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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021146 ID=TCONS_00021146|Name=TCONS_00021146|organism=Clytia hemisphaerica|type=transcript|length=2429bp
agtaaaaataaaaaaaggtatCAGCAATGAAACTATGTAATTTCTTACCA
TCAGAAATTACTAGAGACCAAGATATTCAACCCTTTGCATTATGGGATCA
ATTTGATTCAGATTCAGTTGAGCAAGGCTTTGAGGAAAGCGGCCAATACT
ATCTTATCTATCAAGATGATTATAAACAAAGATGTTTTCTTCAATTTGTA
TATTTTGATCGAGACTTAATGACATTAAAGAGTAATCttataaaaatgaa
gtttcCAAATATTCAAGATCGGAATTTTTCTAGGACATTCTCATTTGACA
AGCATGGAGCTCAAGTTGTGCATGCTATCATAAAATATTCCAAAGATTCG
GAAGGTCATCAACAGTTGAAATGTATTGAtttgtattatttttgttttca
tgatTTATTGGAAACGAAGAATGATCATGATATTTTTATTGAGGAGGATC
GAAAACCTGACCTCTCTTTGGAATATCCTGACacagaaagttatgaagaa
gTCAAATTTGATTATGAATCTCGCGATAGAGGAATGACTACTTTATTAGT
TCACTCTTTCAATCGATTCCCAGATTCGATCGATCATGAGGATACaccaa
aaagacaaaaaatttgTTCCGAATGTAGAGTTGATTTGGTACAATCATCA
AAAGGAAAGATTTggcattcaaaaaaaatttctcttgaCTTGAGTCGTTC
TAATActaatttatttttaacaagaGATAAGATTTGCGCGTACGGAGATG
TCAATGATATGGTTTTCAAGGCCTACGAGTTTAATTTGGATGGTGACTAC
GTAACATCTTACTCCGCATTTATAGATCCTGATCACGATTCTCACATTTT
AAAACAATATCGTAATACAATGCATTATATCACACAAACTGAAGTTATTC
ATCAGAATGAATCAAGACCATTCCAATCTTACCGCGTTCTAAAGTTTAAA
AATGGCAAAGTTGAGGTTTTAGCTGAATGGAATGATAATACCAATGGCGA
TGGTTTACCCCATGATTTCTACGATGATGATCATTCAGATTGGCGTTTTT
TCCGTTTTGAGTGTATCTTAACCCGGCTTGGTCATCTTTTAGCACAGTAT
CGAATTGACAGAGGCAATGGTCTTTGCGAGTTTCGGTTTTTTGATCTGAA
AACTAAAGATACTTTAATAAAAttccaaatttcagaaaatcctTATTTAT
TTGAAGGTAAACTCAATTTGTCTAGGAATGGCAGAGAGTTTTCATCGATG
TACCATTATGACCAAAAGCTTTTCAAAGTATGGAAGATCGACTTTAAAAC
AGGTGAAATATCGTTGAAAAAGTTCGCCAGATTGGCTGTTTTGACTTCAT
TTAGTGAAGTATATTTAATACAACAAAATCTACCAAAATCATTGTTTGAT
TACCTTGGAATTGAGAAATAATGTGCTTGTTGTTTAGTAGCCAATGGTCA
TTTTCTATTATGTACAcagttttattattattatatcgCGAACCACAAGT
CTTAATTCGCAAATGAGAATTACGAAAAGGAGATAGAACTTTCCAAGGAA
ATTTGGAGGTTGAAACGCAAAAACAGACACCCAAAGATTACTTGGAAAAC
AATCCGTCGTTGTCCACCCTTCAACCGTGCCTCGGTAAAATGTTCACTTT
GCCTCAGTGAAAAATTCGAAATCGCAACATTCGACCAGCTCGACAAGCTG
TTGAACTTCAGAATTCGAACTGATTTCGAAATGCCGCCACATGAACAAGT
TCACGCTAAAACAACACGACTCGAAAGACTGACGtcaattgttttcaaaa
gaagccAGTACGTTATTGTTATCGAAAAGTttcgagtacaatatgagaaa
