TCONS_00021160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021160
Unique NameTCONS_00021160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021160 ID=TCONS_00021160|Name=TCONS_00021160|organism=Clytia hemisphaerica|type=transcript|length=3729bp
CGAGTGTAAGGAACTGTACTAGCCAATCATAGGACCATTTTTCGAGTCTG
TCTATATCAATTTGGATGACAAGGGAGTCACATACTGAATCTACCTCTTT
TAAGATCTTTGTATCATTGGCGAAAAGTAGCAGAGTCGATATCACTTTGT
CAGGCAAATCGTTAATGTATATGACAAAAAGTAGAGTGCCCAAGACACTT
CCTTGTGGTATTCCACTTAATACACTATCCACGTTGGATTTTGATTGGTT
TACTTTGACCAACTGCTTCCTTCCACTCAGAAACGATGATATCCAATTTT
TTAATGAACCAACTATGCCATACCCTTCTAACTTCTTGCAAAGCCTACGA
TGAGGCACGGTATCAAATGCCTTAGCGAAATCAAAATAGATGCAGTCTAC
AGCTTTTCCATCTGATATACTTTCGCAGTACCGGTCAACATATTTTAATA
GTTGGGTAACAGTGGAACGTCTACTGATGAAGCCGTACTGCTTATCTGTT
AGGAGGTTCGTGATATGTTCTCGTAAGATCGACTCCATCAGCTTGCCAAC
CACGTATGTTAAACTAACTAGTCTGTAGTTGACGGTTATGAAGTTATGCG
CCCCTTTGTTCTTAAAGATTAGTGTGACGTGAGCAACCTTCCAATCCTCA
AGTAGTACCCCTTCAGCCAGTGTCTTTTTTCATAAACCTTGAAAGGGGCT
CGGAAATTTCGTCGACAAGttctttcaacatttttggGTGTATTTCATCA
GGACCAAaagatttgtttacatccagatccttgatttttttacttACGAT
ATCTTTAGTTATGATGATGTCCACAATATTATTTTCTGTTCTTCGTGGAA
ATTCTTGAAGATCCTCTTCAGGCTTAACGGTAAAGACACTGCAGGATTGC
TTTTGGAGAATGTTTGCTTTCTCGTGGTCCTCGTGACGCAGCGATGACTT
cgcaaaataataaataatagtCACCGCATGGTCAGAGATTCATGGACCAG
GTTTTGGAACCGTCGCAATTGTTGTGATGAATCTCGCTTTCGTCTTCAAT
GTAATTTTTGATCATGGTTTCTCCCTCGTCTTCAAGTTGCGTCGTATCGA
TGTCTTCAGGTGACTCGAGAAGTGAAGAAACACATGTCACAGCTTTCATT
TTACTTCTTACATGCGACCAAAAGACTTTTGGTTTCGTTTTTACTATAGT
GCATATGTTGCGTTCGTATGTTTGATGTGCTTGTGACATCATCCGATTTA
CCCTGTTAGGTGATGTAATATAAGTAAACCGATTGCGTCTCCTTTCCTCG
GGACGTAAAGCTCGGGCCCATTTTCTGTGCAGTCGATTTTTCGGTTACTT
CTCTTTGCAGATCATTTCCCATTGGTATAGATCCCTTGCTCTTCCAACTC
TGACAATCAAATTCTTTCAACGGAACAAATTGATTTCTAAGCtctaataa
tttatttttaaatgattGCCAAATTTCCTCAACAGTTTTTTCGTATTGAG
TAATCCTTCTTGCCATTGATGTGCCACAAGAGATTGTTTCATTGAAGCAT
AATCGCCATCGTCATAGACGTATCACTTTGAGTTACCTTTGCACTCAGTT
TAGCAAGCAAAAGTGAAAACCAAAACACTATGATCGCTCTTCCCTAGTGG
GCTTCGATATTTGATTCTCCTCGCCCGTGAAAATTAAATCGATCGTAGAG
GGGTCATCGGTTCCTCGACAACGTGTTGGCTCATCCACGTGTTGATGTAG
AAAGGAATCACGGATTGCATCCAAAAACTGCTCTTCTTTACTCTGCTCGG
TATGCGGTGTGGTCCAATTTTCCCAGTTAATTGTTGGGAAATTGAAATCA
CCAACCAAACATTTGTGAGAGTATTTCTTGTCTGCAGCAATAATCTTCTT
TGACTTCACAGATTGCAATGATATGTGGTTTCTCTTTCTGTGCGTGGATT
TgtagtttgtttattttcttaggTGTAAGTTGGTCTGCGTTGGTGTACAT
AATTTTTATGTCCTTGACAAGATTCTTTTTCTATTTAGATTTGTTGGACG
CTCTGCGATTTGGTAGAGTGTTGAcggtttttttgttgtttttttggttt
