TCONS_00021134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021134
Unique NameTCONS_00021134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021134 ID=TCONS_00021134|Name=TCONS_00021134|organism=Clytia hemisphaerica|type=transcript|length=2594bp
GCTTGAAATGGCAGGGAGATAACGATGAAAAACCAGTCGAAAAATGTGAA
GAATCAAATGATGAAGAGGAAGATGAGTGTTTGTCTGGTGATGATGGAAT
TATTACAGCTGACGAAGTACCAATCATCAGGCCAAGTGACAGTGAACTTG
AAAAATCGCGAAAACAAAAGATCAGGGAAAAGATGACAGGGATTGTCATC
AAAGACATTGCAACTTATCTTATTTTTCTGTTGATTGTGGCAAAGCTTGC
TTACATGGAGAAGGACTTTCACACCTACATCTATCGACAGGACATGGTCA
ACATGTTGAAAGAAGCTACATACACCTTCGGACCGAAATTTGAATCTaTA
TCAAACCATGGATATTTTTATTCCTGGATGAGAGACACGTTAATCCCAGG
AGTTTTTGCAGGTCCTTGGTACAACGATGATCTGGTCAAACATCAAGGCT
TTATTGATAACCATGAAAGTTTTCTTGTCAGTATACCGCGAATACGACAA
GTTCGCGTTCAAGAAAaCTCGTGTCCATTACCTTCTATCTTCGACGGTGT
TATCAATCATTGTGAAGCCACTTACAAAGGTTCTCTAGAAGATCAAGTAG
ATTATGGTATTGCTTGGGTGGACCTAAACATGACCATAACGGCTCCATCG
GCCTCAAGACGTAGACGGTCCCCATGGATCGTTCGAAATATCAAACAAAT
AACGACGACAGAGAATATTCGTAAACGAAAACGACGTCAAACGACAACTG
AGGAAACTGGTGGAATGCAATACCAAAAAATGGATACTGGAAAATCTGGT
TCTTTACGGCGAcgaaagaaactgaaaaatcaacaaaacggCGCTCCTAT
TTATTACGTATCACCAGAAGCGCTACTCCCGGATGGAAGTGTCGTATCTT
GTTTTGACCGTTGGGAACATTTCTCGGCTTCAGAGCTACGCGGTTTTCCG
GTTGTTGGCCGAACAAATACCTACCCAGGGAGTGGATATGTTGCAAATCT
AGGCTACAATGAGGAAACGAGTTGGACGGTTTTAGCTGATTTGCATATTC
ATAATTGGTTGGATAAACAGACGAGAGCCATTTTCGCAGAATTTACTGTT
TATAACGGAAATGTCAACTTGTTTATGACTGCTTTCCTATATCTAGAAAC
TTTACCAACTGGTGGTGCTTTTCCTTGGTCAGACTTCAAAGTATTCAACG
GATATCGATATTCAGCTAAAGACGGGCTACAATCAATGTGGGCTGAAAtg
attttcatttgtttcatcatCTATTTCGGTGTCATTGAAATACGTAAAAT
GTTGAAACTGAAATTCAATTActtcaaaagctttttcaatCTGATCGAAG
CTACGTTGATGCCATTGTATTTGGTAATGTTCGCGTTGATTCTGATACGT
TGGTTAACTACCTCAgcaaacatcaaaacattcaagcAGAATCCAAAAGA
CTTTGTCAGTTTCCAGTATGCGGCCGCAGCAGACGAAGCTTTAATGTCTG
TCATCGGAATAGTGTGCTTCCTGCTAAACCTCAAATTTTTAAGACTACTT
CAGTTcgcaaaactattttttgttATTGGACAAGTTATCAAAAGTTTTAC
AGTACCTCTCTTATATTTCATGGTGCCTTTTACAATGTATTTCTTACTTT
TCTGTTGGAGCGCACATCTGGCTTTTGGCAACCAACTCGAAGAATTCCAA
ACTATACCTCGGACTATTACGACTCAGTTCTTGCATCTGTTAGGTGCAAC
GGACTTTGAAAGTATCACAGACGCTCGCCCTGTAGTTGGTTCTTTATATT
TCTTAGCCTACAGTGGATTCATGTTATTTGTAGCTTTTAATATGTTCATG
GCAATCATCTGTGAAGCGATTGATGACGATTTTGACGAAGAGTTTGAAAA
ACAGGCTGGTGATATACAAGTGGCTGAATATTTTACTAATAAGTTGAAAT
TATTGTTAGGTCGTAATATCGATGATGAAATACGCATCGATGGTGATGAT
GTTAATGAAAAAGCAGACTCACAAAAGttgattgaaattgaagaaatttt
gatgacatttgaaaaaagtttgtcacGATTGGATTCGTTTGTTGACGCGA
TTCACGAGGATTTCGAAAGTGAAAAACAATGTACTGAAATGTGTGATATG