tattttacgagttccaaaatttttccgtacaatattttccgagcctttgg
gcgaggaaaatatacggaaaatcaggaacgagtgaaatatttccatattg
tacgagcaaatgtctgataactggtttatcggcgacccaaaaaatacact
ttctgtgttggaaaaaagcgcagggcagttttgtagcaaagtgacgttag
attgctactaccgctacaatgcaacaacattttttcgtcaatttatattt
ttacatgtaaaatacaaaatgtattgtattttaaccaatcagattgcaga
tattttttggatcgccgataaattCAGGTACAttaggaaattcaatatta
ttattttttgtttgcagcaaatgcTGGGTCGGTAATTGATACAATAAAAT
AATTGGTCTCgctcaactgagaatattgAAATATACATGTGATGTAATAT
CATTTATGctattatatttatattttcaattattgataataattttaatt
tctttaagTCTTATGTAACGCCTTagctatattttttttttctttttgtg
atATGTGGTATATTGTATCTGCTTTTGAA Run BLAST on NCBI protein sequence of TCONS_00021146-protein >TCONS_00021146-protein ID=TCONS_00021146-protein|Name=TCONS_00021146-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MKLCNFLPSEITRDQDIQPFALWDQFDSDSVEQGFEESGQYYLIYQDDYK
QRCFLQFVYFDRDLMTLKSNLIKMKFPNIQDRNFSRTFSFDKHGAQVVHA
IIKYSKDSEGHQQLKCIDLYYFCFHDLLETKNDHDIFIEEDRKPDLSLEY
PDTESYEEVKFDYESRDRGMTTLLVHSFNRFPDSIDHEDTPKRQKICSEC
RVDLVQSSKGKIWHSKKISLDLSRSNTNLFLTRDKICAYGDVNDMVFKAY
EFNLDGDYVTSYSAFIDPDHDSHILKQYRNTMHYITQTEVIHQNESRPFQ
SYRVLKFKNGKVEVLAEWNDNTNGDGLPHDFYDDDHSDWRFFRFECILTR
LGHLLAQYRIDRGNGLCEFRFFDLKTKDTLIKFQISENPYLFEGKLNLSR
NGREFSSMYHYDQKLFKVWKIDFKTGEISLKKFARLAVLTSFSEVYLIQQ
NLPKSLFDYLGIEK Run BLAST on NCBI transcript from alignment at sc0000378:69207..71635 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021146 ID=TCONS_00021146|Name=TCONS_00021146|organism=Clytia hemisphaerica|type=transcript|length=2429bp|location=Sequence derived from alignment at sc0000378:69207..71635 (Clytia hemisphaerica)
TTCAAAAGCAGATACAATATACCACATatcacaaaaagaaaaaaaaaata
tagctAAGGCGTTACATAAGActtaaagaaattaaaattattatcaataa
ttgaaaatataaatataatagCATAAATGATATTACATCACATGTATATT
TcaatattctcagttgagcGAGACCAATTATTTTATTGTATCAATTACCG
ACCCAgcatttgctgcaaacaaaaaataataatattgaatttcctaaTGT
ACCTGaatttatcggcgatccaaaaaatatctgcaatctgattggttaaa
atacaatacattttgtattttacatgtaaaaatataaattgacgaaaaaa
tgttgttgcattgtagcggtagtagcaatctaacgtcactttgctacaaa
actgccctgcgcttttttccaacacagaaagtgtattttttgggtcgccg
ataaaccagttatcagacatttgctcgtacaatatggaaatatttcactc
gttcctgattttccgtatattttcctcgcccaaaggctcggaaaatattg
