TCONS_00021137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021137
Unique NameTCONS_00021137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021137 ID=TCONS_00021137|Name=TCONS_00021137|organism=Clytia hemisphaerica|type=transcript|length=453bp
cgctAATTGAAGGctattaaaatgtaaaatggtTAAAAGACAAGGTCGTA
ATAAAAAGTAGTTAAAAAAGGTATAATTCTCTAGAGGCTTTTAGGCCGTT
GTTTAAAATAGGTTTCAGTCTTTTGATATGTAAAGCTTCTTTGTATAGAA
GTGATGACCAATTATCACTGGAATCAATTACTGACGTATTATCATTTACG
AGATTTATGTAGATGGAGCGAAAATTAGGCTTTTCAATACTAAGCGTCAG
GAGGGTAATTATAAACTTGACTTCAGAGCACTCCTTCAAATGTTCGAGAA
CTGCACTCTCCTTCTTTGTAGCATGTTCTGAGCATCGCGTGAATAAATTC
CTCTCCGTTTTGCCGACATAAGAGGCACGACAACCAGGGCAGATAAATCG
ATAAACAATGTTCGACTTGAACTTCAAGGGTGTTGGGTCTTTCATGTTGG
TGT
Run BLAST on NCBI

transcript from alignment at sc0000378:256772..257361-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021137 ID=TCONS_00021137|Name=TCONS_00021137|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at sc0000378:256772..257361- (Clytia hemisphaerica)
CGCTAATTGAAGGCTATTAAAATGTAAAATGGTTAAAAGACAAGGTCGTA
ATAAAAAGTAGTTAAAAAAGGTATAATTCTCTAGAGGCTTTTAGGCCGTT
GTTTAAAATAGGTTTCAGTCTTTTGATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAGGT
TTCAGTCTTTTGATATGTAAAGCTTCTTTGTATAGAAGTGATGACCAATT
ATCACTGGAATCAATTACTGACGTATTATCATTTACGAGATTTATGTAGA
TGGAGCGAAAATTAGGCTTTTCAATACTAAGCGTCAGGAGGGTAATTATA
AACTTGACTTCAGAGCACTCCTTCAAATGTTCGAGAACTGCACTCTCCTT
CTTTGTAGCATGTTCTGAGCATCGCGTGAATAAATTCCTCTCCGTTTTGC
CGACATAAGAGGCACGACAACCAGGGCAGATAAATCGATAAACAATGTTC
GACTTGAACTTCAAGGGTGTTGGGTCTTTCATGTTGGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011839XLOC_011839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021137-exon-sc0000378-1575043694:257251..257361TCONS_00021137-exon-sc0000378-1575043694:257251..257361Clytia hemisphaericaexon
TCONS_00021137-exon-sc0000378-1575043694:256772..257113TCONS_00021137-exon-sc0000378-1575043694:256772..257113Clytia hemisphaericaexon
TCONS_00021137-exon-sc0000378-1510915933:257251..257361TCONS_00021137-exon-sc0000378-1510915933:257251..257361Clytia hemisphaericaexon
TCONS_00021137-exon-sc0000378-1510915933:256772..257113TCONS_00021137-exon-sc0000378-1510915933:256772..257113Clytia hemisphaericaexon
TCONS_00021137-exon-sc0000378-1491911889:257251..257361TCONS_00021137-exon-sc0000378-1491911889:257251..257361Clytia hemisphaericaexon
TCONS_00021137-exon-sc0000378-1491911889:256772..257113TCONS_00021137-exon-sc0000378-1491911889:256772..257113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:256772..257361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1583	1.41131	1.31148	1.54872	5.50649	2.65925	3.04714	1.44847	1.74469	1.73006	0.736551	1.26372	0.526808	0.673539	0.442872	0.293974	1.35714	1.3789	2.09319	1.70224	4.10255	2.43723	0.994094	1.36007	0.665722	1.6758e-08	0.391824	2.53444	0.722466	1.40754
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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