TCONS_00021131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021131
Unique NameTCONS_00021131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021131 ID=TCONS_00021131|Name=TCONS_00021131|organism=Clytia hemisphaerica|type=transcript|length=651bp
CATAGATTGTGATCTAAAGAAACTTCCACTGCGAGGAAAAGATGGTGCAA
GGGTTGTAGACGCAAAATATCATGCACATAAATTACGTTGTGAAGAATCA
GAGACAGTGTTCTTAAAAAGggaGAAAGGTTTGGAAAAGCAGTGTAGATA
CAAATGTAAAAGGTGTGGCCTGCTATTGTTCTCTCGACAcgataaaaaaa
ccaaaattaCTTTCATCGTTGATGGGGCTGTTGTGAAAGGTAAGACTGAA
GAGAATCCCTCACTATTGAAGAAACAACCGCAAGCTAAAAAGGTTATGGT
AAAGAAACATACGAAAGAAATGGGGAAATTTGGATCAGTCACTGTTTCAA
CCgtcgatgaagaagaagaagaactaGAAGCTGCTGAAATCGCGTCTTCT
TATGCACAAAATGCAAGGATCATTTCCCAACAATTAACAAAGAGAAGAAC
AGCTCAACAAAAACTTACAGAAGAAGAGGCAGGAAAAGCAAAGAAACCAC
GTGGTACACTGATCGACAAATGAGGTGAGAGATATCGCATCACGTGATTT
GGTTTATAACCAATGGTTGACCAGGAATTTTTGGCTTTTGTTTATTCAAT
GGAAATATTGAAGATGTGAATAACACATTGATAGAACAACATTAATTTCA
C
Run BLAST on NCBI

transcript from alignment at sc0000378:175192..180136-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021131 ID=TCONS_00021131|Name=TCONS_00021131|organism=Clytia hemisphaerica|type=transcript|length=4945bp|location=Sequence derived from alignment at sc0000378:175192..180136- (Clytia hemisphaerica)
CATAGATTGTGATCTAAAGAAACTTCCACTGCGAGGAAAAGATGGTGCAA
GGGTTGTAGACGCAAAATATCATGCACATAAATTACGTTGTGAAGAATCA
GAGACAGTGTTCTTAAAAAGGTACCTTTTTGAAAGTATATTGAATGTTGC
CCCTTTGGACCAAAATCGAAGGATAATAATGATGATGCATTGTTATCAAT
GGTTTTACGTTTATTTAAATTTGATTAATGAAAAGAAAAAAATATTACAA
CTACTGAAAACTCTGGAAAACTCCCTACCGTTTCTGGAGAACCATACTAA
AGTTCTGTGTTCAATTTGAATGTTTATTCTATTGAACAACAAATAAGATG
ATCTTTTGGTATTTACAAACTTTTCTTTAAAGCCAAAGTTTCCCCTGATC
AAGTTTGTCTTTGAAAATGTTTTCCTTGATTTAGAGTTTTATTTTATTAT
AATTTTCTTTGATTTGAAACTAAAATGTGCTTATGAATGATTCTTCTAAA
ATTTTTCTTTTTAGGGAGAAAGGTTTGGAAAAGCAGTGTAGATANTGTGC
TTATGAATAATTCTTCTAAAATTTTTTATTTTAGGGAGAAAGGTTTGGAA
AAGCAGTGTAGATACAAATGTAAAAGGTTTGATGTATTTATTTTCTTAAT
TTTATTCTTTATCTCCCAGCTTGAAATACCTTTTCCAGCTTTATTCCATT
CCTTCTCTTAGTTAGCGGCCCTAGCCTCTCTGTTTGATGCTCGCAGCAAC
TAAAAAGGGGGGTCAAGGCTAAGCTGAGAAATACACTTTCGACTGCCCTC
GACTGCAGTCAGAAACTTATTTTACTTAAAATTACTCCAAGTCTCTATAT
TACTTGTGCACCCTCCTACTAATCAAAGGGGGTTTTTGATTTCATTTTAC
TATACAGAACTCTCTTTTAAACTCATTAATGTTATGTCTATTTATATTTC
TCCTTTTCTTGCTAGGTGTGGCCTGCTATTGTTCTCTCGACACGATAAAA
AAACCAAAATTACTTTCATCGTTGATGGTAAGTTTATCGTCCATTCGTGT
GAGGAATTCAAAGTGAAAAAATTTAAAATTTTACCTAAGTATAAACTAGC
AGAATATGTATGACAATTTGAGGATGCTTTTTTCTTGATGTTACATTTTT
CATATTCAGGGGCTGTTGTGAAAGGTAAGACTGAAGAGAATCCCTCACTA
TTGAAGAAACAACCGCAAGCTAAAAAGGTTAGTATGATTATAGTGGAGTC
TCCATAACTTGAACTCGCACGGGGAACACAAATTTGTCCGAGTTAAAGAA
ATTTCGAATTATGGAGTAAAGTTTATAAGACATTGTTGATTAAAGGGACC
AGGAAACTTGTTCAAAGTCTTTCAAGTTAAGGAGACATTCGAGTTATAGA
GGTTCAAGTTATGAAAACTCCACTGTACAATAATTAATTTCTCTACAGCA
AGCCTCCCCACTATTTTAAACCAATTTCAATACTGTAGCATCCTTTTTCA
ACCTGCAATTGACTTCGGGTCGTTTGAAGGCACCCCATCTGGTTATAGAA
TTTAAAAAGACTTTGATTGAACCTTGCCTGGATATCATTTGAACCAAACA
ATTTGAGTAGTGGAGACAAATGAAGTTCTTGTTTATACCCAATTACCAAG
TAAGCAAAAAGAGTATTTGTATAAAATTCAGCAATGAGCACTCTCGGGTA
CCTAATAAGCGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAAAAAAAAAAAATGAAAAA
