TCONS_00021143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021143
Unique NameTCONS_00021143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1104

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021143 ID=TCONS_00021143|Name=TCONS_00021143|organism=Clytia hemisphaerica|type=transcript|length=1104bp
atttcagagaatattttattttaaaataaacaaagaaaaatggcAGAGAA
GCCTGAAGATTTGAATTTACCAACTGCTATTGTTGGGAGACTGATCAAAG
AAGTTTTACCTGAAGGAATAAACATCTCCAAAGAAGCACGCGCAGCTATC
AGTAAATCAGCAAGTGTCTTTGTATTGTATGCAACGTCATGTGCGAATGC
CTTAGCAATGAAACACAAGCGGAAAACGTTGACAGCCAATGATGTTCTGG
ATGCAATGGAAGAAATGGAGTTCCCTTCATTTATTGAACCTCTCAAAGAT
GGGTTAGAAGTTTTCAAGCGTGAACAGAAAGGGAAGAAAGATGCAGCTGA
GTTGAAAAGGAAACAGAAAGAAAGCGAGAAGAAAGACACCATGAAAAAGC
AACGAGAAGATGGTGAAATAGTTCCTGAGGGTGATGAAAACACACCAGTG
TCGGAGAACAGTGCaccccttgaaacccttgaagaAGGGGGAGAACCAGA
AGAAAGTGCTCCAGTTGCCATGGAATCATAAAcaagaaatgaagaagaaa
aggaaaaaaattactGGAGTTGCCAGGTTTTCAATTCCTTTTTCCCgtat
attttcttcttttttgaaaagtctttCGTTAACAATGAAGAGTgtgattt
ttcttcaaattcgaTTGTTTGGAGAGAGTGGTAAATAAATGTTACAACGC
CAGACGTAAAGCTGCTAGATCAAGCCATATCTAGTATGTTTGAAAATCAG
GATACACGGTTTTTTGCACCCCAAATGGCATACCAGAATGGGCTCTGTTG
ACCCGGCAAAgatatttatttaaaattaataTTCATAGATATTATATCAC
AGGTGTAAATAGAACTTTCGTATAAGCAAACCATTTTTAGATCGGAAAGT
GGATTCGCCAttgtccattttttttaaagaaattattatcCTTTTGGATA
TAATTGATTACTGAAATACTCAGTTTAAATGTATTTTCGTGAACAACACT
ATTCAAGTAAAATAAGGATCGGCATATATTCTTCACTTAAAAGATGCCGA
GCCCTTAACAGTCGAGTGTAAACGCAACCAAATGGCCaagcatggtttgc
gccg
Run BLAST on NCBI

protein sequence of TCONS_00021143-protein

>TCONS_00021143-protein ID=TCONS_00021143-protein|Name=TCONS_00021143-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MAEKPEDLNLPTAIVGRLIKEVLPEGINISKEARAAISKSASVFVLYATS
CANALAMKHKRKTLTANDVLDAMEEMEFPSFIEPLKDGLEVFKREQKGKK
DAAELKRKQKESEKKDTMKKQREDGEIVPEGDENTPVSENSAPLETLEEG
GEPEESAPVAMES
Run BLAST on NCBI

transcript from alignment at sc0000378:288447..290873-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021143 ID=TCONS_00021143|Name=TCONS_00021143|organism=Clytia hemisphaerica|type=transcript|length=2427bp|location=Sequence derived from alignment at sc0000378:288447..290873- (Clytia hemisphaerica)
ATTTCAGAGAATATTTTATTTTAAAATAAACAAAGAAAAATGGCAGAGAA
GCCTGAAGATTTGAATTTACCAACTGCTATTGTTGGGAGACTGATCAAAG
AAGTTGTAAGTTCAATTCATACAATTCATGATATGCACCACTGCAATGTC
TTCGTCGGAGCAAACAGCTGATTGGTTAAAAGTGACGTATTGACTGGTTT
TACGTCACTTAAAACAATCATCTATTGGGTCCGCAATGTAATGTCAGAAG
ACATTGCAGTAGTGCATATCATGAATTGCATTTTTCCATTTGCATGTCAT
ATGAAATACCCTGACCTTTTCTAGCCCTGGAATCTATGACAAAAATTCAC
AGGTTCTTTTGTTGTATAAAAATTCGGTTTTATAAGCATTGAATTTTTTT
CTGTTACCTTTCTTCGATTTAGATTCGCCATAACCATCTTTATCATTTAA
ACTTTTTAGTTACCTGAAGGAATAAACATCTCCAAAGAAGCACGCGCAGC
TATCAGTAAATCAGCAAGTGTCTTTGTATTGTATGCAACGTCATGGTAAT
