TCONS_00021145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021145
Unique NameTCONS_00021145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021145 ID=TCONS_00021145|Name=TCONS_00021145|organism=Clytia hemisphaerica|type=transcript|length=690bp
tttcacgcattttCATTTGAAACATATACTTTAAAATCTCAACTCCACTG
TGTGAAAAccgttgaaatttttctaaccCAAAATTAATTTCTTCAGACCG
ATCTTTGGGTGGCAAACGATTCGTCAAAAATTACCCGAGTTTTCCTGGTG
TAAGTATTCCATTTCCGGTTAAAAACTATTCTGTGGGCTCAAAAATATTA
TAAAGTGGCGATTTTGGTCGGATTAGATTGTTCGATAAAATTTCATTAAG
CCCTGAAAATTAGATCATAgatttaatgaatttttttattgagcTATAGT
AAATTTCCTTCCGGCGTTATGATTGACTGGTCTGGACCATAAAATTCTAT
AATAGGAACCCATAAAGTAGGAATCGTAAATAGCGGGAACCCGATAATAG
AAACTCTTAGTGCGATTGCTATGCGTAAAATCTAactcaaaatctgaaaa
attaagtGGAGACACATCGAAACGATCAATATCATCTCAATACCATATCA
TATAAACGACCGCAGTACAGCGGTAAGGAAAATTCGGATACCAAAGAATC
CCAAAATGGtaattgatgcctctctgcttgatgctcagcaattaagagga
gggtcaagggtaagtggagcaatccaggtaGACAGaatggcgccctcccc
taccttcgtgTACTCTTAGGAGCCAAATAACCCCCCCCCC
Run BLAST on NCBI

transcript from alignment at sc0000378:67527..68216

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021145 ID=TCONS_00021145|Name=TCONS_00021145|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at sc0000378:67527..68216 (Clytia hemisphaerica)
GGGGGGGGGGTTATTTGGCTCCTAAGAGTAcacgaaggtaggggagggcg
ccattCTGTCtacctggattgctccacttacccttgaccctcctcttaat
tgctgagcatcaagcagagaggcatcaattaCCATTTTGGGATTCTTTGG
TATCCGAATTTTCCTTACCGCTGTACTGCGGTCGTTTATATGATATGGTA
TTGAGATGATATTGATCGTTTCGATGTGTCTCCacttaatttttcagatt
ttgagtTAGATTTTACGCATAGCAATCGCACTAAGAGTTTCTATTATCGG
GTTCCCGCTATTTACGATTCCTACTTTATGGGTTCCTATTATAGAATTTT
ATGGTCCAGACCAGTCAATCATAACGCCGGAAGGAAATTTACTATAgctc
aataaaaaaattcattaaatcTATGATCTAATTTTCAGGGCTTAATGAAA
TTTTATCGAACAATCTAATCCGACCAAAATCGCCACTTTATAATATTTTT
GAGCCCACAGAATAGTTTTTAACCGGAAATGGAATACTTACACCAGGAAA
ACTCGGGTAATTTTTGACGAATCGTTTGCCACCCAAAGATCGGTCTGAAG
AAATTAATTTTGggttagaaaaatttcaacggTTTTCACACAGTGGAGTT
GAGATTTTAAAGTATATGTTTCAAATGaaaatgcgtgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011845XLOC_011845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021145-exon-sc0000378-1491911889:67527..68216TCONS_00021145-exon-sc0000378-1491911889:67527..68216Clytia hemisphaericaexon
TCONS_00021145-exon-sc0000378-1510915933:67527..68216TCONS_00021145-exon-sc0000378-1510915933:67527..68216Clytia hemisphaericaexon
TCONS_00021145-exon-sc0000378-1575043694:67527..68216TCONS_00021145-exon-sc0000378-1575043694:67527..68216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:67527..68216 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221275	0.28835	0.950135	1.64043	0	0.0786716	0	0.0887768	0	0	0.224181	0	0.0514413	0.153114	0.125761	0.0449802	0	0.227604	0	0.1707	0	0	0	0	0.079191	0.35338	0	0	0.081866	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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