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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021128 ID=TCONS_00021128|Name=TCONS_00021128|organism=Clytia hemisphaerica|type=transcript|length=1130bp
GCTTTTAAAAGACAATGAGTTGGCTATGGCTAGTATTGACGATTTAAATA
TTAATGAGCTGAAGGACTTGTGTAAGAGATGTAAGATACCAGTAGCTAAC
AAATCAAAAgCTGCTTTGGTACTAGATTTGCAGCAGCTATATGGCTCGAT
AATTGTTGGAAAAAGTGATTGCCATCagtttgtaaaaactccagGACACA
CAGGGGGTTTCTATCATTTCGTTTGCCCACATGGGaCAACTGTATGCTCT
AAATTCATGGCTCTAACAGAATCTGtcagagatgctgcagatctgTGGTT
ATCATTGAAGTATCCACCGGTTCTATTTATCTGTGACACACCTTGCACAC
TAGTGCGACACATCAATCTTCGTTGTCCAGAAGAAGCTGAAAAGTACTGG
GGTGAATTTGATGGTTGCTTTGAAGTGCCAACATTAGAAAGAAATCCAAA
GAAGaaCAATGATGTTCCACAAATAGTTCCTTCAGAATTTCGAGaagcaa
atgaaaatatatCTATATCACAAGATCATAAAATTCATCCCCTAACTGGT
GAAACAAGAAGATATATTTGCGGTGATCGATTTCATAACCAAACAGAGCC
ACATAAATCTCATCTTTGTCTATTTCATGACATTGATACATCTAATCAAA
GCtcaacaataaaaacaagttttcaaGAGTCTTTAAACCATAAAAAGAAC
CTTCGTCGTAACAGAGCATCGTGTGTTCAGGATATTCTACATCACATATT
TTATAATTATCTGATGAACTACTATGATAATGAGCAAGTTGTTTCAGccc
aaaagaactttttgacagagaagtattcaaaaaaaattacacgAGATGAG
TATTTGCGTTTTAAATTATGTTGATATTGGAATAGTGAATGATTCATATT
GATTGAAGGTGAAGACAAGATAATTATGAAAGAAGTAAACATTCTAGAGt
tgaaaacgattttttttacTAATGATGTTTTATCCTTTGTTTGTAATAAT
AATGTGGTTAAGAAGTAGTTTTTTGATACACTTTTTCTGTAGTTTCCATT
CAACTATATCTTATCTGATACTACGGAATGGGGGTTATGGGGAAAAACAG
TGTTGGTATTCCAAAGATTCCTTAAATTTT Run BLAST on NCBI protein sequence of TCONS_00021128-protein >TCONS_00021128-protein ID=TCONS_00021128-protein|Name=TCONS_00021128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
LLKDNELAMASIDDLNINELKDLCKRCKIPVANKSKAALVLDLQQLYGSI
IVGKSDCHQFVKTPGHTGGFYHFVCPHGTTVCSKFMALTESVRDAADLWL
SLKYPPVLFICDTPCTLVRHINLRCPEEAEKYWGEFDGCFEVPTLERNPK
KNNDVPQIVPSEFREANENISISQDHKIHPLTGETRRYICGDRFHNQTEP
HKSHLCLFHDIDTSNQSSTIKTSFQESLNHKKNLRRNRASCVQDILHHIF
YNYLMNYYDNEQVVSAQKNFLTEKYSKKITRDEYLRFKLC Run BLAST on NCBI transcript from alignment at sc0000378:113910..116222- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021128 ID=TCONS_00021128|Name=TCONS_00021128|organism=Clytia hemisphaerica|type=transcript|length=2313bp|location=Sequence derived from alignment at sc0000378:113910..116222- (Clytia hemisphaerica)
GCTTTTAAAAGACAATGAGTTGGCTATGGCTAGTATTGACGATTTAAATA