CTGGTAGAAACATCTCTGTCGTCTTCTGGTGGTACTGAAGAAACCCAAGA
CCAAAATATTTCAACTCATTTTAACGAAGCAGAGACACTGGACGATGTTT
TTGATGAATCGTTTGCCAGTCTAGATACTGTCAGTGAAATCatagaactt
taaaaaaataatcttaTTTCAATTGTGAAGATCCTTTAAATTCGACATTT
ATTATACAAATAGCATTATGTAAATTTATTTAATACACTATTTTACACGC
AAATATGGATATATGACTACaatctaccgggtgacccacgaaaaagtata
agagtttggagggtaactgtgtccgaaaaaaattgaattttaactaaatt
cttttttcatggtAAAGAGGGAAGGCAAACTTAAACtttgatgtatcatt
ttttaattttggaaaattagttatcgagatatggaggtataaag
Run BLAST on NCBI

transcript from alignment at sc0000378:191079..195726-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021134 ID=TCONS_00021134|Name=TCONS_00021134|organism=Clytia hemisphaerica|type=transcript|length=4648bp|location=Sequence derived from alignment at sc0000378:191079..195726- (Clytia hemisphaerica)
GCTTGAAATGGCAGGGAGATAACGATGAAAAACCAGTCGAAAAATGTAAG
ACTCGTTCTATTGATAAGGTCTTCATAATGGGCCACTCCATTTTTATTCA
TACATGGGGTGGACGAAGATTTCCAGGGGGTAACCCGAGAGGAATTTCCA
GGGGCTCTAAAGGAATGTTTTTTTCATGTGTCTAGGGGGAAAAAATCTAT
TCTAAAATTACCAGGGGGTAGAAGACTAGTTTTAGTTTGTCCACTGTCAC
TTTAAAGTATATGAAAAGAATTTTTCCAATGGTTTTTCCAGAGGGTATCC
ACATATTTCAAAGAAAAGGTTTGTCTGTTTGCCCCCTGGTTTTTTAATAG
AACACCCCAATACTAGTCGTTAAATATTTGAGATACTGCTCACAAATTTC
AAATTAAAGAATACGTCAGAGACAGCCAATATACGTATGTGGAAAACTTT
CTGAAAATCATCTTTCACTTTGAAATTTCAGGTGAAGAATCAAATGATGA
AGAGGAAGATGAGTGTTTGTCTGGTGATGATGGAATTATTACAGCTGACG
AAGTACCAATCATCAGGTTAGTAATTTCTTTTGCTTTTTTACTGAACGAG
CAATTACATCTTCCATTTGGTGACGGGGGACGGCTGAATGTTAGAAGGAC
TCTAGTTTGGACCCTTTTTTTAAAGACGGATCCAACTTTTCAGATCAATG
ATTTTACTATCATAAGATGTCTACCTTCAATCCATCTAAGGTGGAATTAT
AAGTCGTCACTAATACAATAATGACCGGTTAGTGAGGGCTGTACTGAGAA
ATATTGCCCGAGGTCAAGTAACGACCGAGCTTGCGAGGTTGTTGCGTTGA
CCCGAAAAAAAAAATTACTAACCTGATGATCATAATATTACTTATCAGAT
TCTTACATCAGNGAAAAAAGAAATTACTAACCTGATGATCATAATATTAC
TTATCAGATTCTTACATCAGTAAAAAGATCAATCTGTAATTATATGTTGT
TATTTTATAAGAATATCCAAATTTTTTGAAAGCCTACGGATGTTCTTAAC
TTTTTGAGCTTAAAACCTAAAAATGTTCTTAACATGTTCTTATTTTCCCC
ATTTTGTGAATATTTTTCTCAATTTACTAAAGAAATCGGGTGTTTTAGGG
TCTCCGGAGCCTTAAAATGTTCTTAACTTGTTCTCAACATTTTTGCTATC
TTAACCTCGTGTTCTTGTATAGTTTATTCTTATAAAAAACGTATATTTTC
ACGTGTATTTTTTCCAATAACAGGCCAAGTGACAGTGAACTTGAAAAATC
GCGAAAACAAAAGATCAGGGAAAAGATGACAGGGATTGTCATCAAAGACA
TTGCAACTTATCTTATTTTTCTGTTGATTGTGGCAAAGCTTGCTTACATG
GAGAAGGACTTTCACACCTACATCTATCGACAGGACATGGTCAACATGTT
GAAAGAAGCTACATACACCTTCGGACCGAAATTTGAATCTGTAAGACTTC
GCTTTAAAACGCATGAATGAATGTTGATTAACTAGAGGCATTTTTTACCC
ATTTATTCTTTTGATACAAAGGAGACTTCGAAACTAGAAAAAATCAAAAA
AAAAATCGAATAACTGAGAGGATTTCTAGCGTACCTACAGTGTAAAGGGT
TCAGAGCTGCCACTTTCGATAATTGAAATTTTTGGGGAGGGGTTTCGATA