tgttgtatttcgttgtttttgtttttttcttctttttgttctttttcgtt
ttttttgacCAGTTACATTTACTGGTGTTGTTGAAGGTTGGTGGCCTTCA
CCTTCCTGATGCCGAACCCGTTTTTTGAGGAACCACGGACTCTAAACACT
ACATCTGTTTTCCCTTTGTTCTTTTCGTTCAAGTCTTTTGCTTGTGCAAC
TAAGTCTTTACATTTTTTcctctgatctggagtcaggtCTTCCAGACACT
CCTTCCCTTTCTACGTGATTTTACCCTTAAGAGCGGCGAGGTTCCCAAAG
ATGTTCTCTTTTCTTTCTCGCTACCCAATTTGAACAGTATTGGACGAGTC
TTCCCTGTGGATTTCGAGCCGAGTCTAAATAATTGTTTAATACCTTTGCC
CAGAGGTTTTAAATGAGCGTCTTCACATACTCTGCATCATGCTTAGGTGC
TTAGGTTCTTTATCAGCTGGTTCTGCAGCCCCGTGGATAATGATGTTTTT
CGATCTTCTTATTTGCTCTCTTTGTTCTGCATCTTCTTCTTCATGTACTT
TCTTAACGGCAGTCTTAATACATTCGGTTGATGGAGCAGTTTCTCTATCA
GCAGTTACTGCAGATGCGTACGATTTTGTGCATTCTTCTTTCATGGTGGA
GAAAATTTGTGTACGCAAATCCTCTAGTTTTTTATCCAGCATATTCTCAA
CGTACTCACGGTATGAAATGCGGGATCGTTAGATAGCTGTTTCTTTAAAT
CTGACAACTCTTCTTTTTGGGACTCTACGATCTCATTCTCTGTGATGGTC
TCCTTCAGTTTAGCAAGCTCGGCAGCTGTTTTTAgtgaatatatatttta
ttattgTCAGTAGTTGTCAGATTTAATGAAACAGCTATCTAACGATCCTG
ATAAAGATCTTGATAAAGACAAACCGTCGAAACCGCCGCAACCGCCTCAC
ACAATTCTGTGTTTATTTTGTTCACTTGTTCCAATTATAATAACCAATTG
TTATATAATAACAATAGCAACAACACTGAACTCATCCACCGCAACAGGAA
GCGCAATATAATTTGGTTCAATCCACCATTTagtaaaaatgtttcaacaa
aCATTGGTAAATTATTCCTAAAATTGATTTCGAAGCACTTCACCAGAGCA
AACGACCTCTATAAAGTGTTCAACAAAAACAATGTCAAAATTAGTTATTC
GTGTACTGAAAACGTCCGCACGATTATTGCAGCACACAACAAGAAGATAT
TATCGAAAAGAGAATCCACAACTGAGCTTTGTAATTGCCGAGATAAGAAG
TCATGTCCGCTAGACAACAAGTGCCAAACCACATCTGTAATTTACAAATG
CGAAGTAACTGCCCCAGATCACGAGAAAAAAGTTTACATTGGTCTCACTG
AGAAGGAGTTCAAACAAAGATATAACGGGCATAAACTATCCATCACCAAT
GTCAAATACAAAAACAAAACTACCCTTTCGACGTACGTCTGGagtttaaa
agataaaaatgtcTTGCCAAATCTTAAATGGTCTATCATGAAACGGGTAA
AATCATATTCTAACACTTCGAAAGTTTGCCGTTTGTGCTTGCAAGAAAAG
TTAGAAATTCTTCGCTACGAAAATAAGCC
Run BLAST on NCBI

transcript from alignment at sc0000379:106198..109997+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021160 ID=TCONS_00021160|Name=TCONS_00021160|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at sc0000379:106198..109997+ (Clytia hemisphaerica)
CGAGTGTAAGGAACTGTACTAGCCAATCATAGGACCATTTTTCGAGTCTG
TCTATATCAATTTGGATGACAAGGGAGTCACATACTGAATCTACCTCTTT
TAAGATCTTTGTATCATTGGCGAAAAGTAGCAGAGTCGATATCACTTTGT
CAGGCAAATCGTTAATGTATATGACAAAAAGTAGAGTGCCCAAGACACTT
CCTTGTGGTATTCCACTTAATACACTATCCACGTTGGATTTTGATTGGTT
TACTTTGACCAACTGCTTCCTTCCACTCAGAAACGATGATATCCAATTTT
TTAATGAACCAACTATGCCATACCCTTCTAACTTCTTGCAAAGCCTACGA
TGAGGCACGGTATCAAATGCCTTAGCGAAATCAAAATAGATGCAGTNCTT
AACTTTTTGCAAAGCCTACGACGAGGCACGGTATCAAATGCCTTAGCGAA
