TCONS_00021142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021142
Unique NameTCONS_00021142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021142 ID=TCONS_00021142|Name=TCONS_00021142|organism=Clytia hemisphaerica|type=transcript|length=713bp
TTCAGAAGAAACTACAGCGTTCTTCGAAGATTAGTAGAAGAAACTTCACT
GCTGCTACTGGAAATCAAAGATGGCGTCTATCATCAACAAACTCATTTTA
TTGGCTATCGTCATTGGATCATTGAGAGCATTGTCGATTTATGAAGATCC
CATCATAACTGACTGCAAGAAGAAAGCCATGGATATTTGTGGTGGTGATA
CCGTTCTACAAGATGACGAAGTGAATCTCGATCGATCATTCATCAGACCA
ATTATTCCAACACATGGTTATTGTCTTTATCAAAACACACAAGAATGTAT
TAACAAACACCCTCCAAAAATGCCGCCTGTATTGCCAGGAGCAAAGTGTG
AGATCACCCACTTGCAATATCCCTGTACTTTTCAAGGGGTATCTGAGCAT
TTCACAGTTTGGGTACCATCTTACCATTGTACCTACGACTCGCCACATTA
TTTTCCCTTGCTACATAAACCAATTGGAGAAGTTAATTAGAATCtccatt
tttcaaacctttTGGGTGCCTAAATGAAGGAAGGAAGGAAGCATAAATGT
ATACGGTATTTAATTCGaataatatttgaaagaaagtaTCATAAATGCCA
TTAAAAATGTTGTCGATTTCTTATTTATTACCATGGGGGCACTCGAAGTG
AAAGAGGAATAAAAGGATAGTCGAAATCACTGATAtacaaaagatttttc
ctctctgatcgct
Run BLAST on NCBI

protein sequence of TCONS_00021142-protein

>TCONS_00021142-protein ID=TCONS_00021142-protein|Name=TCONS_00021142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MASIINKLILLAIVIGSLRALSIYEDPIITDCKKKAMDICGGDTVLQDDE
VNLDRSFIRPIIPTHGYCLYQNTQECINKHPPKMPPVLPGAKCEITHLQY
PCTFQGVSEHFTVWVPSYHCTYDSPHYFPLLHKPIGEVN
Run BLAST on NCBI

transcript from alignment at sc0000378:282996..284210-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021142 ID=TCONS_00021142|Name=TCONS_00021142|organism=Clytia hemisphaerica|type=transcript|length=1215bp|location=Sequence derived from alignment at sc0000378:282996..284210- (Clytia hemisphaerica)
TTCAGAAGAAACTACAGCGTTCTTCGAAGATTAGTAGAAGAAACTTCACT
GCTGCTACTGGTAAGCATACAACTTTATTCTTAAGAGGCCTTTTCCTGAT
TTTTCTAAGCTTTTCGATGGTCTAATTATCTGGTCATTTCGCTATAAGAA
ACCTTTTGTTTAAAGGTTAAGAAGCCTATTCTTCTAATGGGCTCTTCCAG
AAAAAAACCCTTCATAGGGGGTGGATATATTGTCCAGCCAGGGGTATGGA
AAAAATCATGAAAAACTGCCATGTCCATGGGATGAATTTGCAATGTCCAG
AGGTACATTTAAATGTCCAGGAGGCCGATTTGATGCTTGTCCAGTGGGTG
AAAAATCGAAATGCCCAGGGGTAGATCATTGAAAAAATATATCCTCCACC
CCCTATGAACGATTTTTTTGGAAGAGCCCAATGAAAGGATTGTCTTCGTT
TTTCAAAACTATCAATATCGGAAGAATAATTGGACGTTCCAATGTCCCTG
CTTCCCTCACATTTGCTACAGGCCTGTTAGCATTTTCTATTGTTGTTTGT
CTAATGTTTCAGGAAATCAAAGATGGCGTCTATCATCAACAAACTCATTT
TATTGGCTATCGTCATTGGATCATTGAGAGCATTGTCGATTTATGAAGAT
CCCATCATAACTGACTGCAAGAAGAAAGCCATGGATATTTGTGGTGGTGA
TACCGTTCTACAAGATGACGAAGTGAATCTCGATCGATCATTCATCAGAC
CAATTATTCCAACACATGGTTATTGTCTTTATCAAAACACACAAGAATGT
ATTAACAAACACCCTCCAAAAATGCCGCCTGTATTGCCAGGAGCAAAGTG
TGAGATCACCCACTTGCAATATCCCTGTACTTTTCAAGGGGTATCTGAGC
ATTTCACAGTTTGGGTACCATCTTACCATTGTACCTACGACTCGCCACAT
TATTTTCCCTTGCTACATAAACCAATTGGAGAAGTTAATTAGAATCTCCA
TTTTTCAAACCTTTTGGGTGCCTAAATGAAGGAAGGAAGGAAGCATAAAT
GTATACGGTATTTAATTCGAATAATATTTGAAAGAAAGTATCATAAATGC
CATTAAAAATGTTGTCGATTTCTTATTTATTACCATGGGGGCACTCGAAG
TGAAAGAGGAATAAAAGGATAGTCGAAATCACTGATATACAAAAGATTTT
TCCTCTCTGATCGCT