ACTGAATGGTGGATAGACTATTCATATTTTATACGGATCCACCTGTAGAA
TACACCGGATGTTTGCTAATCATTTTGAAATTGAAAATATCAGGGGTATT
TTTTGGCGTTCCCGTATAGAAAATTACGTCATGAATACCATAAAAACACA
TTAGAATGTTAGTAGTGTTTTCTTACTGGCTTTCTTTTTCTTTCCAGATA
TCAAACCATGGATATTTTTATTCCTGGATGAGAGACACGTTAATCCCAGG
AGTTTTTGCAGGTCCTTGGTACAACGATGATCTGGTCAAACATCAAGGCT
TTATTGATAACCATGAAAGTTTTCTTGTCAGTATACCGCGAATACGACAA
GTTCGCGTTCAAGAAAGTGAGTTTGGATTTTATGGAACCTTTTTTATTAA
TTTTATAATGTCGAACATTTTGTTATAACCCCAGGGGGTTATAATTAAGT
TAAATTAGGCATTTGAAATCGGACCTTAACAGTGCACTTTGGGAAGCTGG
GAAAAGGACCCTTAAGGGCGGCACGTACGGTAGCTCCTTTACCTTAAGTG
CCCTCCCCCGGGCTATAACTCACAACTCAACCTTTCCTCACTAAAAAGAA
TTAGATTTCTCAATATCATAAACAAATCTAGGCTTCTGCTCATCCTCTAG
CGAAAAAAGTTTCTTATATATATATGGAGTATATCTATAGAGGTCTGCGA
TTCAGGCTAAAAAAAATCAACACCTAGTATCCCTTTTTATGAACATAGAG
AATTTTAATGTAAAAAAGAAATTACAGGATTAGCTGAGTGTCCTTTATAT
CTCTTTGTTAGTTTTTTTTAGATTCTTTCTTCCATAACTTAATTGTTTTT
TTTTGTTGTTGTTTTTTCAGACTCGTGTCCATTACCTTCTATCTTCGACG
GTGTTATCAATCATTGTGAAGCCACTTACAAAGGTTCTCTAGAAGATCAA
GTAGATTATGGTATTGCTTGGGTGGACCTAAACATGACCATAACGGCTCC
ATCGGCCTCAAGACGTAGACGGTCCCCATGGATCGTTCGAAATATCAAAC
AAATAACGACGACAGAGAATATTCGTAAACGAAAACGACGTCAAACGACA
ACTGAGGAAACTGGTGGAATGCAATACCAAAAAATGGATACTGGAAAATC
TGGTTCTTTACGGCGACGAAAGAAACTGAAAAATCAACAAAACGGCGCTC
CTATTTATTACGTATCACCAGAAGCGCTACTCCCGGATGGAAGTGTCGTA
TCTTGTTTTGACCGTTGGGAACATTTCTCGGCTTCAGAGCTACGCGGTTT
TCCGGTTGTTGGCCGAACAAATACCTACCCAGGGAGTGGATATGTTGCAA
ATCTAGGCTACAATGAGGAAACGAGTTGGACGGTTTTAGCTGATTTGCAT
ATTCATAATTGGTTGGATAAACAGACGAGAGCCATTTTCGCAGAATTTAC
TGTTTATAACGGAAATGTCAACTTGTTTATGACTGCTTTCCTATATCTAG
AAACTTTACCAACTGGTGGTGCTTTTCCTTGGTCAGACTTCAAAGTATTC
AACGGATATCGATATTCAGCTAAAGACGGGCTACAATCAATGTGGGCTGA
AATGATTTTCATTTGTTTCATCATCTATTTCGGTGTCATTGAAATACGTA
AAATGTTGAAACTGAAATTCAATTACTTCAAAAGCTTTTTCAATCTGATC
GAAGCTACGTTGATGCCATTGTATTTGGTAATGTTCGCGTTGATTCTGAT
ACGTTGGTTAACTACCTCAGCAAACATCAAAACATTCAAGCAGAATCCAA
AAGACTTTGTCAGTTTCCAGTATGCGGCCGCAGCAGACGAAGCTTTAATG
TCTGTCATCGGAATAGTGTGCTTCCTGCTAAACCTCAAATTTTTAAGACT
ACTTCAGTTCGCAAAACTATTTTTTGTTATTGGACAAGTTATCAAAAGTT
TTACAGTACCTCTCTTATATTTCATGGTGCCTTTTACAATGTATTTCTTA
CTTTTCTGTTGGAGCGCACATCTGGCTTTTGGCAACCAACTCGAAGAATT
CCAAACTATACCTCGGACTATTACGACTCAGTTCTTGCATCTGTTAGGTG
CAACGGACTTTGAAAGTATCACAGACGCTCGCCCTGTAGTTGGTTCTTTA
TATTTCTTAGCCTACAGTGGATTCATGTTATTTGTAGCTTTTAATATGTT
CATGGCAATCATCTGTGAAGCGATTGATGACGATTTTGACGAAGAGTTTG
AAAAACAGGCTGGTGATATACAAGTGGCTGAATATTTTACTAATAAGTTG
AAATTATTGTTAGGTCGTAATATCGATGATGAAATACGCATCGATGGTGA
TGATGTTAATGAAAAAGCAGACTCACAAAAGTTGATTGAAATTGAAGAAA