ATCAAAATAGATGCAGTCTACAGCTTTTCCATCTGATATACTTTCGCAGT
ACCGGTCAACATATTTTAATAGTTGGGTAACAGTGGAACGTCTACTGATG
AAGCCGTACTGCTTATCTGTTAGGAGGTTCGTGATATGTTCTCGTAAGAT
CGACTCCATCAGCTTGCCAACCACGTATGTTAAACTAACTAGTCTGTAGT
TGACGGTTATGAAGTTATGCGCCCCTTTGTTCTTAAAGATTAGTGTGACG
TGAGCAACCTTCCAATCCTCAAGTAGTACCCCTTCAGCCAGTGTCTTTTT
TCATAAACCTTGAAAGGGGCTCGGAAATTTCGTCGACAAGttctttcaac
atttttggGTGTATTTCATCAGGACCAAaagatttgtttacatccagatc
cttgatttttttacttACGATATCTTTAGTTATGATGATGTCCACAATAT
TATTTTCTGTTCTTCGTGGAAATTCTTGAAGATCCTCTTCAGGCTTAACG
GTAAAGACACTGCAGGATTGCTTTTGGAGAATGTTTGCTTTCTCGTGGTC
CTCGTGACGCAGCGATGACTTcgcaaaataataaataatagtCACCGCAT
GGTCAGAGATTCATGGACCAGGTTTTGGAACCGTCGCAATTGTTGTGATG
AATCTCGCTTTCGTCTTCAATGTAATTTTTGATCATGGTTTCTCCCTCGT
CTTCAAGTTGCGTCGTATCGATGTCTTCAGGTGACTCGAGAAGTGAAGAA
ACACATGTCACAGCTTTCATTTTACTTCTTACATGCGACCAAAAGACTTT
TGGTTTCGTTTTTACTATAGTGCATATGTTGCGTTCGTATGTTTGATGTG
CTTGTGACATCATCCGATTTACCCTGTTAGGTGATGTAATATAAGTAAAC
CGATTGCGTCTCCTTTCCTCGGGACGTAAAGCTCGGGCCCATTTTCTGTG
CAGTCGATTTTTCGGTTACTTCTCTTTGCAGATCATTTCCCATTGGTATA
GATCCCTTGCTCTTCCAACTCTGACAATCAAATTCTTTCAACGGAACAAA
TTGATTTCTAAGCtctaataatttatttttaaatgattGCCAAATTTCCT
CAACAGTTTTTTCGTATTGAGTAATCCTTCTTGCCATTGATGTGCCACAA
GAGATTGTTTCATTGAAGCATAATCGCCATCGTCATAGACGTATCACTTT
GAGTTACCTTTGCACTCAGTTTAGCAAGCAAAAGTGAAAACCAAAACACT
ATGATCGCTCTTCCCTAGTGGGCTTCGATATTTGATTCTCCTCGCCCGTG
AAAATTAAATCGATCGTAGAGGGGTCATCGGTTCCTCGACAACGTGTTGG
CTCATCCACGTGTTGATGTAGAAAGGAATCACGGATTGCATCCAAAAACT
GCTCTTCTTTACTCTGCTCGGTATGCGGTGTGGTCCAATTTTCCCAGTTA
ATTGTTGGGAAATTGAAATCACCAACCAAACATTTGTGAGAGTATTTCTT
GTCTGCAGCAATAATCTTCTTTGACTTCACAGATTGCAATGATATGTGGT
TTCTCTTTCTGTGCGTGGATTTgtagtttgtttattttcttaggTGTAAG
TTGGTCTGCGTTGGTGTACATAATTTTTATGTCCTTGACAAGATTCTTTT
TCTATTTAGATTTGTTGGACGCTCTGCGATTTGGTAGAGTGTTGAcggtt
tttttgttgtttttttggttttgttgtatttcgttgtttttgtttttttc
ttctttttgttctttttcgttttttttgacCAGTTACATTTACTGGTGTT
GTTGAAGGTTGGTGGCCTTCACCTTCCTGATGCCGAACCCGTTTTTTGAG
GAACCACGGACTCTAAACACTACATCTGTTTTCCCTTTGTTCTTTTCGTT
CAAGTCTTTTGCTTGTGCAACTAAGTCTTTACATTTTTTcctctgatctg
gagtcaggtCTTCCAGACACTCCTTCCCTTTCTACGTGATTTTACCCTTA
AGAGCGGCGAGGTTCCCAAAGATGTTCTCTTTTCTTTCTCGCTACCCAAT
TTGAACAGTATTGGACGAGTCTTCCCTGTGGATTTCGAGCCGAGTCTAAA
TAATTGTTTAATACCTTTGCCCAGAGGTTTTAAATGAGCGTCTTCACATA
CTCTGCATCATGCTTAGGTGCTTAGGTTCTTTATCAGCTGGTTCTGCAGC
CCCGTGGATAATGATGTTTTTCGATCTTCTTATTTGCTCTCTTTGTTCTG
CATCTTCTTCTTCATGTACTTTCTTAACGGCAGTCTTAATACATTCGGTT
