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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021178 ID=TCONS_00021178|Name=TCONS_00021178|organism=Clytia hemisphaerica|type=transcript|length=4140bp
AAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCT
TTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTT
AAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGA
AAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTG
ACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGAC
TGACGACAAAACTCTTTTACTTTAACTGAAACTTGACTTGTCTGACGAAA
AAAGTCGTTTACATTGACTAAGCTTGACTTGACCGATGACAAAACTATTT
GACATTGACTGAAAACTTGACTTGACTGACGAAAAAACCATTTTACATTG
ACTGAAAACTTGACTTGACTGACGACAAAACTATTTGACATTGACTGAAA
CTGGACTTGACTGACGACAAAACTCTTTTACTTTAACTGAAACTTGACTT
GTCTGACGAAAAAAGTCGTTTACATTGACTAAGCTTGACTTGACCGACGA
CAAAACTATTTTACATTGACTGAAAAATTGACTTGACTGACGAAAAAACT
ATTTTACATTGACTGAAAACTTGACTTGACTGACGACAAAACTATTTGAC
ATTGACTGAAACTTGAATTGACTGACGACAAAACTCTTTTACTTTTGACT
GAAACTTGACTTGATTGACGAAAAAACTATTTGACATTGACTGAAACTTG
ACTTGACTGACAACAAAACTGCTTTACTTTGACTGAAACCTGACTTGACT
GAcgacaaaattattttactttgACTGAAGTTTGACTTGACTGACGACAA
AACTGCTTTACTTTGACTGAAACCTGACTTGACTGAcgacaaaattattt
tactttgACTGAAGTTTGACTTGACTGACGACAAAACTGCTTTACTTTGA
CTGAAACCTGACTTGACTGAcgacaaaattattttactttgACTGAAACT
TGACTTGACTGACGACAAAACTATTTGAAATTGACTGAAACTTGACTTGT
CTGACGACAAAACTATTTGACATTAACTGAAAACTTGACTTGACTGACGA
CAAAACTCTTTTACATTAACTGAAATTCGACTTGACTGATGACAAAACTC
TTTTACAATAACTGAAACTTGACTTGTCTGACGAAAAAAGTCGTTTACAT
TGACTAAGCTTGACTTGACCGACGACAAAACTATTTGACATTGACTGAAA
ACTTGACTTGACTGACGAAAAAACTATTTTACATTGACTAAAAACTTGAC
TTGACTGACGACAAAACTATTTTACTTTAACTGAAAACTTGACTTGACTG
ACGACAAGACTCATTTATATTGATTGAAACTTGACTTGACTGATGACAAA
ACTCTCCCACTCTGACTGAAACTTAACTTGGCTTGACTGACGACAAGACT
CTTTTACATTAACTGAAAACTTGACTTGACTGATGACAAAACTCTCCCAC
TCTGACTGAAACTTAACTTGGCTTGACTGACGACAAGACTCTTTTACATT
AACTGAAAACTTGACTTGACTGAAACTTGACTTGACTGAAACTCGACTTG
ACTGATGACAAAACTATTTTACAATAGCTGAAACTTTACTTGTCTGACGA
AAAAAGTAGTTTACATTGACTAAGCTTGACTTGACCGACGAGAAAACTAT
TTGACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTTTACTTA
AACTGAAAGCTTGACTTGACTGACGAATAGACTCTTTTACATTAACTGAA
AACTTGACTtgactgaattttgaaaaaactgtttgAAATTGACTAAACTC
TTGGCTTGACTGATGATTAAACAATTTCAAACTTAAAGACGACAAAACTC
TTTTACTCTACactctcggtcaaaatatattgggaatttCGGTATTACCT
TGCTTACtaaatttaaagttcgggcgagaaagtcgcttttgggctatttg
