TCONS_00021141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021141
Unique NameTCONS_00021141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021141 ID=TCONS_00021141|Name=TCONS_00021141|organism=Clytia hemisphaerica|type=transcript|length=1509bp
ACGGGATTTAAAAAGGGGTGGAGCCATTTTAACTTGTTACTCTCTGTCCC
TCATTGGGACCAATATCGAGACCCTCCAATTacatcttttgaaatttcca
tgaGAATTTGAAAGTCTGGTTGTTAGTCAGTACAGTATAAATAAGAGAAG
ATGTTCAGAAGAAACTACAGCGTTCTTCGAAGATTAGTAGAAGAAACTTC
ACTGCTGCTACTGGTAAGCATACAACTTTATTCTTAAGAGGccttttcct
gatttttctaaGCTTTTCGATGGTCTAATTATCTGGTCATTTCGCTATAA
GAAACCTTTTGTTTAAAGGTTAAGAAGCCTATTCTtctaatgggctcttc
cagaaaaaaacccttCATAGGGGGTGGATATATTGTCCAGCCAGGGGTAt
ggaaaaaatcatgaaaaactgccatgtccatgggATGAATTTGCAATGTC
CAGAGGTACATTTAAATGTCCAGGAGGCCgatttgatgcttgtccagtgg
gtgaaaaatcgaaatgccCAGGGGTAgatcattgaaaaaatatatcctcc
accccctatgaacgatttttttggaagagcccaatgaaaGGATTGTCTTC
GTTTTTCAAAACTATCAATATCGGAAGAATAATTGGACGTTCCAATGTCC
CTGCTTCCCTCACATTTGCTACAGGCCTGTTAGCATTTTCTATTGTTGTT
TGTCTAATGTTTCAGGAAATCAAAGATGGCGTCTATCATCAACAAACTCA
TTTTATTGGCTATCGTCATTGGATCATTGAGAGCATTGTCGATTTATGAA
GATCCCATCATAACTGACTGCAAGAAGAAAGCCATGGATATTTGTGGTGG
TGATACCGTTCTACAAGATGACGAAGTGAATCTCGATCGATCATTCATCA
GACCAATTATTCCAACACATGGTTATTGTCTTTATCAAAACACACAAGAA
TGTATTAACAAACACCCTCCAAAAATGCCGCCTGTATTGCCAGGAGCAAA
GTGTGAGATCACCCACTTGCAATATCCCTGTACTTTTCAAGGGGTATCTG
AGCATTTCACAGTTTGGGTACCATCTTACCATTGTACCTACGACTCGCCA
CATTATTTTCCCTTGCTACATAAACCAATTGGAGAAGTTAATTAGAATCt
ccatttttcaaacctttTGGGTGCCTAAATGAAGGAAGGAAGGAAGCATA
AATGTATACGGTATTTAATTCGaataatatttgaaagaaagtaTCATAAA
TGCCATTAAAAATGTTGTCGATTTCTTATTTATTACCATGGGGGCACTCG
AAGTGAAAGAGGAATAAAAGGATAGTCGAAATCACTGATAtacaaaagat
ttttcctctctgatcgctaagcaaagaaagATAGTTTCCATCAGATAGTT
TCCGACCCTTCTAAGTTTGTcgaaattagatgagggatgtcgacattaga
caaaCTTACGATATTTCCCTAATGACCAAACCTAGACTGAAATCACGACT
GGTGTACTC
Run BLAST on NCBI

transcript from alignment at sc0000378:282855..284363-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021141 ID=TCONS_00021141|Name=TCONS_00021141|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at sc0000378:282855..284363- (Clytia hemisphaerica)
ACGGGATTTAAAAAGGGGTGGAGCCATTTTAACTTGTTACTCTCTGTCCC
TCATTGGGACCAATATCGAGACCCTCCAATTACATCTTTTGAAATTTCCA
TGAGAATTTGAAAGTCTGGTTGTTAGTCAGTACAGTATAAATAAGAGAAG
ATGTTCAGAAGAAACTACAGCGTTCTTCGAAGATTAGTAGAAGAAACTTC