TTTTGATGACATTTGAAAAAAGTTTGTCACGATTGGATTCGTTTGTTGAC
GCGATTCACGAGGATTTCGAAAGTGAAAAACAATGTACTGAAATGTGTGA
TATGCTGGTAGAAACATCTCTGTCGTCTTCTGGTGGTACTGAAGAAACCC
AAGACCAAAATATTTCAACTCATTTTAACGAAGCAGAGACACTGGACGAT
GTTTTTGATGAATCGTTTGCCAGTCTAGATACTGTCAGTGAAATCATAGA
ACTTTAAAAAAATAATCTTATTTCAATTGTGAAGATCCTTTAAATTCGAC
ATTTATTATACAAATAGCATTATGTAAATTTATTTAATACACTATTTTAC
ACGCAAATATGGATATATGACTACAATCTACCGGGTGACCCACGAAAAAG
TATAAGAGTTTGGAGGGTAACTGTGTCCGAAAAAAATTGAATTTTAACTA
AATTCTTTTTTCATGGTAAAGAGGGAAGGCAAACTTAAACTTTGATGTAT
CATTTTTTAATTTTGGAAAATTAGTTATCGAGATATGGAGGTATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011838XLOC_011838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021134-exon-sc0000378-1575043694:195682..195726TCONS_00021134-exon-sc0000378-1575043694:195682..195726Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1575043694:195161..195245TCONS_00021134-exon-sc0000378-1575043694:195161..195245Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1575043694:194237..194453TCONS_00021134-exon-sc0000378-1575043694:194237..194453Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1575043694:193661..193829TCONS_00021134-exon-sc0000378-1575043694:193661..193829Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1575043694:191079..193156TCONS_00021134-exon-sc0000378-1575043694:191079..193156Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1510915933:195682..195726TCONS_00021134-exon-sc0000378-1510915933:195682..195726Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1510915933:195161..195245TCONS_00021134-exon-sc0000378-1510915933:195161..195245Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1510915933:194237..194453TCONS_00021134-exon-sc0000378-1510915933:194237..194453Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1510915933:193661..193829TCONS_00021134-exon-sc0000378-1510915933:193661..193829Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1510915933:191079..193156TCONS_00021134-exon-sc0000378-1510915933:191079..193156Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1491911889:195682..195726TCONS_00021134-exon-sc0000378-1491911889:195682..195726Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1491911889:195161..195245TCONS_00021134-exon-sc0000378-1491911889:195161..195245Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1491911889:194237..194453TCONS_00021134-exon-sc0000378-1491911889:194237..194453Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1491911889:193661..193829TCONS_00021134-exon-sc0000378-1491911889:193661..193829Clytia hemisphaericaexon
