGGGCCCAATGACAAGTTGAATGCATTTAAACGAGGAGAGTCA
CTTCTCAGTTTGTCCGTAGGGCTCCGACTGCGATGTTTGGTTCGAGATAT
AACGCAAGCTAGATTTTTGTTCGATCTGGGAATGGAATCTCTTAACTAAC
ATCGCCTACCAAATTCTACCAACCAAGTAGAGATTTTTCGGTTTGGATTG
TTCCGTATGATGTATAGACGCTCGGATAAAGAGATTCGTTTGCAGAAACG
TGCAAACATGTGTACTGTGAAGATTGATTTATTCTTTTCAAATTGTTGca
tttttagaaactttgaaatatttttccattttagtttgtttggaaaaatt
tgatttatgaACTGTCCTAAATTTTAAGTGGGATTATGCAGTTACTGTTA
ATATTTTGTACATAGTATTTTGTTTTAAGAGTTTTATCACGCATTCTCTA
CTAGGAGATTTTTAACGGTGATATTTTTAGGATTACTTAATCTCATGTAT
ATAGTGTATATATTATTGCAACTCAGCGTAATGAGTAGATCGTTCGCGTT
GAAAATAGAGTTATAATTAAATCGACGAATTTGTAAGACATTAAAATTGT
GACATAGAACTATTTTTTCTCGGGATTACCATTACTGATTTGGTAAATTT
TGAGTACGTTCCGGATATATTCGCGTGTAGAGTCGATTTGACATGAGGTT
GTTTGTCAGAGATGTGTCGTCAAATTTAAGGCTATATCTATTTAcctttg
ctttgttttttttaaacattttttatattttgaaaacattttttgcagtt
tttatctcTTGTGTTTTTTAAGGAAGTTTTTTTGTTTCCACCActgtttt
tttacgttttttattttccattttatatTTTCGGCCTGTTTTTTTTACAG
TTGATTTTCCAACATTGTTAACCCACAAGCAGGAATGGAAAAACCTAAAG
ATGTTTTAGAGTTTTCGAttgaagatttttctaaaatgtcCGTCGTTAAA
GACAACGATTAAAATTTGCCGATATACATTACGGGTAAAGAATTCGTCAC
ATTTTACCACCGGATTTTTTGAGACCAAGAATTTTTACAAATAACGGTGA
AAACGGCGGAAAACAACAATAAACAAAGCATTCATTGGATTTCCTTTAGT
TTTTGTCGAAATTCAGTATTCAAGCGTTCggtttaaatgaaaaaaaacaa
cgttaAAATGAATGTCAGAGCGTTTGGTAAAAAcgttgtttgattttttt
gaaatattatcgCAATTTCATTGTTGTTAACTTCACGTATAAAGTTTAGC
CCTCTGTCAAGGCACTATTATATGcccccagtggtttgcgtgaatgggcc
TTTTTCACTTACGTGAATTGCTCGGGGGGGGGCTGTTATATTACAGTACC
TCTATTTTTACAgaggaaagttttttttttctccattaattttagtttca
ttttttatcgtttcaatattttattttaaattttattttctttacaaTGC
ATGAAGCTGTCTTTTGCCTGTGCTTTATAACCTCACAATGGCAATATGTT
GTCAgatcagatttttcaaaaattatccgGAGATCTTCAGGCTTTTAGAC
GATTAGGCTTTGCATGATGCGTTCTTTCAATTACTTCTTTGAAGTTTTAT
ATTAAAACCGAGATTTACCTTTGCTTTCCAAACTGGCAATAGACTATTAT
CAAATTGACATTTGTTTTAGCCTTAGCTTAGCCCTAGTAGCATTTGATTT
ATTGTTGCATATTATTTCTTCTTAGAAATTTCTAGGTATTATTATTTTAT
GCCTTATTAT Coding sequence (CDS) from alignment at sc0000378:3317..6376+ >TCONS_00021092 ID=TCONS_00021092|Name=TCONS_00021092|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000378:3317..6376+ (Clytia hemisphaerica)
ATGCAAGATGTTCATGCGACTCTCAGTAAATTGATTTTCGTGTTAACCAC
ATTGCTCGTTGGAATTTCTGTGTTTCTTGTCATTTGGATCATTCACAAGC
GAAATGGAAAAATGTTCAACGTCTCGTCCACTGGTTACTGGTTTGGACTC
ATCCTCTCAATCATTTGCTGTCTGGCGTCCAACATCGTCTTCATCGTGGA
ACCGAACAATACATTATGTGTTATTCAAACTATCGCCATCCCAGTTACCT
TGATCTATGTGCATAGCTTTGTTTTGATGAAAGCCGTACGACTGTTCTTT
TCATTTCTAGGTTTCCCTCGCTTCGCTGGTGTGATAAGTACCACCGCAAT
TGAGCTTATCATCGGTCTATCATTTCCTGTAATTGGTGGATTAATCGCTT
GCCAACAATTATTGTTAAATGGGATGGATTTGATGAAGGAACGTGTCTTC
CATAAGTTGACCACTGATGAAGAGTTTTTAGTTGTTAGCTGCACCAATGT
TAATCCGTTAATCGTCCCCATAACAGGAATTTGCGCACTCGTTACCTTGG
TTGTCAATTTTAACAGTCGAAATATAccgaatatttatgatgaaccCTGG
GATCTACTCTATTTCAGTTTGTTCTCTCTCGTCTGTCAAATATTATATGT
CGCTGTCTTTTATGCATACGACTATACCATGGCTATGGAATATTATCACG
AGGTCACGTGTGCTGTTTTTCTACTTGCCGTTTGTTTTATGGCTCTTGCA
AATTTGTTTTGTCGGAAGATTTACTTCACTATTAAAGGGTGGGAAGAACC
CTACCAAGTCCGAAATGGTATCACCGTCGACCGTTCTCAATCCTTTACTG
CCGCCCGTTGCCAAGAAACCGTCATTGGTGGCACACAAAATGAACCGCCA
GAACGTCCTTCTACTCCGCCCATGTCTATTGGTTCGCCCATGAAGAAAAC
CTATTTGAGTGATGAGGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021092-exon-sc0000378-1491911889:3317..3377 | TCONS_00021092-exon-sc0000378-1491911889:3317..3377 | Clytia hemisphaerica | exon |
| TCONS_00021092-exon-sc0000378-1510915933:3317..3377 | TCONS_00021092-exon-sc0000378-1510915933:3317..3377 | Clytia hemisphaerica | exon |
| TCONS_00021092-exon-sc0000378-1575043694:3317..3377 | TCONS_00021092-exon-sc0000378-1575043694:3317..3377 | Clytia hemisphaerica | exon |
| TCONS_00021092-exon-sc0000378-1491911889:3569..6376 | TCONS_00021092-exon-sc0000378-1491911889:3569..6376 | Clytia hemisphaerica | exon |
| TCONS_00021092-exon-sc0000378-1510915933:3569..6376 | TCONS_00021092-exon-sc0000378-1510915933:3569..6376 | Clytia hemisphaerica | exon |
| TCONS_00021092-exon-sc0000378-1575043694:3569..6376 | TCONS_00021092-exon-sc0000378-1575043694:3569..6376 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:3317..6376 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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