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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021159 ID=TCONS_00021159|Name=TCONS_00021159|organism=Clytia hemisphaerica|type=transcript|length=1279bp
ATATGGCTGGATAAACACATTGTGAAATGTGGTAACCCTGCTGATGCACC
agtgaaaattgacaaaaacgaACATGAATGGTACGAGAAAGCAGCAAAGA
AACATAAAGACTTTTCAAAGTGCTCCTTAACCAAAGCAAGAGACGACCCA
ATTTTTGGGCTGAGACCACAGTCTTCCATTCACAACATTCTGATTTCTGA
TTGATTTACATGATGGAAATTACTGGCttatgtgattttttcagtttaTT
GTTCAATGGTATTAGCAAATGTGTTCCAGCAACACCTTATCAAATGGAAA
CCTCAACAATGAGGTATGAAAGATTGTTGTGGGACGGTGAGCTTTGGTAT
GAGTGGTTGCTGTTATTTCTAGCCAATGAAAATCTTGATGTCAATGAGca
tatgaaaaatgtaaaagtgtTATTTGGTAATGTTTCTGGTAGTTTTTATa
aggaaatattgacttttcgGAATGATTTGCAAGTTCCGGAGGAAAAAGAA
GTGACAAATGAGGAACTGAGACTTTCCTCTGAAGAGGGCAATATATTGAT
GTATGTGGCAGGCTAGATTCCTCGGTCTTTGttggaaaagttgaaagacA
GGAAAGAATCAGGAAAGATTTTTTAGAGTACACCAATGAGTGGACAAAAA
CGACCAACAAAGGTGGGCTGTATGTTGTTAATGAtgaatgttttattttc
ataagaAGACTCGAAGACAGGAAAATTCTAAACATAACCTTTTTGAACAA
ATATGCAGGTAAAGATCTCCGGCCAATTTTGTTGTAAAAAGTTCGATGCA
GTTCACTTGTAAGATTGGGATGGGAATCGTTAACTAAAAATCTAGATATT
AAATTATCAAATCAGTTTGAAGAGTCAGTCTTCAAAATTTGGATAGAGAT
TCGTTGCCATGCCTTTATTAAAGCTTGGTTGaatattgtaaaatataaat
caaaagaacAAGTTGATAACATGGGAACACTTGCTCTACGTAAAAGCCTG
CCAAGCTCTggctaaatttgtattttttataccATTATACTAACGTTCAT
ATCTATTTCGATTATATTTATTGCCTTGAAGAAGTTTAATTCATCTTTTA
CATTCAGTTGTTTTGATAGATTAATATGTTATTTATTTAAACTAATGCAT
CCATTCCATTccattatatttatttatttatttatatgtgATTTCTATTT
TGTGTTTCATTACATTATGCCTTATGGATCTATTGGATCacgtttttttt
agttttgtgtTGCCAAATTTCAACTAGGA Run BLAST on NCBI protein sequence of TCONS_00021159-protein >TCONS_00021159-protein ID=TCONS_00021159-protein|Name=TCONS_00021159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MMEITGLCDFFSLLFNGISKCVPATPYQMETSTMRYERLLWDGELWYEWL
LLFLANENLDVNEHMKNVKVLFGNVSGSFYKEILTFRNDLQVPEEKEVTN
EELRLSSEEGNILMYVAG Run BLAST on NCBI transcript from alignment at sc0000379:75580..77842+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021159 ID=TCONS_00021159|Name=TCONS_00021159|organism=Clytia hemisphaerica|type=transcript|length=2263bp|location=Sequence derived from alignment at sc0000379:75580..77842+ (Clytia hemisphaerica)
ATATGGCTGGATAAACACATTGTGAAATGTGGTAAGTTGAGAACAATGAa
ttcaaattagaaaaaatatattttactttGCTATATTAGCATACACTGCG
ATCTCGTTTCGGAAGttcaagaagtttttttcacgaattattttctcttt
tctaaTTGCTGTGGAAGCGTTCGGTAAATAAGTCAGAGTTCCTTTATAAT
TGCGTCTAATTGCAGAACACTTTGTTTCTGAAATCACTCACACTTCTTTT
TTAATTGCGTTGCTTTGGTAACCTAATTTATCAATCgaaaaaaagagaca
aaacttGAATGAGCAAATGACAGAacatatttttgccaaatttgaatCTG
TTTTTTCAAGTTTGACCCTTGTCaagaaaaagctcaaaatttggCCTTAT
CCATGTGAATTGTAACAAATAAATTAagattaagaaagaaaaaaggatGG
TTTCTTGTAAGAGCGAAATCTAttcttgaaaaatgtaaaaattgaaGGTG
ATTTTTGCGAATAAAAAATAATCCCTCGATTACATACACGACAAAAGATC
TTCATTTAAACAGTAATTTTTTGATATCGAAGGcaaatctattttcaata
catcaatgttgaaattaaattaaaatattatgttttgcagtcaaaatatt
gaaaagaagtttcgtgattgaaaaattaacaaaaatcgGCGTAATTAAAC
TTCAATTAATTAAGCTAATTTTGTAGAGAGCGAGATCGCCGTGATACAAG
CCATTACGTACTGTTAAAGTAAAACAACATCCGAAACAGTGTTCAAGCTA
AAAAATATATCAACATATGTCAGAAGACTTATATAAACTaagggcaaaac
aaaaaaaacttacaTTTTTACTAAGACATATATAGCATAGGCCAaaggaa