TCONS_00021134-exon-sc0000378-1491911889:191079..193156TCONS_00021134-exon-sc0000378-1491911889:191079..193156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:191079..195726 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.41833	0.381995	0.0904414	0.0344705	0.256336	0.260421	0.237563	0.219767	0.0442002	0.497314	0.232696	0.407373	0.805017	1.03799	0.422876	0.37129	0.182993	0.292446	1.72711	1.91639	0.163816	0.200723	0.528251	0.393166	0.698538	1.12181	0.0793735	0.0625914	0.275944	0.501818
Blast
[Close]
BLAST of TCONS_00021134 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 5.121e-32
Identity = 94/325 (28.92%), Postives = 162/325 (49.85%), Query Frame = 3 
Query:  882 DGSVVSCFDRWEHFSASELRGFPVVGRTNTYPGSGYVANLGYNEETSWTVLADLHIHNWLDKQTRAIFAEFTVYNGNVNLFMTAFLYLETLPTGGAFPWSDFKVFNGYRYSAKDGLQS--MWAEMIFICFIIYFGVIEIRKMLKLKFNYFKSFFNLIEATLMPLYLVMFALILIRWLTTSANIKTFKQNPKDFVSFQYAAAADEALMSVIGIVCXXXXXXXXXXXXXAKLFFVIGQVIKSFTVPLLYFMVPFTMYFLLFCWSAHLAFGNQLEEFQTIPRTITTQFLHLLGATDFESITDARPVVGSLYFLAYSGFMLFVAFNMFM 1850
            +G   +    W++ S  + +G+P+ G+   Y G GYV  LG + +    +L  L  + WLD  TRA+F E TVYN NVNLF    L LET   G  F  +  +    Y ++  DG     + AE+I+  F++Y+ V++ ++M K  + YF S +NL+E  ++       A+ + R +    +++  + + ++ +SF   AAAD AL  +I  +  L  +K   LL+      +I   ++     +  FM+      L +  +++L FG +L  ++T+     T     LG  ++E + D  PV+GS    +   FM FV  N+F+
Sbjct: 2069 EGWNATTLSEWQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFT--DGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFI 2391

HSP 2 Score: 84.3445 bits (207), Expect = 2.463e-16
Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 3 
Query:  132 PSDSELEKSRKQKIREKMTGIVIKDIATYLIFLLIVAKLAYMEKDFHTYIYRQDMVNMLKEATYTFGPKFESISNHGYFYSWMRDTLIPGVFAGPWYNDDLVKHQGFIDNHESFLVSIPRIRQVRVQENSCPLPSIFDGVINHCEATYKGSLEDQVDYGIAW 617
            P  + +EK +   ++E+    +I++I  YL FL ++  +AY ++D   Y       ++ +   ++F   F  +     F+ W   TL+  ++  P          GFI +  S LV   +IRQVRVQE+SCPL       +N C A Y    ED  DYG  W
Sbjct: 1926 PLTAAIEKMKTTHLKEQKAFALIREILAYLGFLWMLLLVAYGQRDPSAY-------HLNRHLQHSFTRGFSGVLGFREFFKWANTTLVSNLYGHP---------PGFITDGNSKLVGSAQIRQVRVQESSCPLAQQPQAYLNGCRAPYSLDAEDMADYGEGW 2071
The following BLAST results are available for this feature:
BLAST of TCONS_00021134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK1L25.121e-3228.92Polycystic kidney disease protein 1-like 2 OS=Homo... [more]
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