ttaaatttaatcgaatatttcaattcgggaggagtttatagacttccagg
atATATTCTAAGcgctattggaccattcttgtacttttggatcctcagat
cctacctaaggtcttaagtctaatgttaaaactctacccttccagaGCGC
TTCGAAATTGTTTGTGACTATAAGATTTCAtgggaattttcctttttttc
tcaaatattatgacccgGATTTTAACTGAAACTTGACTTGACTTGACTGA
CAACAAAAACCTTTTATATTGATTGAAACTTGATTTGACTGACGACAAAG
CTCTTTTACTCTGACTGAAAATTGAATTTACTGACGACAAAGCTCTTTTA
CATTAACTGAAACTTGACTTACGACAAAACTATTTGACGTTGACTGAAAC
TTGACAAAACTATTTGACATTGACTTAAACTTGACTTGTCTGACGACAAA
ACTATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAACTATTTG
ACATTGACTTAAACTTGACTTGTCTGACGAAAATATCGTTTACATTGACT
AAGCTTGACTTGACCGACGACAAAACTATTTGACATTGACTGAAACTTGA
CTTGACTGACGACAAAATCCTAAGCTTGACTTGACCGATGACAAAACTAT
TTGAAATTGACTATGACTGAAACTTGACTTGACCGATGACAAAACTATTT
GAAATTGACTATGACTGAAACTTGACTATGACTGAAACTTGACTTGACTT
GACCGATGACAAAACTATTTGAAATTGACTATGACTGAAACTTGATTTGA
CTGCCAGTAAAGAGTCTGCCACTGACTGAAACTTGATATTCAAATCTTAC
ATCAAATAAACATCTTGACAGACGACAAAACTATTTTACATGAACTTAAA
CTTTATTACGACAAAATTTCTAACAATGAATTGGTTGACAAGAAAAAACC
TTTACATTAAATGAGACTGACTTGACTTGACTGATGACAAAATCCCTTAC
TCTGACTAAGCTTGACTTGACTGACGACAAAACTCTATTACATTAAGTGA
GAGCTTGACTTGACTGACGACAAAACTATTTTACATTGACTGAAACTCGA
ATTGACTGAACTCGACTTGACTGACGACAATATTCTTTTACTTTGACTAA
ACTCGACTTGACAGACGACAAAACTATTTTACATGAAATTAAACTTTATT
ACGACAAAATTTCTAACAATGAATTGGTTGACAAGAAAAAACCTTTACAT
TAAATGAGACTGACTTGACTTGACTTGACTTGACTGATGACAAAACTCCC
TTAATCTGACTAAGCTTGACTTGACTGACGACAAAACTCTATTACGTTAA
GTGAAAGCTTGACTTGACTGACGACAAAACTATTTTACATTGACTGAAAC
TCGAATTGACTGAACTCGACTTGACTGACGAGAATATTCTTTTACATTGA
CTAAACTCGACTTGACAGACGACAAAACTATTTTAGATGAACTTATACTT
TATCACGACAAAATTTCTAACAATGAATTGGTTGACAATAAAAAACTCTT
ACATTAAATGAGACTTCTGACCTGACCTGACTTGACTTGACTTGACTGAT
GAAAAAAGTCCATTACTCTGACTAAACTTGACTTGACTGACGACAAAAGT
CTTTTTCATTGACTGAAACTCGACTTGACTAAACTCGACTTGACTGATGA
CAAAACTATTTTACATGAACTTAAACTTTAGTACGACAAAATTTATAATA
ATGAATTGGTTGACAATAAAAAACTCTTACATTAAATGAGACCTCTGACC
TGACCTGACTTGACTTGACTTAACTTGACTGATGAAAAAAGTCCATTACT
CTGACTAAACTTGACTTGACTGACGACAAAAGTCTTTTTCATTGACTGAA
ACTCGACTTGACTAAACTCGACTTGACTGATGACAAAACTATTTTACATG
AACTTAAACTTTAGTACGACAAAATTTATAACAATGAATTGGTTGACAAT
AAAAAACTCTTACATTAAATGAGACCTCTGACCTGACCTGACTTGACTTG
ACTTGACTTGACTGATGAAAAAAGTCCATTACTCTGACTAAACTTGACTT