TTAATGAGCTGAAGGACTTGTGTAAGAGATGTAAGATACCAGTAGCTAAC
AAATCAAAAGTAAGCACTCTCAAATTTGTTGCATTTTTTTTTTTGATTAA
GTGACCAAAAAAATTAAGCATTCTCTCTAAAAACATGACGTTCTGTTGGA
CAGATAACTTTACTTTTGTTCTTATAATCTATATCTTGACTCGTTTTTCT
TTTGATATCAATGATTTGTAATCAAAGGAGGCCAATTTGAAGTAATTTCT
AAAGAGTTCAATAACCACTTAGGCTAGTACAAGTTTTTAATCCATCTAAC
TTTTATTACCTCTAAGCTTGAATATAGCTATTTTGAAATAGATAGGGAAA
ATTGAATTGAAAATTTATTGTTTTTATTTGTAACTTTTTCTTCTTTAGGC
TGCTTTGGTACTAGATTTGCAGCAGCTATATGGCTCGATAATTGTTGGAA
AAAGTGATTGCCATCAGTTTGTAAAAACTCCAGGACACACAGGGGGTTTC
TATCATTTCGTTTGCCCACATGGGGTAAGAAATTAATAGTTTTATGCTCA
ATCATAGTCATTAAGGCCGGGGCAAACCGATCCAACATTTCATCCAACAT
GCCTTTTTTCTGATGTTGGATGAAATGTGGACCAGTTTTCGTCAATTCAA
ATTTTTGGAAAAAAATGAAAATTCAAAAAAAGAAAAAAATTGTGCTGGAT
GAAGTTTGATCAAACATTTCATCCAACACTTTTGGCAAGATCAAAGAAAT
CTCTCTCATTGAATTTTGTAATTTTTTGTGTTGGATTAGTACTTTTCTTC
CAACATGTCAAAGAGCTGCAAATTTTGAACAACGAAACGTTCAAATTTGA
CAATGGAATGTTTTAAAAATATTTGAAATAGAGAATGGGGATATCACATG
GGATACTTTGTTTAATACAAAATACCCCACATCCATTCGAAACATTTCCC
TGAAGCCAAGTATGTCCATGATTTTTAGCTTTTAAAGTCCCACAAACCTG
AAATCTTGCTCCATCCAACGCGAGTTTTTCCATCCAACATTTCATCCAAC
TTTGGAAAATCATGTTGGATGAAATGTTGGACTGGTTTGCCCTGGCCTTT
ATAATTCTTTTATCTCAGATAATCAATAATCAATAGAGGGTATTGTTTGT
CTTTAAAACAAGAAACTGCTTTGAACACAACTTAAACTTTTGAATATTTT
AGACAACTGTATGCTCTAAATTCATGGCTCTAACAGAATCTGTCAGAGAT
GCTGCAGATCTGTGGTTATCATTGAAGTATCCACCGGTTCTATTTATCTG
TGACACACCTTGCACACTAGTGCGACACATCAATCTTCGTTGTCCAGAAG
AAGCTGAAAAGTACTGGGGTGAATTTGATGGTTGCTTTGAAGTGCCAACA
TTAGAAAGAAATCCAAAGAAGGTGATTCTTTGAACTTTGAATGTTATTTA
ATAATCAGTCTTTTTTTTTAAACCAAAATGTAGGAAATCTGTAAATCTTA
TTAGGCCGTGGCTGGGTCTTATGGGATTTTTCTGACTAGAGACTTGAAAA
GCTGATAATTAATTGTAATTTTTTAAATAATTTTTAGAACAATGATGTTC
CACAAATAGTTCCTTCAGAATTTCGAGAAGCAAATGAAAATATATCTATA
TCACAAGATCATAAAATTCATCCCCTAACTGGTGAAACAAGAAGATATAT
TTGCGGTGATCGATTTCATAACCAAACAGAGCCACATAAATCTCATCTTT
GTCTATTTCATGACATTGATACATCTAATCAAAGCTCAACAATAAAAACA
AGTTTTCAAGAGTCTTTAAACCATAAAAAGAACCTTCGTCGTAACAGAGC
ATCGTGTGTTCAGGATATTCTACATCACATATTTTATAATTATCTGATGA
ACTACTATGATAATGAGCAAGTTGTTTCAGCCCAAAAGAACTTTTTGACA
GAGAAGTATTCAAAAAAAATTACACGAGATGAGTATTTGCGTTTTAAATT
ATGTTGATATTGGAATAGTGAATGATTCATATTGATTGAAGGTGAAGACA
AGATAATTATGAAAGAAGTAAACATTCTAGAGTTGAAAACGATTTTTTTT
ACTAATGATGTTTTATCCTTTGTTTGTAATAATAATGTGGTTAAGAAGTA
GTTTTTTGATACACTTTTTCTGTAGTTTCCATTCAACTATATCTTATCTG