Coding sequence (CDS) from alignment at sc0000378:282996..284210-

>TCONS_00021142 ID=TCONS_00021142|Name=TCONS_00021142|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000378:282996..284210- (Clytia hemisphaerica)
ATGGCGTCTATCATCAACAAACTCATTTTATTGGCTATCGTCATTGGATC
ATTGAGAGCATTGTCGATTTATGAAGATCCCATCATAACTGACTGCAAGA
AGAAAGCCATGGATATTTGTGGTGGTGATACCGTTCTACAAGATGACGAA
GTGAATCTCGATCGATCATTCATCAGACCAATTATTCCAACACATGGTTA
TTGTCTTTATCAAAACACACAAGAATGTATTAACAAACACCCTCCAAAAA
TGCCGCCTGTATTGCCAGGAGCAAAGTGTGAGATCACCCACTTGCAATAT
CCCTGTACTTTTCAAGGGGTATCTGAGCATTTCACAGTTTGGGTACCATC
TTACCATTGTACCTACGACTCGCCACATTATTTTCCCTTGCTACATAAAC
CAATTGGAGAAGTTAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011842XLOC_011842Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021142-proteinTCONS_00021142-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021142-exon-sc0000378-1575043694:284151..284210TCONS_00021142-exon-sc0000378-1575043694:284151..284210Clytia hemisphaericaexon
TCONS_00021142-exon-sc0000378-1575043694:282996..283648TCONS_00021142-exon-sc0000378-1575043694:282996..283648Clytia hemisphaericaexon
TCONS_00021142-exon-sc0000378-1510915933:284151..284210TCONS_00021142-exon-sc0000378-1510915933:284151..284210Clytia hemisphaericaexon
TCONS_00021142-exon-sc0000378-1510915933:282996..283648TCONS_00021142-exon-sc0000378-1510915933:282996..283648Clytia hemisphaericaexon
TCONS_00021142-exon-sc0000378-1491911889:284151..284210TCONS_00021142-exon-sc0000378-1491911889:284151..284210Clytia hemisphaericaexon
TCONS_00021142-exon-sc0000378-1491911889:282996..283648TCONS_00021142-exon-sc0000378-1491911889:282996..283648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:282996..284210 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122037	0.162468	0	0	1.33853	1.49537	148.888	140.681	1261.69	840.958	846.706	1176.19	0.0983366	0.0664536	0.119913	0	0.151511	0.0541626	3.20522	0	0	0.0365333	0.161421	0.0269174	0	0.209131	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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