GACTGACGacaaaagtcttttttattGACTGAAACTCGAC Run BLAST on NCBI transcript from alignment at sc0000379:259598..264974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021178 ID=TCONS_00021178|Name=TCONS_00021178|organism=Clytia hemisphaerica|type=transcript|length=5377bp|location=Sequence derived from alignment at sc0000379:259598..264974+ (Clytia hemisphaerica)
AAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCT
TTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTT
AAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGA
AAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTG
ACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGAC
TGACGACAAAACTCTTTTACTTTAACTGAAACTTGACTTGTCTGACGAAA
AAAGTCGTTTACATTGACTAAGCTTGACTTGACCGATGACAAAACTATTT
GACATTGACTGAAAACTTGACTTGACTGACGAAAAAACCATTTTACATTG
ACTGAAAACTTGACTTGACTGACGACAAAACTATTTGACATTGACTGAAA
CTGGACTTGACTGACGACAAAACTCTTTTACTTTAACTGAAACTTGACTT
GTCTGACGAAAAAAGTCGTTTACATTGACTAAGCTTGACTTGACCGACGA
CAAAACTATTTTACATTGACTGAAAAATTGACTTGACTGACGAAAAAACT
ATTTTACATTGACTGAAAACTTGACTTGACTGACGACAAAACTATTTGAC
ATTGACTGAAACTTGAATTGACTGACGACAAAACTCTTTTACTTTTGACT
GAAACTTGACTTGATTGACGAAAAAACTATTTGACATTGACTGAAACTTG
ACTTGACTGACAACAAAACTGCTTTACTTTGACTGAAACCTGACTTGACT
GAcgacaaaattattttactttgACTGAAGTTTGACTTGACTGACGACAA
AACTGCTTTACTTTGACTGAAACCTGACTTGACTGAcgacaaaattattt
tactttgACTGAAGTTTGACTTGACTGACGACAAAACTGCTTTACTTTGA
CTGAAACCTGACTTGACTGAcgacaaaattattttactttgACTGAAACT
TGACTTGACTGACGACAAAACTATTTGAAATTGACTGAAACTTGACTTGT
CTGACGACAAAACTATTTGACATTAACTGAAAACTTGACTTGACTGACGA
CAAAACTCTTTTACATTAACTGAAATTCGACTTGACTGATGACAAAACTC
TTTTACAATAACTGAAACTTGACTTGTCTGACGAAAAAAGTCGTTTACAT
TGACTAAGCTTGACTTGACCGACGACAAAACTATTTGACATTGACTGAAA
ACTTGACTTGACTGACGAAAAAACTATTTTACATTGACTAAAAACTTGAC
TTGACTGACGACAAAACTATTTTACTTTAACTGAAAACTTGACTTGACTG
ACGACAAGACTCATTTATATTGATTGAAACTTGACTTGACTGATGACAAA
ACTCTCCCACTCTGACTGAAACTTAACTTGGCTTGACTGACGACAAGACT
CTTTTACATTAACTGAAAACTTGACTTGACTGATGACAAAACTCTCCCAC
TCTGACTGAAACTTAACTTGGCTTGACTGACGACAAGACTCTTTTACATT
AACTGAAAACTTGACTTGACTGAAACTTGACTTGACTGAAACTCGACTTG
ACTGATGACAAAACTATTTTACAATAGCTGAAACTTTACTTGTCTGACGA
AAAAAGTAGTTTACATTGACTAAGCTTGACTTGACCGACGAGAAAACTAT
TTGACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTTTACTTA
AACTGAAAGCTTGACTTGACTGACGAATAGACTCTTTTACATTAACTGAA
AACTTGACTtgactgaattttgaaaaaactgtttgAAATTGACTAAACTC
TTGGCTTGACTGATGATTAAACAATTTCAAACTTAAAGACGACAAAACTC
TTTTACTCTACactctcggtcaaaatatattgggaatttCGGTATTACCT