ATACTACGGAATGGGGGTTATGGGGAAAAACAGTGTTGGTATTCCAAAGA
TTCCTTAAATTTT Coding sequence (CDS) from alignment at sc0000378:113910..116222- >TCONS_00021128 ID=TCONS_00021128|Name=TCONS_00021128|organism=Clytia hemisphaerica|type=CDS|length=3492bp|location=Sequence derived from alignment at sc0000378:113910..116222- (Clytia hemisphaerica)
AACAATGATGTTCCACAAATAGTTCCTTCAGAATTTCGAGAAGCAAATGA
AAATATATCTATATCACAAGATCATAAAATTCATCCCCTAACTGGTGAAA
CAAGAAGATATATTTGCGGTGATCGATTTCATAACCAAACAGAGCCACAT
AAATCTCATCTTTGTCTATTTCATGACATTGATACATCTAATCAAAGCTC
AACAATAAAAACAAGTTTTCAAGAGTCTTTAAACCATAAAAAGAACCTTC
GTCGTAACAGAGCATCGTGTGTTCAGGATATTCTACATCACATATTTTAT
AATTATCTGATGAACTACTATGATAATGAGCAAGTTGTTTCAGCCCAAAA
GAACTTTTTGACAGAGAAGTATTCAAAAAAAATTACACGAGATGAGTATT
TGCGTTTTAAATTATGTTGAACAACTGTATGCTCTAAATTCATGGCTCTA
ACAGAATCTGTCAGAGATGCTGCAGATCTGTGGTTATCATTGAAGTATCC
ACCGGTTCTATTTATCTGTGACACACCTTGCACACTAGTGCGACACATCA
ATCTTCGTTGTCCAGAAGAAGCTGAAAAGTACTGGGGTGAATTTGATGGT
TGCTTTGAAGTGCCAACATTAGAAAGAAATCCAAAGAAGGCTGCTTTGGT
ACTAGATTTGCAGCAGCTATATGGCTCGATAATTGTTGGAAAAAGTGATT
GCCATCAGTTTGTAAAAACTCCAGGACACACAGGGGGTTTCTATCATTTC
GTTTGCCCACATGGGCTTTTAAAAGACAATGAGTTGGCTATGGCTAGTAT
TGACGATTTAAATATTAATGAGCTGAAGGACTTGTGTAAGAGATGTAAGA
TACCAGTAGCTAACAAATCAAAAAACAATGATGTTCCACAAATAGTTCCT
TCAGAATTTCGAGAAGCAAATGAAAATATATCTATATCACAAGATCATAA
AATTCATCCCCTAACTGGTGAAACAAGAAGATATATTTGCGGTGATCGAT
TTCATAACCAAACAGAGCCACATAAATCTCATCTTTGTCTATTTCATGAC
ATTGATACATCTAATCAAAGCTCAACAATAAAAACAAGTTTTCAAGAGTC
TTTAAACCATAAAAAGAACCTTCGTCGTAACAGAGCATCGTGTGTTCAGG
ATATTCTACATCACATATTTTATAATTATCTGATGAACTACTATGATAAT
GAGCAAGTTGTTTCAGCCCAAAAGAACTTTTTGACAGAGAAGTATTCAAA
AAAAATTACACGAGATGAGTATTTGCGTTTTAAATTATGTTGAACAACTG
TATGCTCTAAATTCATGGCTCTAACAGAATCTGTCAGAGATGCTGCAGAT
CTGTGGTTATCATTGAAGTATCCACCGGTTCTATTTATCTGTGACACACC
TTGCACACTAGTGCGACACATCAATCTTCGTTGTCCAGAAGAAGCTGAAA
AGTACTGGGGTGAATTTGATGGTTGCTTTGAAGTGCCAACATTAGAAAGA
AATCCAAAGAAGGCTGCTTTGGTACTAGATTTGCAGCAGCTATATGGCTC
GATAATTGTTGGAAAAAGTGATTGCCATCAGTTTGTAAAAACTCCAGGAC
ACACAGGGGGTTTCTATCATTTCGTTTGCCCACATGGGCTTTTAAAAGAC
AATGAGTTGGCTATGGCTAGTATTGACGATTTAAATATTAATGAGCTGAA
GGACTTGTGTAAGAGATGTAAGATACCAGTAGCTAACAAATCAAAAAACA
ATGATGTTCCACAAATAGTTCCTTCAGAATTTCGAGAAGCAAATGAAAAT
ATATCTATATCACAAGATCATAAAATTCATCCCCTAACTGGTGAAACAAG