CCATGAAAACGAAAAACCATAAAAACGTAAATTAACTTGTCACTCCATTT
TAACAACAAATTTAGGTTATGGTAAAGAAACATACGAAAGAAATGGGGAA
ATTTGGATCAGTCACTGTTTCAACCGTCGATGAAGAAGAAGAAGAACTAG
AAGCTGTAAGTGATGTCTATTTTACAGACCAAACTATTTCCTGACTAAAA
AATTATCTCCCTCCAAAAGTAAAGTATACCAAGGTTGAACTTATAAACAG
AAATAATGCGTTAATTAGCGTCCATTCAGGTCCTAAAACTCTTTATAGTG
GCTCAATCTCACCCCGCCTTAGCAAGATTGTGAATCCAGTTGATCTTGTG
TCAACTTTATAGATAGGATTGAAGTTAAAAGTTGATATTGATTAGCCTCG
AGCTAAGTACAATTTGGACTACTTTACATCAACTTTAAAGAAAAGAAACA
TAAACACATAAACTCCTCGGCTAAACGTCTTAGACTATGATCCTTTCGTA
GATAGATTTCTACTCTTTGTTTGAAACTTAAAGGGGCTTTCAAAGAATAT
ATTTTTTTTTACGTTCAAAGGCTGAAATCGCGTCTTCTTATGCACAAAAT
GCAAGGATCATTTCCCAACAATTAACAAAGAGAAGAACAGCTCAACAAAA
ACTTACAGAAGAAGAGGCAGGAAAAGCAAAGAAACCACGTGGTACACTGA
TCGACAAATGAGGTGAGAGATATCGCATCACGTGATTTGGTTTATAACCA
ATGGTTGACCAGGAATTTTTGGCTTTTGTTTATTCAATGGAAATATTGAA
GATGTGAATAACACATTGATAGAACAACATTGATATTTATTCAAAATCGT
AAGACATTAATTTCACCAATGTAAACGCATATTGAAATTGTTATTAAGAC
TAATTGCGGCAGGCTCTGAGTTTCAGAAAAAAACTATTGAGAAGTGGCTG
TGGTACAAACAGAAAACATTGGTGAGATATTGTGTGTATTTCGACGGAAT
TATTTTTAAGCCAATGTTTTGTTGATTCTTGAACAGAGAGAGAAAGAAGT
TTTAAAAATAAACTGATTTTAGTCCTTGAAGTATAACCCCTCCCATGGAA
TATTTCAAGATTATGAGATACTCAAAAAAGTTGTTTTGAATGTTTGAAGG
TACTCCTAATACTCGACGCCATTCTTTAAGATGCGCGTCACCCGACCAGA
GGTACTTAAATCTGTAGAAAAACGAATCTTGCATCAGTCATTAAATTGTT
TGTTTTGATTATGTGTCATCGTGTTCATAGACAACTATAGAAATGTAAAA
CTTCAAATAAATTCAATCTGAAAAAAAGCTAAACCATTATCCCTTTTTTA
TAGTAAATTCCTTTGGGCCAATCAATTTAGAAAGGTTTAAGGAGAATTAG
AAGGAATTCAAAATGTTTTTTAAAGGGTACATAAAATAAAACATAAAATG
GAAAGGTAAATCTTTTTCCAAAAAAAAATATGATTAGATTGAATTTTTGT
TAAGTATTTGAGGTTATGATAAGTATGGATTTATTTTAGTTGACAGTATT
ATTCTTTTCATTCGGTGTACCAATTTCTTTTCGACCGTAGATACCAATTG
CCGCGCGGGCATTTTTTTGTCCGCTTTATCCCACTAAAACCGTCCCAGTC
CTTTTTTCGCACCAATAGACAATAGAAAAATGCGNAATAACACATTGATA
GAACAACATTGATATTTATTCAAAATCGTAAGACATTAATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011837XLOC_011837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021131-exon-sc0000378-1575043694:180017..180136TCONS_00021131-exon-sc0000378-1575043694:180017..180136Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1575043694:179511..179552TCONS_00021131-exon-sc0000378-1575043694:179511..179552Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1575043694:179110..179171TCONS_00021131-exon-sc0000378-1575043694:179110..179171Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1575043694:178910..178977TCONS_00021131-exon-sc0000378-1575043694:178910..178977Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1575043694:176782..176871TCONS_00021131-exon-sc0000378-1575043694:176782..176871Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1575043694:176109..176366TCONS_00021131-exon-sc0000378-1575043694:176109..176366Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1575043694:175192..175202TCONS_00021131-exon-sc0000378-1575043694:175192..175202Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:180017..180136TCONS_00021131-exon-sc0000378-1510915933:180017..180136Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:179511..