TGCTTACtaaatttaaagttcgggcgagaaagtcgcttttgggctatttg
ttaaatttaatcgaatatttcaattcgggaggagtttatagacttccagg
atATATTCTAAGcgctattggaccattcttgtacttttggatcctcagat
cctacctaaggtcttaagtctaatgttaaaactctacccttccagaGCGC
TTCGAAATTGTTTGTGACTATAAGATTTCAtgggaattttcctttttttc
tcaaatattatgacccgGATTTTAACTGAAACTTGACTTGACTTGACTGA
CAACAAAAACCTTTTATATTGATTGAAACTTGATTTGACTGACGACAAAG
CTCTTTTACTCTGACTGAAAATTGAATTTACTGACGACAAAGCTCTTTTA
CATTAACTGAAACTTGACTTACGACAAAACTATTTGACGTTGAGTGAAAC
TTGACAAAACTATTTGACATTGACTTAAACTTGACTTGACTGACAACAAA
ACTATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAACTATTTG
ACATTGACTTAAACTTGACTTGTCTGACGAAAATATCGTTTACATTGACT
AAGCTTGACTTGACCGACGACAAAACTATTTGACATTGACTGAAAACTTG
ACTTGACTGACGAAAAAACTATTTTACATTGACTGAAAACTTGACTTGAC
TGACGATAAAACTATTTGACATTGACTGAAACTGGACTTGACTGACGACA
AAACTCTTTTACTTTAACTGAAAACTTGACTCGACTGACGAATAGACTCA
TTTATATTGATTGAAACTTGACTTGACTGATGACAAAACTCTCCCACTCT
GACTGAAACTTAACTTGGCTTGACTGACGACAAGACTCTTTTACATTAAC
TGAAAACTTGACTTGACTGAAACTCGACTTGACTGATGACAAAACTCTTT
TACAATAACTGAAACTTTACTTGTCTGACGAAAAAAGTAGTTTACATTGA
CTAAGCTTGACTTGACCGACGAGAAAACTATTTGACATTGACTGAAACTT
GAATTGACTGACGACAAAACTCTTTTACTTTAACTGAAAGCTTGACTTGA
CTGACGAATAGACTCTTTTACATTAACTGAAAACTTGACTtgactgaatt
ttgaaaaaactatttGAAATTGACTAAACTTGGCTTGACTGATGATTAAA
CAATTTCAAACTTACTGACGACAAAACTCTTTTACTCTACactctcggtc
aaaatatattgagaatttcggTATTACCTTGTTTACtaaatttaaagttc
gggcgagaaagtcgcttttgggctatttgttaaatttaatcgaatatttc
aattcgggaggagtttatagacttccaggatATATTCTAAGcgctattgg
accattcttgtacttttggatcctcagatcctacctaaggtcttaagtct
aatgttaaaactctacccttccagaGCGCTTCGAAATTGTTTGTGACTAT
AAGATTTCAtgggaattttcctttttttctcaaatattatgacccggatt
ttaactgaaacttgacttgacttgactgacaacaaaaaacttttatatTG
ATTGAAACTTGATTTGACTGACGACAAAGCTCTTTTACATTAACTGAAAC
TTGACTTACGACAAAACTATTTGACGTTGACTGAAACTTGACAAAACTAT
TTGACATTGACTTAAACTTGACTTGTCTGACGACAAAACTATTTGACATT
GACTGAAACTTGACTTGACTGACGACAAAACTATTTGACATTGACTTAAA
CTTGACTTGTCTGACGAAAATATCGTTTACATTGACTAAGCTTGACTTGA
CCGACGACAAAACTATTTGACATTGACTGAAACTTGACTTGACTGACGAC
AAAATCCTAAGCTTGACTTGACCGATGACAAAACTATTTGAAATTGACTA
TGACTGAAACTTGACTTGACCGATGACAAAACTATTTGAAATTGACTATG
ACTGAAACTTGACTATGACTGAAACTTGACTTGACTTGACCGATGACAAA
ACTATTTGAAATTGACTATGACTGAAACTTGATTTGACTGCCAGTAAAGA
GTCTGCCACTGACTGAAACTTGATATTCAAATCTTACATCAAATAAACAT
CTTGACAGACGACAAAACTATTTTACATGAACTTAAACTTTATTACGACA
AAATTTCTAACAATGAATTGGTTGACAAGAAAAAACCTTTACATTAAATG