AAGATATATTTGCGGTGATCGATTTCATAACCAAACAGAGCCACATAAAT
CTCATCTTTGTCTATTTCATGACATTGATACATCTAATCAAAGCTCAACA
ATAAAAACAAGTTTTCAAGAGTCTTTAAACCATAAAAAGAACCTTCGTCG
TAACAGAGCATCGTGTGTTCAGGATATTCTACATCACATATTTTATAATT
ATCTGATGAACTACTATGATAATGAGCAAGTTGTTTCAGCCCAAAAGAAC
TTTTTGACAGAGAAGTATTCAAAAAAAATTACACGAGATGAGTATTTGCG
TTTTAAATTATGTTGAACAACTGTATGCTCTAAATTCATGGCTCTAACAG
AATCTGTCAGAGATGCTGCAGATCTGTGGTTATCATTGAAGTATCCACCG
GTTCTATTTATCTGTGACACACCTTGCACACTAGTGCGACACATCAATCT
TCGTTGTCCAGAAGAAGCTGAAAAGTACTGGGGTGAATTTGATGGTTGCT
TTGAAGTGCCAACATTAGAAAGAAATCCAAAGAAGGCTGCTTTGGTACTA
GATTTGCAGCAGCTATATGGCTCGATAATTGTTGGAAAAAGTGATTGCCA
TCAGTTTGTAAAAACTCCAGGACACACAGGGGGTTTCTATCATTTCGTTT
GCCCACATGGGCTTTTAAAAGACAATGAGTTGGCTATGGCTAGTATTGAC
GATTTAAATATTAATGAGCTGAAGGACTTGTGTAAGAGATGTAAGATACC
AGTAGCTAACAAATCAAAAAACAATGATGTTCCACAAATAGTTCCTTCAG
AATTTCGAGAAGCAAATGAAAATATATCTATATCACAAGATCATAAAATT
CATCCCCTAACTGGTGAAACAAGAAGATATATTTGCGGTGATCGATTTCA
TAACCAAACAGAGCCACATAAATCTCATCTTTGTCTATTTCATGACATTG
ATACATCTAATCAAAGCTCAACAATAAAAACAAGTTTTCAAGAGTCTTTA
AACCATAAAAAGAACCTTCGTCGTAACAGAGCATCGTGTGTTCAGGATAT
TCTACATCACATATTTTATAATTATCTGATGAACTACTATGATAATGAGC
AAGTTGTTTCAGCCCAAAAGAACTTTTTGACAGAGAAGTATTCAAAAAAA
ATTACACGAGATGAGTATTTGCGTTTTAAATTATGTTGAACAACTGTATG
CTCTAAATTCATGGCTCTAACAGAATCTGTCAGAGATGCTGCAGATCTGT
GGTTATCATTGAAGTATCCACCGGTTCTATTTATCTGTGACACACCTTGC
ACACTAGTGCGACACATCAATCTTCGTTGTCCAGAAGAAGCTGAAAAGTA
CTGGGGTGAATTTGATGGTTGCTTTGAAGTGCCAACATTAGAAAGAAATC
CAAAGAAGGCTGCTTTGGTACTAGATTTGCAGCAGCTATATGGCTCGATA
ATTGTTGGAAAAAGTGATTGCCATCAGTTTGTAAAAACTCCAGGACACAC
AGGGGGTTTCTATCATTTCGTTTGCCCACATGGGCTTTTAAAAGACAATG
AGTTGGCTATGGCTAGTATTGACGATTTAAATATTAATGAGCTGAAGGAC
TTGTGTAAGAGATGTAAGATACCAGTAGCTAACAAATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021128-exon-sc0000378-1575043694:116114..116222 | TCONS_00021128-exon-sc0000378-1575043694:116114..116222 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1575043694:115649..115774 | TCONS_00021128-exon-sc0000378-1575043694:115649..115774 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1575043694:114752..114970 | TCONS_00021128-exon-sc0000378-1575043694:114752..114970 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1575043694:113910..114585 | TCONS_00021128-exon-sc0000378-1575043694:113910..114585 