agtgtaaaaaagagaaacaaatAAAAGATGGAATGTGGAAGGTGGAATTC
ATATATGTGAAAACAagtaaagaattgaaatcattgtaaattataatcaa
ttttttcaacttCAGGTAACCCTGCTGATGCACCagtgaaaattgacaaa
aacgaACATGAATGGTACGAGAAAGCAGCAAAGAAACATAAAGACTTTTC
AAAGTGCTCCTTAACCAAAGCAAGAGACGACCCAATTTTTGGGCTGAGAC
CACAGTCTTCCATTCACAACATTCTGATTTCTGATTGATTTACATGATGG
AAATTACTGGCttatgtgattttttcagtttaTTGTTCAATGGTATTAGC
AAATGTGTTCCAGCAACACCTTATCAAATGGAAACCTCAACAATGAGGTA
TGAAAGATTGTTGTGGGACGGTGAGCTTTGGTATGAGTGGTTGCTGTTAT
TTCTAGCCAATGAAAATCTTGATGTCAATGAGcatatgaaaaatgtaaaa
gtgtTATTTGGTAATGTTTCTGGTAGTTTTTATaaggaaatattgacttt
tcgGAATGATTTGCAAGTTCCGGAGGAAAAAGAAGTGACAAATGAGGAAC
TGAGACTTTCCTCTGAAGAGGGCAATATATTGATGTATGTGGCAGGCTAG
ATTCCTCGGTCTTTGttggaaaagttgaaagacAGGAAAGAATCAGGAAA
GATTTTTTAGAGTACACCAATGAGTGGACAAAAACGACCAACAAAGGTGG
GCTGTATGTTGTTAATGAtgaatgttttattttcataagaAGACTCGAAG
ACAGGAAAATTCTAAACATAACCTTTTTGAACAAATATGCAGGTAAAGAT
CTCCGGCCAATTTTGTTGTAAAAAGTTCGATGCAGTTCACTTGTAAGATT
GGGATGGGAATCGTTAACTAAAAATCTAGATATTAAATTATCAAATCAGT
TTGAAGAGTCAGTCTTCAAAATTTGGATAGAGATTCGTTGCCATGCCTTT
ATTAAAGCTTGGTTGaatattgtaaaatataaatcaaaagaacAAGTTGA
TAACATGGGAACACTTGCTCTACGTAAAAGCCTGCCAAGCTCTggctaaa
tttgtattttttataccATTATACTAACGTTCATATCTATTTCGATTATA
TTTATTGCCTTGAAGAAGTTTAATTCATCTTTTACATTCAGTTGTTTTGA
TAGATTAATATGTTATTTATTTAAACTAATGCATCCATTCCATTccatta
tatttatttatttatttatatgtgATTTCTATTTTGTGTTTCATTACATT
ATGCCTTATGGATCTATTGGATCacgttttttttagttttgtgtTGCCAA
ATTTCAACTAGGA Coding sequence (CDS) from alignment at sc0000379:75580..77842+ >TCONS_00021159 ID=TCONS_00021159|Name=TCONS_00021159|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000379:75580..77842+ (Clytia hemisphaerica)
ATGATGGAAATTACTGGCttatgtgattttttcagtttaTTGTTCAATGG
TATTAGCAAATGTGTTCCAGCAACACCTTATCAAATGGAAACCTCAACAA
TGAGGTATGAAAGATTGTTGTGGGACGGTGAGCTTTGGTATGAGTGGTTG
CTGTTATTTCTAGCCAATGAAAATCTTGATGTCAATGAGcatatgaaaaa
tgtaaaagtgtTATTTGGTAATGTTTCTGGTAGTTTTTATaaggaaatat
tgacttttcgGAATGATTTGCAAGTTCCGGAGGAAAAAGAAGTGACAAAT
GAGGAACTGAGACTTTCCTCTGAAGAGGGCAATATATTGATGTATGTGGC
AGGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021159-exon-sc0000379-1491911889:75580..75610 | TCONS_00021159-exon-sc0000379-1491911889:75580..75610 | Clytia hemisphaerica | exon |
| TCONS_00021159-exon-sc0000379-1510915933:75580..75610 | TCONS_00021159-exon-sc0000379-1510915933:75580..75610 | Clytia hemisphaerica | exon |
| TCONS_00021159-exon-sc0000379-1575043694:75580..75610 | TCONS_00021159-exon-sc0000379-1575043694:75580..75610 | Clytia hemisphaerica | exon |
| TCONS_00021159-exon-sc0000379-1491911889:76595..77842 | TCONS_00021159-exon-sc0000379-1491911889:76595..77842 | Clytia hemisphaerica | exon |
| TCONS_00021159-exon-sc0000379-1510915933:76595..77842 | TCONS_00021159-exon-sc0000379-1510915933:76595..77842 | Clytia hemisphaerica | exon |
| TCONS_00021159-exon-sc0000379-1575043694:76595..77842 | TCONS_00021159-exon-sc0000379-1575043694:76595..77842 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:75580..77842 + |
Blast
The following BLAST results are available for this feature:
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