GATGGAGCAGTTTCTCTATCAGCAGTTACTGCAGATGCGTACGATTTTGT
GCATTCTTCTTTCATGGTGGAGAAAATTTGTGTACGCAAATCCTCTAGTT
TTTTATCCAGCATATTCTCAACGTACTCACGGTATGAAATGCGGGATCGT
TAGATAGCTGTTTCTTTAAATCTGACAACTCTTCTTTTTGGGACTCTACG
ATCTCATTCTCTGTGATGGTCTCCTTCAGTTTAGCAAGCTCGGCAGCTGT
TTTTAgtgaatatatattttattattgTCAGTAGTTGTCAGATTTAATGA
AACAGCTATCTAACGATCCTGATAAAGATCTTGATAAAGACAAACCGTCG
AAACCGCCGCAACCGCCTCACACAATTCTGTGTTTATTTTGTTCACTTGT
TCCAATTATAATAACCAATTGTTATATAATAACAATAGCAACAACACTGA
ACTCATCCACCGCAACAGGAAGCGCAATATAATTTGGTTCAATCCACCAT
TTagtaaaaatgtttcaacaaaCATTGGTAAATTATTCCTAAAATTGATT
TCGAAGCACTTCACCAGAGCAAACGACCTCTATAAAGTGTTCAACAAAAA
CAATGTCAAAATTAGTTATTCGTGTACTGAAAACGTCCGCACGATTATTG
CAGCACACAACAAGAAGATATTATCGAAAAGAGAATCCACAACTGAGCTT
TGTAATTGCCGAGATAAGAAGTCATGTCCGCTAGACAACAAGTGCCAAAC
CACATCTGTAATTTACAAATGCGAAGTAACTGCCCCAGATCACGAGAAAA
AAGTTTACATTGGTCTCACTGAGAAGGAGTTCAAACAAAGATATAACGGG
CATAAACTATCCATCACCAATGTCAAATACAAAAACAAAACTACCCTTTC
GACGTACGTCTGGagtttaaaagataaaaatgtcTTGCCAAATCTTAAAT
GGTCTATCATGAAACGGGTAAAATCATATTCTAACACTTCGAAAGTTTGC
CGTTTGTGCTTGCAAGAAAAGTTAGAAATTCTTCGCTACGAAAATAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011860XLOC_011860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021160-exon-sc0000379-1491911889:106198..106551TCONS_00021160-exon-sc0000379-1491911889:106198..106551Clytia hemisphaericaexon
TCONS_00021160-exon-sc0000379-1510915933:106198..106551TCONS_00021160-exon-sc0000379-1510915933:106198..106551Clytia hemisphaericaexon
TCONS_00021160-exon-sc0000379-1575043694:106198..106551TCONS_00021160-exon-sc0000379-1575043694:106198..106551Clytia hemisphaericaexon
TCONS_00021160-exon-sc0000379-1491911889:106623..109997TCONS_00021160-exon-sc0000379-1491911889:106623..109997Clytia hemisphaericaexon
TCONS_00021160-exon-sc0000379-1510915933:106623..109997TCONS_00021160-exon-sc0000379-1510915933:106623..109997Clytia hemisphaericaexon
TCONS_00021160-exon-sc0000379-1575043694:106623..109997TCONS_00021160-exon-sc0000379-1575043694:106623..109997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:106198..109997 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.47971	0.441263	0.334725	0.283916	0.780449	0.783624	0.574246	0.603103	0.292176	0.465015	0.312871	0.317321	0.321912	0.321126	0.318516	0.336556	0.152726	0.315002	0.168139	0.266587	0.278239	0.458806	0.194375	0.151536	0.326909	0.724014	0.318751	0.141385	0.204028	0.249058
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top