TAAATAATGATTGTGTTTTTCATTAGGCTTTCACACTTGGTGATAAAAGG
TGACAAAAGAAAGAAATTATAAAGTCAGTCTGAATATAATATACAGCAGG
GACAACAAATCCTCTCTTGATAGAGTTCGAATTGGATATCGATTTTGTGC
TTGTTGATAACATAATCCTGAGTGGAATATTTATTTTCAAATAGAAACAA
AAAGAAATCAAGAATTAAGATGGAAAAAGAAGAGGAAAAACTCTATCAAA
TTTACAATTAGCCTCTATCAAAATAATGTACAGCTTCTTTTTTCTCCGCT
GCAGATTATATTGGACCAGACTTAAAAGGCTAATTGTCCGGATATTATTT
ACAGTATTTATTCCAGTAGTTCTCTTATGCTTTAATGCTATTCGCCATTG
TCTTTCAGTGCGAATGCCTTAGCAATGAAACACAAGCGGAAAACGTTGAC
AGCCAATGATGTTCTGGATGCAATGGAAGAAATGGAGTTCCCTTCATTTA
TTGAACCTCTCAAAGATGGGTTAGAAGGTATTGCTTTATTGCTTGATATT
GACCATTATTCCTCCACTTCAAGCCCTCTCGTATGATTAAACTGGCCTGG
AAAGTGATCAAAATCATCGTGTATTTTGTCAAACTTCTTTTCTACTACCA
AAGATATAGAACGTCAAAAATTGTATTATGCGCTCAAGTGTTATTAGGTA
CATTAATTTCTTTTTCATATTACAGTTTTCAAGCGTGAACAGAAAGGGAA
GAAAGATGCAGCTGAGTTGAAAAGGAAACAGAAAGAAAGCGAGAAGAAAG
ACACCATGAAAAAGCAACGAGAAGATGGTGAAATAGTTCCTGAGGTATCT
TGCTCTTGCTCAAACTTATACCACTCTCTAGTACCGAACAAAAAACAGCC
TGTTTCATCATGGAATTCTGACTTTGTTAGTTTGTGAACTCTTTCAACAA
AGTATGCAAATCTGCGACTACAACAACAAAATGACAAATGCTTCATCAGC
CGGGCTGGAATTAACATAGATTGAATGGCTTGAATGAGGATGGGGTCTGT
TTTGCTTTTATATTTTGAAGCTTTTGAAAGATGCGGGAAAGTTAAAAAAA
TCTTTTTTTGAATACCCCCAAAATATAAGGTACTAAAAGTGACACCTTAA
AGTAGCCTTCTAATATTACCTTTTTAAAAGTATAATTTGCTTTTGATATC
AGGGTGATGAAAACACACCAGTGTCGGAGAACAGTGCACCCCTTGAAACC
CTTGAAGAAGGGGGAGAACCAGAAGAAAGTGCTCCAGTTGCCATGGAATC
ATAAACAAGAAATGAAGAAGAAAAGGAAAAAAATTACTGGAGTTGCCAGG
TTTTCAATTCCTTTTTCCCGTATATTTTCTTCTTTTTTGAAAAGTCTTTC
GTTAACAATGAAGAGTGTGATTTTTCTTCAAATTCGATTGTTTGGAGAGA
GTGGTAAATAAATGTTACAACGCCAGACGTAAAGCTGCTAGATCAAGCCA
TATCTAGTATGTTTGAAAATCAGGATACACGGTTTTTTGCACCCCAAATG
GCATACCAGAATGGGCTCTGTTGACCCGGCAAAGATATTTATTTAAAATT
AATATTCATAGATATTATATCACAGGTGTAAATAGAACTTTCGTATAAGC
AAACCATTTTTAGATCGGAAAGTGGATTCGCCATTGTCCATTTTTTTTAA
AGAAATTATTATCCTTTTGGATATAATTGATTACTGAAATACTCAGTTTA
AATGTATTTTCGTGAACAACACTATTCAAGTAAAATAAGGATCGGCATAT
ATTCTTCACTTAAAAGATGCCGAGCCCTTAACAGTCGAGTGTAAACGCAA
CCAAATGGCCAAGCATGGTTTGCGCCG

Coding sequence (CDS) from alignment at sc0000378:288447..290873-

>TCONS_00021143 ID=TCONS_00021143|Name=TCONS_00021143|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000378:288447..290873- (Clytia hemisphaerica)
GGTGATGAAAACACACCAGTGTCGGAGAACAGTGCACCCCTTGAAACCCT
TGAAGAAGGGGGAGAACCAGAAGAAAGTGCTCCAGTTGCCATGGAATCAT
AATTTTCAAGCGTGAACAGAAAGGGAAGAAAGATGCAGCTGAGTTGAAAA
GGAAACAGAAAGAAAGCGAGAAGAAAGACACCATGAAAAAGCAACGAGAA
GATGGTGAAATAGTTCCTGAGTGCGAATGCCTTAGCAATGAAACACAAGC
GGAAAACGTTGACAGCCAATGATGTTCTGGATGCAATGGAAGAAATGGAG
TTCCCTTCATTTATTGAACCTCTCAAAGATGGGTTAGAAGTTACCTGAAG
GAATAAACATCTCCAAAGAAGCACGCGCAGCTATCAGTAAATCAGCAAGT
GTCTTTGTATTGTATGCAACGTCATGATGGCAGAGAAGCCTGAAGATTTG
AATTTACCAACTGCTATTGTTGGGAGACTGATCAAAGAAGTTGGTGATGA
AAACACACCAGTGTCGGAGAACAGTGCACCCCTTGAAACCCTTGAAGAAG