179552TCONS_00021131-exon-sc0000378-1510915933:179511..179552Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:179110..179171TCONS_00021131-exon-sc0000378-1510915933:179110..179171Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:178910..178977TCONS_00021131-exon-sc0000378-1510915933:178910..178977Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:176782..176871TCONS_00021131-exon-sc0000378-1510915933:176782..176871Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:176109..176366TCONS_00021131-exon-sc0000378-1510915933:176109..176366Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1510915933:175192..175202TCONS_00021131-exon-sc0000378-1510915933:175192..175202Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:180017..180136TCONS_00021131-exon-sc0000378-1491911889:180017..180136Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:179511..179552TCONS_00021131-exon-sc0000378-1491911889:179511..179552Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:179110..179171TCONS_00021131-exon-sc0000378-1491911889:179110..179171Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:178910..178977TCONS_00021131-exon-sc0000378-1491911889:178910..178977Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:176782..176871TCONS_00021131-exon-sc0000378-1491911889:176782..176871Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:176109..176366TCONS_00021131-exon-sc0000378-1491911889:176109..176366Clytia hemisphaericaexon
TCONS_00021131-exon-sc0000378-1491911889:175192..175202TCONS_00021131-exon-sc0000378-1491911889:175192..175202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:175192..180136 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.3302	62.3276	67.2125	71.6029	17.5376	17.5212	16.6311	27.9346	30.4845	28.4348	37.2307	27.9982	17.12	20.7794	22.7646	21.8333	30.5639	28.4493	15.9295	11.5131	16.1546	14.4118	22.2756	29.2652	25.7186	12.7119	9.53698	9.1577	15.1511	15.9202
Blast
[Close]
BLAST of TCONS_00021131 vs. Swiss-Prot (Human)
Match: CX056 (UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.609e-42
Identity = 100/184 (54.35%), Postives = 128/184 (69.57%), Query Frame = 2 
Query:    2 IDCDLKKLPLRGKDGARVVDAKYHAHKL-RCEESETVFLKREKGLEKQCRYKCKRCGLLLFSR-HDKKTKITFIVDGAVVK-----GKTEENPSLLKKQPQAKKVMVKKHTKEMGKFGSVTVSTVDXXXXXXXXXXXXSSYAQNARIISQQL-----TKRRTAQQKLTEEEAGKAKKPRGTLID 517
            +DC L+KLP+R +D +RV+DA  HAHK    E+ ET++L+R +G+E+Q R KC +CGL LF +   K   +TFIVDGAVVK     GKT       +KQ   KKVM+ K TK+MGKF SVTVST+DEEEEE+EA E+A SYAQNA++I +QL     +KRR   Q+L E EA KAK  +GTLID
Sbjct:   41 LDCQLEKLPMRPRDRSRVIDAAKHAHKFCNTEDEETMYLRRPEGIERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGAVVKFGQGFGKTN---IYTQKQEPPKKVMMTKRTKDMGKFSSVTVSTIDEEEEEIEAREVADSYAQNAKVIEKQLERKGMSKRRL--QELAELEAKKAKM-KGTLID 218
The following BLAST results are available for this feature:
BLAST of TCONS_00021131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CX0561.609e-4254.35UPF0428 protein CXorf56 OS=Homo sapiens GN=CXorf56... [more]
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