tacggaaaaattttggaactcgtaaaatatttctcatattgtactcgaaA
CTTTTCGATAACAATAACGTACTggcttcttttgaaaacaattgaCGTCA
GTCTTTCGAGTCGTGTTGTTTTAGCGTGAACTTGTTCATGTGGCGGCATT
TCGAAATCAGTTCGAATTCTGAAGTTCAACAGCTTGTCGAGCTGGTCGAA
TGTTGCGATTTCGAATTTTTCACTGAGGCAAAGTGAACATTTTACCGAGG
CACGGTTGAAGGGTGGACAACGACGGATTGTTTTCCAAGTAATCTTTGGG
TGTCTGTTTTTGCGTTTCAACCTCCAAATTTCCTTGGAAAGTTCTATCTC
CTTTTCGTAATTCTCATTTGCGAATTAAGACTTGTGGTTCGcgatataat
aataataaaactgTGTACATAATAGAAAATGACCATTGGCTACTAAACAA
CAAGCACATTATTTCTCAATTCCAAGGTAATCAAACAATGATTTTGGTAG
ATTTTGTTGTATTAAATATACTTCACTAAATGAAGTCAAAACAGCCAATC
TGGCGAACTTTTTCAACGATATTTCACCTGTTTTAAAGTCGATCTTCCAT
ACTTTGAAAAGCTTTTGGTCATAATGGTACATCGATGAAAACTCTCTGCC
ATTCCTAGACAAATTGAGTTTACCTTCAAATAAATAaggattttctgaaa
tttggaaTTTTATTAAAGTATCTTTAGTTTTCAGATCAAAAAACCGAAAC
TCGCAAAGACCATTGCCTCTGTCAATTCGATACTGTGCTAAAAGATGACC
AAGCCGGGTTAAGATACACTCAAAACGGAAAAAACGCCAATCTGAATGAT
CATCATCGTAGAAATCATGGGGTAAACCATCGCCATTGGTATTATCATTC
CATTCAGCTAAAACCTCAACTTTGCCATTTTTAAACTTTAGAACGCGGTA
AGATTGGAATGGTCTTGATTCATTCTGATGAATAACTTCAGTTTGTGTGA
TATAATGCATTGTATTACGATATTGTTTTAAAATGTGAGAATCGTGATCA
GGATCTATAAATGCGGAGTAAGATGTTACGTAGTCACCATCCAAATTAAA
CTCGTAGGCCTTGAAAACCATATCATTGACATCTCCGTACGCGCAAATCT
TATCtcttgttaaaaataaattagTATTAGAACGACTCAAGtcaagagaa
attttttttgaatgccAAATCTTTCCTTTTGATGATTGTACCAAATCAAC
TCTACATTCGGAAcaaattttttgtctttttggtGTATCCTCATGATCGA
TCGAATCTGGGAATCGATTGAAAGAGTGAACTAATAAAGTAGTCATTCCT
CTATCGCGAGATTCATAATCAAATTTGActtcttcataactttctgtGTC
AGGATATTCCAAAGAGAGGTCAGGTTTTCGATCCTCCTCAATAAAAATAT
CATGATCATTCTTCGTTTCCAATAAatcatgaaaacaaaaataatacaaa
TCAATACATTTCAACTGTTGATGACCTTCCGAATCTTTGGAATATTTTAT
GATAGCATGCACAACTTGAGCTCCATGCTTGTCAAATGAGAATGTCCTAG
AAAAATTCCGATCTTGAATATTTGgaaacttcatttttataaGATTACTC
TTTAATGTCATTAAGTCTCGATCAAAATATACAAATTGAAGAAAACATCT
TTGTTTATAATCATCTTGATAGATAAGATAGTATTGGCCGCTTTCCTCAA
AGCCTTGCTCAACTGAATCTGAATCAAATTGATCCCATAATGCAAAGGGT
TGAATATCTTGGTCTCTAGTAATTTCTGATGGTAAGAAATTACATAGTTT
CATTGCTGatacctttttttatttttact Coding sequence (CDS) from alignment at sc0000378:69207..71635 >TCONS_00021146 ID=TCONS_00021146|Name=TCONS_00021146|organism=Clytia hemisphaerica|type=CDS|length=1395bp|location=Sequence derived from alignment at sc0000378:69207..71635 (Clytia hemisphaerica)