GGGGAGAACCAGAAGAAAGTGCTCCAGTTGCCATGGAATCATAATTTTCA
AGCGTGAACAGAAAGGGAAGAAAGATGCAGCTGAGTTGAAAAGGAAACAG
AAAGAAAGCGAGAAGAAAGACACCATGAAAAAGCAACGAGAAGATGGTGA
AATAGTTCCTGAGTGCGAATGCCTTAGCAATGAAACACAAGCGGAAAACG
TTGACAGCCAATGATGTTCTGGATGCAATGGAAGAAATGGAGTTCCCTTC
ATTTATTGAACCTCTCAAAGATGGGTTAGAAGTTACCTGAAGGAATAAAC
ATCTCCAAAGAAGCACGCGCAGCTATCAGTAAATCAGCAAGTGTCTTTGT
ATTGTATGCAACGTCATGATGGCAGAGAAGCCTGAAGATTTGAATTTACC
AACTGCTATTGTTGGGAGACTGATCAAAGAAGTTGGTGATGAAAACACAC
CAGTGTCGGAGAACAGTGCACCCCTTGAAACCCTTGAAGAAGGGGGAGAA
CCAGAAGAAAGTGCTCCAGTTGCCATGGAATCATAATTTTCAAGCGTGAA
CAGAAAGGGAAGAAAGATGCAGCTGAGTTGAAAAGGAAACAGAAAGAAAG
CGAGAAGAAAGACACCATGAAAAAGCAACGAGAAGATGGTGAAATAGTTC
CTGAGTGCGAATGCCTTAGCAATGAAACACAAGCGGAAAACGTTGACAGC
CAATGATGTTCTGGATGCAATGGAAGAAATGGAGTTCCCTTCATTTATTG
AACCTCTCAAAGATGGGTTAGAAGTTACCTGAAGGAATAAACATCTCCAA
AGAAGCACGCGCAGCTATCAGTAAATCAGCAAGTGTCTTTGTATTGTATG
CAACGTCATGATGGCAGAGAAGCCTGAAGATTTGAATTTACCAACTGCTA
TTGTTGGGAGACTGATCAAAGAAGTTGGTGATGAAAACACACCAGTGTCG
GAGAACAGTGCACCCCTTGAAACCCTTGAAGAAGGGGGAGAACCAGAAGA
AAGTGCTCCAGTTGCCATGGAATCATAATTTTCAAGCGTGAACAGAAAGG
GAAGAAAGATGCAGCTGAGTTGAAAAGGAAACAGAAAGAAAGCGAGAAGA
AAGACACCATGAAAAAGCAACGAGAAGATGGTGAAATAGTTCCTGAGTGC
GAATGCCTTAGCAATGAAACACAAGCGGAAAACGTTGACAGCCAATGATG
TTCTGGATGCAATGGAAGAAATGGAGTTCCCTTCATTTATTGAACCTCTC
AAAGATGGGTTAGAAGTTACCTGAAGGAATAAACATCTCCAAAGAAGCAC
GCGCAGCTATCAGTAAATCAGCAAGTGTCTTTGTATTGTATGCAACGTCA
TGATGGCAGAGAAGCCTGAAGATTTGAATTTACCAACTGCTATTGTTGGG
AGACTGATCAAAGAAGTTGGTGATGAAAACACACCAGTGTCGGAGAACAG
TGCACCCCTTGAAACCCTTGAAGAAGGGGGAGAACCAGAAGAAAGTGCTC
CAGTTGCCATGGAATCATAATTTTCAAGCGTGAACAGAAAGGGAAGAAAG
ATGCAGCTGAGTTGAAAAGGAAACAGAAAGAAAGCGAGAAGAAAGACACC
ATGAAAAAGCAACGAGAAGATGGTGAAATAGTTCCTGAGTGCGAATGCCT
TAGCAATGAAACACAAGCGGAAAACGTTGACAGCCAATGATGTTCTGGAT
GCAATGGAAGAAATGGAGTTCCCTTCATTTATTGAACCTCTCAAAGATGG
GTTAGAAGTTACCTGAAGGAATAAACATCTCCAAAGAAGCACGCGCAGCT
ATCAGTAAATCAGCAAGTGTCTTTGTATTGTATGCAACGTCATGATGGCA
GAGAAGCCTGAAGATTTGAATTTACCAACTGCTATTGTTGGGAGACTGAT
CAAAGAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011843XLOC_011843Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021143-exon-sc0000378-1575043694:290769..290873TCONS_00021143-exon-sc0000378-1575043694:290769..290873Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1575043694:290329..290414TCONS_00021143-exon-sc0000378-1575043694:290329..290414Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1575043694:289797..289915TCONS_00021143-exon-sc0000378-1575043694:289797..289915Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1575043694:289480..289598TCONS_00021143-exon-sc0000378-1575043694:289480..289598Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1575043694:288447..289121TCONS_00021143-exon-sc0000378-1575