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1510915933:116114..116222 | TCONS_00021128-exon-sc0000378-1510915933:116114..116222 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1510915933:115649..115774 | TCONS_00021128-exon-sc0000378-1510915933:115649..115774 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1510915933:114752..114970 | TCONS_00021128-exon-sc0000378-1510915933:114752..114970 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1510915933:113910..114585 | TCONS_00021128-exon-sc0000378-1510915933:113910..114585 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1491911889:116114..116222 | TCONS_00021128-exon-sc0000378-1491911889:116114..116222 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1491911889:115649..115774 | TCONS_00021128-exon-sc0000378-1491911889:115649..115774 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1491911889:114752..114970 | TCONS_00021128-exon-sc0000378-1491911889:114752..114970 | Clytia hemisphaerica | exon |
| TCONS_00021128-exon-sc0000378-1491911889:113910..114585 | TCONS_00021128-exon-sc0000378-1491911889:113910..114585 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:113910..116222 - |
Blast
BLAST of TCONS_00021128 vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.325e-20 Identity = 73/272 (26.84%), Postives = 123/272 (45.22%), Query Frame = 2
Query: 2 LLKDNELAMASIDDLNINELKDLCKRCKIPV-ANKSKAALVLDLQQLYGSIIVGKSDCHQFVKTPGH-TGGFYHFVCPHGTTVCSKFMALTESVRDAADLWLSLKYPPVLFICDTPCTLVRHINLRCPEEAEKYWGEFDGCFEVPTLERNPKKNNDVPQIVPSEFREANENISISQ-DHKI-HPLTG-ETRRYICGDRFHNQTEPHKSHLCLFHDIDTSNQSSTIKTSFQESLNHKKNLRRNRASCVQDILHHIFYNYLMNYYDNEQVVSAQ 802
LL++ + I + +L+ L ++C IP A SK L L LY S+ G + ++ P H TGG + VCPH SK++ ES RD DL S ++ P +++ D ++ +L PE + WG GCF PT P + P+++ + + +++ +H I HP+T TRR + N +P H H + + + T ++ K N R R + H+ YN LM++ + ++V+ Q
Sbjct: 1238 LLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGA----RAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDMATSVALCADLCYPELTNQMWGRNQGCFSSPT---EPPVSVSCPELLDQHY-----TVDMTETEHSIQHPVTKTATRRIVHAGLQPNPGDPSAGH----HSLALCPELAPYATILASIVDSKPNGVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQ 1493
The following BLAST results are available for this feature:
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