TTATTTCTCAATTCCAAGGTAATCAAACAATGATTTTGGTAGATTTTGTT
GTATTAAATATACTTCACTAAATGAAGTCAAAACAGCCAATCTGGCGAAC
TTTTTCAACGATATTTCACCTGTTTTAAAGTCGATCTTCCATACTTTGAA
AAGCTTTTGGTCATAATGGTACATCGATGAAAACTCTCTGCCATTCCTAG
ACAAATTGAGTTTACCTTCAAATAAATAaggattttctgaaatttggaaT
TTTATTAAAGTATCTTTAGTTTTCAGATCAAAAAACCGAAACTCGCAAAG
ACCATTGCCTCTGTCAATTCGATACTGTGCTAAAAGATGACCAAGCCGGG
TTAAGATACACTCAAAACGGAAAAAACGCCAATCTGAATGATCATCATCG
TAGAAATCATGGGGTAAACCATCGCCATTGGTATTATCATTCCATTCAGC
TAAAACCTCAACTTTGCCATTTTTAAACTTTAGAACGCGGTAAGATTGGA
ATGGTCTTGATTCATTCTGATGAATAACTTCAGTTTGTGTGATATAATGC
ATTGTATTACGATATTGTTTTAAAATGTGAGAATCGTGATCAGGATCTAT
AAATGCGGAGTAAGATGTTACGTAGTCACCATCCAAATTAAACTCGTAGG
CCTTGAAAACCATATCATTGACATCTCCGTACGCGCAAATCTTATCtctt
gttaaaaataaattagTATTAGAACGACTCAAGtcaagagaaattttttt
tgaatgccAAATCTTTCCTTTTGATGATTGTACCAAATCAACTCTACATT
CGGAAcaaattttttgtctttttggtGTATCCTCATGATCGATCGAATCT
GGGAATCGATTGAAAGAGTGAACTAATAAAGTAGTCATTCCTCTATCGCG
AGATTCATAATCAAATTTGActtcttcataactttctgtGTCAGGATATT
CCAAAGAGAGGTCAGGTTTTCGATCCTCCTCAATAAAAATATCATGATCA
TTCTTCGTTTCCAATAAatcatgaaaacaaaaataatacaaaTCAATACA
TTTCAACTGTTGATGACCTTCCGAATCTTTGGAATATTTTATGATAGCAT
GCACAACTTGAGCTCCATGCTTGTCAAATGAGAATGTCCTAGAAAAATTC
CGATCTTGAATATTTGgaaacttcatttttataaGATTACTCTTTAATGT
CATTAAGTCTCGATCAAAATATACAAATTGAAGAAAACATCTTTGTTTAT
AATCATCTTGATAGATAAGATAGTATTGGCCGCTTTCCTCAAAGCCTTGC
TCAACTGAATCTGAATCAAATTGATCCCATAATGCAAAGGGTTGAATATC
TTGGTCTCTAGTAATTTCTGATGGTAAGAAATTACATAGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021146-exon-sc0000378-1491911889:69207..71635 | TCONS_00021146-exon-sc0000378-1491911889:69207..71635 | Clytia hemisphaerica | exon |
| TCONS_00021146-exon-sc0000378-1510915933:69207..71635 | TCONS_00021146-exon-sc0000378-1510915933:69207..71635 | Clytia hemisphaerica | exon |
| TCONS_00021146-exon-sc0000378-1575043694:69207..71635 | TCONS_00021146-exon-sc0000378-1575043694:69207..71635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000378 | supercontig | sc0000378:69207..71635 . |
Blast
The following BLAST results are available for this feature:
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