043694:288447..289121Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1510915933:290769..290873TCONS_00021143-exon-sc0000378-1510915933:290769..290873Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1510915933:290329..290414TCONS_00021143-exon-sc0000378-1510915933:290329..290414Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1510915933:289797..289915TCONS_00021143-exon-sc0000378-1510915933:289797..289915Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1510915933:289480..289598TCONS_00021143-exon-sc0000378-1510915933:289480..289598Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1510915933:288447..289121TCONS_00021143-exon-sc0000378-1510915933:288447..289121Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1491911889:290769..290873TCONS_00021143-exon-sc0000378-1491911889:290769..290873Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1491911889:290329..290414TCONS_00021143-exon-sc0000378-1491911889:290329..290414Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1491911889:289797..289915TCONS_00021143-exon-sc0000378-1491911889:289797..289915Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1491911889:289480..289598TCONS_00021143-exon-sc0000378-1491911889:289480..289598Clytia hemisphaericaexon
TCONS_00021143-exon-sc0000378-1491911889:288447..289121TCONS_00021143-exon-sc0000378-1491911889:288447..289121Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021143-proteinTCONS_00021143-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:288447..290873 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
142.188	137.187	233.388	256.481	71.5785	52.845	39.2928	38.0259	52.3438	41.7484	37.7108	36.2472	21.8552	22.2587	21.3384	22.223	45.2315	37.0886	5.73079	8.95119	29.0512	26.2466	56.9039	48.924	31.2388	31.9061	24.5681	16.8804	26.5743	27.5681
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity
Blast
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BLAST of TCONS_00021143 vs. Swiss-Prot (Human)
Match: DPOE3 (DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.290e-48
Identity = 75/104 (72.12%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:   40 MAEKPEDLNLPTAIVGRLIKEVLPEGINISKEARAAISKSASVFVLYATSCANALAMKHKRKTLTANDVLDAMEEMEFPSFIEPLKDGLEVFKREQKGKKDAAE 351
            MAE+PEDLNLP A++ R+IKE LP+G+NISKEAR+AIS++ASVFVLYATSCAN  AMK KRKTL A+DVL AMEEMEF  F+ PLK+ LE ++REQKGKK+A+E
Sbjct:    1 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASE 104
The following BLAST results are available for this feature:
BLAST of TCONS_00021143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOE31.290e-4872.12DNA polymerase epsilon subunit 3 OS=Homo sapiens G... [more]
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