AGACTGACTTGACTTGACTGATGACAAAATCCCTTACTCTGACTAAGCTT
GACTTGACTGACGACAAAACTCTATTACATTAAGTGAGAGCTTGACTTGA
CTGACGACAAAACTATTTTACATTGACTGAAACTCGAATTGACTGAACTC
GACTTGACTGACGACAATATTCTTTTACTTTGACTAAACTCGACTTGACA
GACGACAAAACTATTTTACATGAAATTAAACTTTATTACGACAAAATTTC
TAACAATGAATTGGTTGACAAGAAAAAACCTTTACATTAAATGAGACTGA
CTTGACTTGACTTGACTTGACTGATGACAAAACTCCCTTAATCTGACTAA
GCTTGACTTGACTGACGACAAAACTCTATTACGTTAAGTGAAAGCTTGAC
TTGACTGACGACAAAACTATTTTACATTGACTGAAACTCGAATTGACTGA
ACTCGACTTGACTGACGAGAATATTCTTTTACATTGACTAAACTCGACTT
GACAGACGACAAAACTATTTTAGATGAACTTATACTTTATCACGACAAAA
TTTCTAACAATGAATTGGTTGACAATAAAAAACTCTTACATTAAATGAGA
CTTCTGACCTGACCTGACTTGACTTGACTTGACTGATGAAAAAAGTCCAT
TACTCTGACTAAACTTGACTTGACTGACGACAAAAGTCTTTTTCATTGAC
TGAAACTCGACTTGACTAAACTCGACTTGACTGATGACAAAACTATTTTA
CATGAACTTAAACTTTAGTACGACAAAATTTATAATAATGAATTGGTTGA
CAATAAAAAACTCTTACATTAAATGAGACCTCTGACCTGACCTGACTTGA
CTTGACTTAACTTGACTGATGAAAAAAGTCCATTACTCTGACTAAACTTG
ACTTGACTGACGACAAAAGTCTTTTTCATTGACTGAAACTCGACTTGACT
AAACTCGACTTGACTGATGACAAAACTATTTTACATGAACTTAAACTTTA
GTACGACAAAATTTATAACAATGAATTGGTTGACAATAAAAAACTCTTAC
ATTAAATGAGACCTCTGACCTGACCTGACTTGACTTGACTTGACTTGACT
GATGAAAAAAGTCCATTACTCTGACTAAACTTGACTTGACTGACGacaaa
agtcttttttattGACTGAAACTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021178-exon-sc0000379-1491911889:259598..261948 | TCONS_00021178-exon-sc0000379-1491911889:259598..261948 | Clytia hemisphaerica | exon |
| TCONS_00021178-exon-sc0000379-1510915933:259598..261948 | TCONS_00021178-exon-sc0000379-1510915933:259598..261948 | Clytia hemisphaerica | exon |
| TCONS_00021178-exon-sc0000379-1575043694:259598..261948 | TCONS_00021178-exon-sc0000379-1575043694:259598..261948 | Clytia hemisphaerica | exon |
| TCONS_00021178-exon-sc0000379-1491911889:263186..264974 | TCONS_00021178-exon-sc0000379-1491911889:263186..264974 | Clytia hemisphaerica | exon |
| TCONS_00021178-exon-sc0000379-1510915933:263186..264974 | TCONS_00021178-exon-sc0000379-1510915933:263186..264974 | Clytia hemisphaerica | exon |
| TCONS_00021178-exon-sc0000379-1575043694:263186..264974 | TCONS_00021178-exon-sc0000379-1575043694:263186..264974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:259598..264974 + |
Blast
The following BLAST results are available for this feature:
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