ACTGCTGCTACTGGTAAGCATACAACTTTATTCTTAAGAGGCCTTTTCCT
GATTTTTCTAAGCTTTTCGATGGTCTAATTATCTGGTCATTTCGCTATAA
GAAACCTTTTGTTTAAAGGTTAAGAAGCCTATTCTTCTAATGGGCTCTTC
CAGAAAAAAACCCTTCATAGGGGGTGGATATATTGTCCAGCCAGGGGTAT
GGAAAAAATCATGAAAAACTGCCATGTCCATGGGATGAATTTGCAATGTC
CAGAGGTACATTTAAATGTCCAGGAGGCCGATTTGATGCTTGTCCAGTGG
GTGAAAAATCGAAATGCCCAGGGGTAGATCATTGAAAAAATATATCCTCC
ACCCCCTATGAACGATTTTTTTGGAAGAGCCCAATGAAAGGATTGTCTTC
GTTTTTCAAAACTATCAATATCGGAAGAATAATTGGACGTTCCAATGTCC
CTGCTTCCCTCACATTTGCTACAGGCCTGTTAGCATTTTCTATTGTTGTT
TGTCTAATGTTTCAGGAAATCAAAGATGGCGTCTATCATCAACAAACTCA
TTTTATTGGCTATCGTCATTGGATCATTGAGAGCATTGTCGATTTATGAA
GATCCCATCATAACTGACTGCAAGAAGAAAGCCATGGATATTTGTGGTGG
TGATACCGTTCTACAAGATGACGAAGTGAATCTCGATCGATCATTCATCA
GACCAATTATTCCAACACATGGTTATTGTCTTTATCAAAACACACAAGAA
TGTATTAACAAACACCCTCCAAAAATGCCGCCTGTATTGCCAGGAGCAAA
GTGTGAGATCACCCACTTGCAATATCCCTGTACTTTTCAAGGGGTATCTG
AGCATTTCACAGTTTGGGTACCATCTTACCATTGTACCTACGACTCGCCA
CATTATTTTCCCTTGCTACATAAACCAATTGGAGAAGTTAATTAGAATCT
CCATTTTTCAAACCTTTTGGGTGCCTAAATGAAGGAAGGAAGGAAGCATA
AATGTATACGGTATTTAATTCGAATAATATTTGAAAGAAAGTATCATAAA
TGCCATTAAAAATGTTGTCGATTTCTTATTTATTACCATGGGGGCACTCG
AAGTGAAAGAGGAATAAAAGGATAGTCGAAATCACTGATATACAAAAGAT
TTTTCCTCTCTGATCGCTAAGCAAAGAAAGATAGTTTCCATCAGATAGTT
TCCGACCCTTCTAAGTTTGTCGAAATTAGATGAGGGATGTCGACATTAGA
CAAACTTACGATATTTCCCTAATGACCAAACCTAGACTGAAATCACGACT
GGTGTACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011842XLOC_011842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021141-exon-sc0000378-1575043694:282855..284363TCONS_00021141-exon-sc0000378-1575043694:282855..284363Clytia hemisphaericaexon
TCONS_00021141-exon-sc0000378-1510915933:282855..284363TCONS_00021141-exon-sc0000378-1510915933:282855..284363Clytia hemisphaericaexon
TCONS_00021141-exon-sc0000378-1491911889:282855..284363TCONS_00021141-exon-sc0000378-1491911889:282855..284363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:282855..284363 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0891401	0.0434628	0.0617996	0.0302306	0.180316	0.379967	9.3975	11.9092	28.591	17.7908	13.1486	27.1738	0.0889264	0.0307836	0	0.0166301	0.0232082	0	0.236895	0	0.184703	0.0630575	0	0.0464602	0.087902	0.128123	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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